Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Reverse (-)

6753952 .. 6757143

Gene Structure 3192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG078900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2721 bp

ATGACTTCTCCTTTCACTACTACTGTTAGCCAAGTCCAAAGACTTTGGCATCTGTTTCTTCTGTTCATCATCATCACATACTCCTGTGGAGTTGAAGCTGAAAATAAGATGAGTGTCACTAATGTTGGAGCAATCATTAGTTTTAATTCTCGAATCGGAAAACAACAGAAAACTGCCATGGAGATTGCAGCTGAAAACTTCAACAACCATTCAAAGAATCATAAGATAATCCTTCATTTTCTAGATTCCAATAGAGATCCCTTACTTGCTGCTTTTTCTGCTGAAGAATTGATAAAGGAGAAGAAGGTAAAACTGCTAATGGGCATGGAGACTTGGCAGGAAGCTGCTCTAGTGGCTGATGTGGGAAATCGAGCTCAAATTCCAGTGATTTCATTTGCGGCACCAACTATTACCACCCCTCTAATGCAACGCCGCTGGCCATTTTTGATACGAACGTCTAGCGATGGTGCTGCTCAAATGAAATGCATTGCAGACATGGTTTCTGCATACAACTGGAAAAGGGTTGTGGTGATATACGAAGATGATGGTTACGGTGGTGATGTCGGGACACTAGCTCTTTTATCCGAGGCTCTTCAAGATGTTGGTTCAAAGATTGAGCATCGTCTGGTTCTCCCTCAGGTTTCTTCTGAGTTTAATCCTAATTGGGTTGAACAAGAAGTGCTGTTGAAGCTTCCCACCTTTCAATCTCGGGTGTTCATTGTGCTTCAGTCATCTTTACCAGCTGTGATTAATCTATTCAGGGTGGCAAAGAAGATGGGACTTGTAGGAAGAGACTCGGCTTGGATAATCACAGAGAGAATTACTGGTCTGCTTGACACTCAAGTCAATCATGATATGGAAGGTATTTTGGGAATCAAGAGCTACTATGCCACTAATACTAGTTCCTATATCAAGTTCAACAAGGCATTCCAAAAAAAGTATCCAGAAAAAGATGACTCCAGGCCAGGAATTTATGCTCTTCGAGCATATGATCATACTAGAATTGTAATACAGGCCATAAGAATGAGGAGTAACAGTACTACTAACATTCAGGTTGTGTTAAGTACAGTGCTAAGAAATTATCAGGGTTTAAGTGGGAAAATGCACATTGAAGGAGGTGAAGTGTTGTTCTCTCCCATATTCAGGATCGTAAACATTGTGGAAGGGAACAGATACAAAGAGTTGAACTTTTGGAGACCAGAGGTTGGGTTCTCAGAAAGCCTTTCAAAAGAAACAAGCAAAAACAGAAGTGATGATGCTGGTGCAGTAGTTTGGCCAGGGAATCTAAGTCAACGAGCTCCTAAAGGCTGGGCAATGCCGACTGCTGATAAGCCAATAATAATTGGGGTTCCAGGTATTTCTACCAGTAGATTTGTAAGGGCTGAGGCAGGGCACTTTTACGGTTTCTGCATTGAAATTTTCCACAAGGTGCGAAGTCGTTTGAATTATACTCTGCATTATGAATTTCAGGCCTTTGATGGCTCGTATGATGATCTGGTAGATCAAGTCCATAACAAGAAATTGTATGCTTTTCATGTTCAATCTATAACGAAGACTTTTGATGCTGCTGTCGGTGATATCACAGCACTAGCAAACCGAGCGGACAAAGTGGAATTCACTCAGCCATATATGGAGTCTGGTTTGTCAATGATAGTTCCAGAAAAATCTGAACAAATAGCATGGCTGTTTACGAAACCTCTCACCTGGCAAATGTGGGCGGTGACATGTGCCATCTTAGTCTACACAATCTTGGTAGTATGGTTCCTGGAGCGCCTGTCCAATCCAGAATTTAATGGCACATTGTGGAATCAGATTGGCACAGCAACTTGGTTCACCTTCACCTCCTTGTTCTTTTCTCACAGAGAGAAAATCACAAACTACTTAACTCGAGTAGTAGTCATAGTTTGGCTGTTTGTTGTGTTGATCCTATCCTCAAGCTACACTGCTAATTTGTCATCAATGCTCACCATCCAACGATTGAGACCAAATGTAACAGACATTGAAATGCTAAAGAGAACCAACTCAAAAGTAGGCTTGGACGGGGATTCATCATTTATCACAAATTTCTTAGTGAATGTATTTCATTTCGACCGAAATAACATCATCAACATAAGCTGCCAATCCGAATACACTGAGGCATTCAAAAACAAAAGTATATCTGCTGCCTTTCTTGAATTCCCATATGCAAAAGCATTCATGAAACACTACTGCAATGGATATACTGCAAGCACACTCACCTTTAGATTTGGAGGACTATGCTTTATATTTCAGAAAGGCTCTCCAATTGCCGGGGATTTCACCATGGCCATTCTAGAGTTATTGGAGGATGGAGAAGTGAAGTCACTTGAGGATACTTGGTTGACACCGAATCCTGAGTGTCCAAACAATTCAACTTCCGGTGAACCCGAAAGCTTGAACGTCAAGAATTTTATGGGCCTTTATGTAATATCTGCTGCTACTTCCACCATTTGCTTTCTATCATCTCTCACTATCCAGTTGAAGAAGTTTCACCGAGACCAGGAAGCATACGGAGGCAATGCAAGTGATAAAAGTGTTTGGAACAGAACACTTAGAATGGCAAGATTTGTATGTAATAGAGAGCTCCATGTTCCAAGCAGAGCTCCAAGTTCTGTTGATGTGCCGGAATTGACTTCTTTCCAATGGGAGCCTGCGATCACTTCCACTTTTCCACCACTCAGAAGCATCATTTATCCACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

