Rorug04G0447900

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
60351401 .. 60352306
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0447900.1

Sequence Viewer

Length: 906 bp
ATGGGGCATGTTGATGCTGGTAAAACCAAGTTGCTGGATTGCATCCGCGGCACGAATGTTCAGAAAGGTGAGGCTGGTGGTATTACTCAGCAGATTGGTGCAACTTATCTTCCTGCTGAGAACATACAAGAGAGAATCAAGGAGCTGAAAGCTGCTGATGATAAGCACATGAAGGTACCGGGTCTGTTGCTTATTGATACCCCAGGGCATGAGCCATTCACTAAGTTACGGTCACGGGGTTCTGGTTTGTGTGACATTGCTGTTTTGGTTGTTGACATTATGGATGGCTTAAAGCCTCAGACTATAGAGTCACTCAATCTTTTGAAGTCAAGGAATACAGAATTCATTGTTGCATTGAATAAGGTGGACAGACTCAACGGGTGGAAGCCTTGTCCAAATGCACCAATTATCAAGCCAATGAAGCAGCAATCTCAGGATGTGAAAAATGAGTTCAATATGAGAGTCGTGCAGATTGTCACTCAGTTCAAGGAGCAGGGGATTAATACTAAATTGAACGTCGATGAGAACAAACGGATGAGGGAAACATACAGCATTGTACCTATTAGTGCCAAGAGTGGTGAAGGCATCCCAGATTTGTTGTCGCTGATGGTTTATTGGACCCAGAAATCTATGACAGAGAAACTGACTTACAGCAATGAAGTGCAGTGTACAGTGTTGGAGGTCAAGTATGTTGAAGGCCTTGGGACAACAATTGATGTTATATTGGTTAATGGGGTGCTTCGCCGTGGAGATCAAATAGTTGTTTGTGGTAACCATGGTACTCCTATTGTTACTAGGATTCAATCTTTGTTGACCCCAGAGCCGAACACGGTACAAACCGGCCAAACTGGTCGAAACCGACTGGTAAATATGGTTTGGTTAAGATTTTTTAGCGTTAAAATATGA

Protein Analysis

301

Amino Acids

33.51

Weight (kDa)

9.11

Isoelectric Point (pI)