906

Amino Acids

102.38

Weight (kDa)

8.54

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	52 - 349	7.5e-20	Periplasmic binding protein
ANF_receptor	PF01094	56 - 375	9.5e-37	Receptor family ligand binding region
SBP_bac_3	PF00497	461 - 788	3.4e-09	Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd	PF10613	463 - 554	3e-09	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	568 - 819	1.2e-30	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	842
AccB1I	GGYRCC	1 cut(s)	400
AccB7I	CCANNNNNTGG	1 cut(s)	1205
AccBSI	CCGCTC	1 cut(s)	1601
AccI	GTMKAC	1 cut(s)	1740
AciI	CCGC	4 cut(s)	398, 433, 1601, 1718
AclWI	GGATC	3 cut(s)	251, 1154, 1918
AcoI	YGGCCR	3 cut(s)	437, 1274, 2304
AcsI	RAATTY	9 cut(s)	378, 969, 1416, 1463, 1613, 1787, 2062, 2174, 2425
AcuI	CTGAAG	2 cut(s)	303, 710
AdeI	CACNNNGTG	2 cut(s)	1429, 1803
AfaI	GTAC	2 cut(s)	1039, 1066
AfiI	CCNNNNNNNGG	4 cut(s)	1143, 1205, 2288, 2518
AflIII	ACRYGT	1 cut(s)	1724
AhlI	ACTAGT	1 cut(s)	899
AjnI	CCWGG	7 cut(s)	959, 964, 1276, 1351, 1703, 1764, 2517
Alw21I	GWGCWC	4 cut(s)	376, 1300, 2604, 2623
Alw26I	GTCTC	5 cut(s)	323, 786, 1189, 1975, 2508
AlwI	GGATC	3 cut(s)	251, 1154, 1918
Ama87I	CYCGRG	2 cut(s)	708, 1887
AoxI	GGCC	7 cut(s)	437, 962, 1014, 1274, 1470, 2304, 2434
ApeKI	GCWGC	8 cut(s)	188, 269, 344, 470, 1565, 2115, 2162, 2453
ApoI	RAATTY	9 cut(s)	378, 969, 1416, 1463, 1613, 1787, 2062, 2174, 2425
AseI	ATTAAT	1 cut(s)	750
AspLEI	GCGC	1 cut(s)	1773
AspS9I	GGNCC	1 cut(s)	2434
AsuC2I	CCSGG	1 cut(s)	2290
AvaI	CYCGRG	2 cut(s)	708, 1887
AxyI	CCTNAGG	1 cut(s)	636
BaeGI	GKGCMC	1 cut(s)	1395
BaeI	ACNNNNGTAYC	2 cut(s)	440, 473
BalI	TGGCCA	3 cut(s)	439, 1276, 2306
BanI	GGYRCC	1 cut(s)	400
BanII	GRGCYC	4 cut(s)	376, 1300, 2604, 2623
BbsI	GAAGAC	1 cut(s)	1559
Bbv12I	GWGCWC	4 cut(s)	376, 1300, 2604, 2623
BbvCI	CCTCAGC	1 cut(s)	1383
BbvI	GCAGC	8 cut(s)	200, 256, 331, 457, 1552, 2102, 2149, 2440
BccI	CCATC	7 cut(s)	458, 539, 769, 1472, 1739, 1976, 2321
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	7 cut(s)	961, 966, 1278, 1353, 1705, 1766, 2519