21.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 1 - 207 3.4e-33 Elongation factor Tu GTP binding domain
MMR_HSR1 PF01926 1 - 121 8.1e-06 50S ribosome-binding GTPase
GTP_EFTU_D2 PF03144 235 - 277 4.7e-07 Elongation factor Tu domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 307
Acc65I GGTACC 1 cut(s) 175
AccB1I GGYRCC 1 cut(s) 175
AccII CGCG 1 cut(s) 48
AciI CCGC 2 cut(s) 46, 48
AcoI YGGCCR 1 cut(s) 841
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 5 cut(s) 177, 558, 670, 781, 834
AgsI TTSAA 7 cut(s) 325, 358, 454, 487, 514, 695, 803
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 2 cut(s) 145, 152
AluI AGCT 2 cut(s) 145, 152
AoxI GGCC 2 cut(s) 697, 841
ApeKI GCWGC 2 cut(s) 152, 424
ApoI RAATTY 1 cut(s) 341
AseI ATTAAT 1 cut(s) 501
Asp718I GGTACC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 618
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 80, 590
AvaII GGWCC 1 cut(s) 618
BanI GGYRCC 1 cut(s) 175
BbvI GCAGC 2 cut(s) 139, 436
BccI CCATC 2 cut(s) 278, 601
BceAI ACGGC 1 cut(s) 729
BciT130I CCWGG 1 cut(s) 204
BcnI CCSGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 795
BfmI CTRYAG 1 cut(s) 303
BisI GCNGC 3 cut(s) 49, 153, 425
BlsI GCNGC 3 cut(s) 50, 154, 426
Bme1390I CCNGG 2 cut(s) 180, 204
Bme18I GGWCC 1 cut(s) 618
BmgT120I GGNCC 1 cut(s) 618
BmiI GGNNCC 2 cut(s) 177, 620
BmrFI CCNGG 2 cut(s) 180, 204
BmsI GCATC 3 cut(s) 4, 51, 594
BpuMI CCSGG 1 cut(s) 180
BsaJI CCNNGG 6 cut(s) 46, 202, 203, 700, 745, 775
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bse118I RCCGGY 1 cut(s) 839
Bse1I ACTGG 2 cut(s) 853, 867
Bse3DI GCAATG 2 cut(s) 255, 661
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 6 cut(s) 46, 202, 203, 700, 745, 775
BseGI GGATG 5 cut(s) 42, 289, 442, 540, 585
BseMI GCAATG 2 cut(s) 255, 661
BseMII CTCAG 5 cut(s) 101, 108, 311, 446, 494
BseNI ACTGG 2 cut(s) 853, 867
BseXI GCAGC 2 cut(s) 139, 436
BsgI GTGCAG 2 cut(s) 488, 683
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 699, 843
BshNI GGYRCC 1 cut(s) 175
BsiSI CCGG 2 cut(s) 179, 840
BslFI GGGAC 1 cut(s) 718
BsmFI GGGAC 1 cut(s) 718
BsnI GGCC 2 cut(s) 699, 843
Bsp1407I TGTACA 1 cut(s) 668
Bsp143I GATC 1 cut(s) 751
Bsp19I CCATGG 1 cut(s) 775
BspACI CCGC 2 cut(s) 46, 48
BspANI GGCC 2 cut(s) 699, 843
BspCNI CTCAG 5 cut(s) 100, 109, 310, 445, 493
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 177, 620
BspT107I GGYRCC 1 cut(s) 175
BsrDI GCAATG 2 cut(s) 255, 661
BsrFI RCCGGY 1 cut(s) 839
BsrGI TGTACA 1 cut(s) 668
BsrI ACTGG 2 cut(s) 853, 867
BssAI RCCGGY 1 cut(s) 839
BssECI CCNNGG 6 cut(s) 46, 202, 203, 700, 745, 775
BssMI GATC 1 cut(s) 751
BssT1I CCWWGG 2 cut(s) 700, 775
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 3 cut(s) 231, 673, 832
BstAUI TGTACA 1 cut(s) 668
BstDEI CTNAG 6 cut(s) 87, 117, 222, 297, 432, 480
BstDSI CCRYGG 3 cut(s) 46, 745, 775
BstEII GGTNACC 1 cut(s) 770
BstF5I GGATG 5 cut(s) 42, 289, 442, 540, 585
BstFNI CGCG 1 cut(s) 48
BstKTI GATC 1 cut(s) 754
BstMBI GATC 1 cut(s) 751
BstMWI GCNNNNNNNGC 2 cut(s) 48, 421
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 1 cut(s) 11
BstPI GGTNACC 1 cut(s) 770
BstSCI CCNGG 2 cut(s) 178, 202
BstSFI CTRYAG 1 cut(s) 303
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 139, 436
BstXI CCANNNNNNTGG 1 cut(s) 34
BsuRI GGCC 2 cut(s) 699, 843
BtgI CCRYGG 3 cut(s) 46, 745, 775
BtsCI GGATG 5 cut(s) 42, 289, 442, 540, 585
BtsI GCAGTG 1 cut(s) 671
BtsIMutI CAGTG 2 cut(s) 671, 678
Cfr10I RCCGGY 1 cut(s) 839
Cfr13I GGNCC 1 cut(s) 618
Cfr42I CCGCGG 1 cut(s) 49
Csp6I GTAC 5 cut(s) 176, 557, 669, 780, 833
CviAII CATG 4 cut(s) 8, 169, 209, 776
CviQI GTAC 5 cut(s) 176, 557, 669, 780, 833
DdeI CTNAG 6 cut(s) 87, 117, 222, 297, 432, 480
DpnI GATC 1 cut(s) 753
DpnII GATC 1 cut(s) 751
DrdI GACNNNNNNGTC 1 cut(s) 307
DseDI GACNNNNNNGTC 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 841
Eco130I CCWWGG 2 cut(s) 700, 775
Eco147I AGGCCT 1 cut(s) 699
Eco47I GGWCC 1 cut(s) 618
Eco91I GGTNACC 1 cut(s) 770
EcoO65I GGTNACC 1 cut(s) 770
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 2 cut(s) 700, 775
ErhI CCWWGG 2 cut(s) 700, 775
FaeI CATG 4 cut(s) 11, 172, 212, 779
FaqI GGGAC 1 cut(s) 718
FatI CATG 4 cut(s) 7, 168, 208, 775
Fnu4HI GCNGC 3 cut(s) 49, 153, 425
FokI GGATG 5 cut(s) 29, 296, 449, 547, 572
Fsp4HI GCNGC 3 cut(s) 49, 153, 425
FspBI CTAG 1 cut(s) 795
GluI GCNGC 3 cut(s) 49, 153, 425
HaeIII GGCC 2 cut(s) 699, 843
HapII CCGG 2 cut(s) 179, 840
Hin1II CATG 4 cut(s) 11, 172, 212, 779
HincII GTYRAC 2 cut(s) 274, 813
HindII GTYRAC 2 cut(s) 274, 813
HinfI GANTC 5 cut(s) 135, 308, 372, 462, 799
HpaII CCGG 2 cut(s) 179, 840
HphI GGTGA 2 cut(s) 80, 590
Hpy166II GTNNAC 4 cut(s) 274, 367, 669, 813
Hpy188I TCNGA 2 cut(s) 63, 300
Hpy188III TCNNGA 1 cut(s) 434
Hpy8I GTNNAC 4 cut(s) 274, 367, 669, 813
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 3 cut(s) 166, 575, 689
HpyCH4III ACNGT 3 cut(s) 231, 673, 832
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 6 cut(s) 42, 101, 353, 401, 469, 664
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 421
HpyF3I CTNAG 6 cut(s) 87, 117, 222, 297, 432, 480
HpySE526I ACGT 1 cut(s) 516
Hsp92II CATG 4 cut(s) 11, 172, 212, 779
KpnI GGTACC 1 cut(s) 179
KspI CCGCGG 1 cut(s) 49
Kzo9I GATC 1 cut(s) 751
LmnI GCTCC 2 cut(s) 142, 490
Lsp1109I GCAGC 2 cut(s) 139, 436
LweI GCATC 3 cut(s) 4, 51, 594
MaeI CTAG 1 cut(s) 795
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 7 cut(s) 225, 231, 251, 309, 475, 770, 790
MalI GATC 1 cut(s) 753
MboI GATC 1 cut(s) 751
MboII GAAGA 1 cut(s) 101
MfeI CAATTG 1 cut(s) 711
MluCI AATT 4 cut(s) 341, 405, 509, 711
MlyI GAGTC 3 cut(s) 317, 366, 471
MmeI TCCRAC 1 cut(s) 657
MnlI CCTC 4 cut(s) 64, 306, 531, 673
MseI TTAA 5 cut(s) 290, 501, 729, 881, 897
MslI CAYNNNNRTG 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 48
MspI CCGG 2 cut(s) 179, 840
MspR9I CCNGG 2 cut(s) 180, 204
MunI CAATTG 1 cut(s) 711
MvaI CCWGG 1 cut(s) 204
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 48, 421
NciI CCSGG 1 cut(s) 180
NcoI CCATGG 1 cut(s) 775
NdeII GATC 1 cut(s) 751
NlaIII CATG 4 cut(s) 11, 172, 212, 779
NlaIV GGNNCC 2 cut(s) 177, 620
NmuCI GTSAC 4 cut(s) 231, 251, 309, 475
NspI RCATGY 1 cut(s) 11
PasI CCCWGGG 1 cut(s) 203
PceI AGGCCT 1 cut(s) 699
PfeI GAWTC 2 cut(s) 135, 799
PkrI GCNGC 3 cut(s) 50, 154, 426
PleI GAGTC 3 cut(s) 316, 366, 470
PpsI GAGTC 3 cut(s) 316, 366, 470
PshBI ATTAAT 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 202
PspEI GGTNACC 1 cut(s) 770
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 177, 620
PspPI GGNCC 1 cut(s) 618
RsaI GTAC 5 cut(s) 177, 558, 670, 781, 834
RsaNI GTAC 5 cut(s) 176, 557, 669, 780, 833
RseI CAYNNNNRTG 1 cut(s) 12
SacII CCGCGG 1 cut(s) 49
SaqAI TTAA 5 cut(s) 290, 501, 729, 881, 897
SatI GCNGC 3 cut(s) 49, 153, 425
Sau3AI GATC 1 cut(s) 751
Sau96I GGNCC 1 cut(s) 618
SchI GAGTC 3 cut(s) 317, 366, 471
ScrFI CCNGG 2 cut(s) 180, 204
SetI ASST 8 cut(s) 70, 147, 154, 177, 366, 519, 562, 684
SfaNI GCATC 3 cut(s) 4, 51, 594
SfcI CTRYAG 1 cut(s) 303
Sfr303I CCGCGG 1 cut(s) 49
SgrBI CCGCGG 1 cut(s) 49
SinI GGWCC 1 cut(s) 618
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 4 cut(s) 341, 405, 509, 711
SseBI AGGCCT 1 cut(s) 699
SsiI CCGC 2 cut(s) 46, 48
SspMI CTAG 1 cut(s) 795
StuI AGGCCT 1 cut(s) 699
StyD4I CCNGG 2 cut(s) 178, 202
StyI CCWWGG 2 cut(s) 700, 775
TaaI ACNGT 3 cut(s) 231, 673, 832
TaiI ACGT 1 cut(s) 519
TaqI TCGA 2 cut(s) 519, 853
TasI AATT 4 cut(s) 341, 405, 509, 711
TatI WGTACW 1 cut(s) 668
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 2 cut(s) 135, 799
Tru1I TTAA 5 cut(s) 290, 501, 729, 881, 897
Tru9I TTAA 5 cut(s) 290, 501, 729, 881, 897
TscAI CASTG 2 cut(s) 671, 678
TseFI GTSAC 4 cut(s) 231, 251, 309, 475
TseI GCWGC 2 cut(s) 152, 424
Tsp45I GTSAC 4 cut(s) 231, 251, 309, 475
TspDTI ATGAA 4 cut(s) 185, 334, 434, 672
TspGWI ACGGA 1 cut(s) 547
TspRI CASTG 2 cut(s) 671, 678
VpaK11BI GGWCC 1 cut(s) 618
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 1 cut(s) 341
XceI RCATGY 1 cut(s) 11
XspI CTAG 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.