BciVI	GTATCC	2 cut(s)	951, 2344
BclI	TGATCA	1 cut(s)	991
BcnI	CCSGG	1 cut(s)	2290
BcoDI	GTCTC	5 cut(s)	323, 786, 1189, 1975, 2508
BcuI	ACTAGT	1 cut(s)	899
BfaI	CTAG	9 cut(s)	242, 350, 459, 572, 900, 999, 1589, 2312, 2719
BfoI	RGCGCY	1 cut(s)	1774
BfuI	GTATCC	2 cut(s)	951, 2344
BmcAI	AGTACT	1 cut(s)	1039
Bme1390I	CCNGG	8 cut(s)	961, 966, 1278, 1353, 1705, 1766, 2290, 2519
BmeT110I	CYCGRG	2 cut(s)	708, 1887
BmgT120I	GGNCC	1 cut(s)	2434
BmiI	GGNNCC	4 cut(s)	402, 1350, 1763, 2667
BmrFI	CCNGG	8 cut(s)	961, 966, 1278, 1353, 1705, 1766, 2290, 2519
BmsI	GCATC	5 cut(s)	58, 628, 1246, 1552, 2712
BpiI	GAAGAC	1 cut(s)	1559
BpmI	CTGGAG	2 cut(s)	943, 1787
Bpu10I	CCTNAGC	1 cut(s)	1383
BpuEI	CTTGAG	3 cut(s)	825, 1918, 2366
BpuMI	CCSGG	1 cut(s)	2290
BsaI	GGTCTC	3 cut(s)	1189, 1975, 2508
BsaJI	CCNNGG	5 cut(s)	177, 585, 1277, 2289, 2301
BsaWI	WCCGGW	1 cut(s)	2396
BsaXI	ACNNNNNCTCC	6 cut(s)	1021, 1051, 1107, 1137, 1760, 1790
Bsc4I	CCNNNNNNNGG	4 cut(s)	1143, 1205, 2288, 2518
Bse1I	ACTGG	5 cut(s)	383, 518, 829, 1365, 2494
Bse21I	CCTNAGG	1 cut(s)	636
Bse3DI	GCAATG	4 cut(s)	486, 1320, 2218, 2542
BseBI	CCWGG	7 cut(s)	961, 966, 1278, 1353, 1705, 1766, 2519
BseDI	CCNNGG	5 cut(s)	177, 585, 1277, 2289, 2301
BseGI	GGATG	2 cut(s)	1968, 2332
BseLI	CCNNNNNNNGG	4 cut(s)	1143, 1205, 2288, 2518
BseMI	GCAATG	4 cut(s)	486, 1320, 2218, 2542
BseMII	CTCAG	8 cut(s)	639, 650, 1227, 1374, 1634, 2124, 2364, 2710
BseNI	ACTGG	5 cut(s)	383, 518, 829, 1365, 2494
BseRI	GAGGAG	1 cut(s)	1042
BseSI	GKGCMC	1 cut(s)	1395
BseXI	GCAGC	8 cut(s)	200, 256, 331, 457, 1552, 2102, 2149, 2440
BseYI	CCCAGC	1 cut(s)	1308
BsgI	GTGCAG	1 cut(s)	1284
Bsh1285I	CGRYCG	1 cut(s)	2092
BshFI	GGCC	7 cut(s)	439, 964, 1016, 1276, 1472, 2306, 2436
BshNI	GGYRCC	1 cut(s)	400
BsiEI	CGRYCG	1 cut(s)	2092
BsiHKAI	GWGCWC	4 cut(s)	376, 1300, 2604, 2623
BsiHKCI	CYCGRG	2 cut(s)	708, 1887
BsiSI	CCGG	3 cut(s)	2289, 2397, 2642
BslFI	GGGAC	2 cut(s)	580, 792
BslI	CCNNNNNNNGG	4 cut(s)	1143, 1205, 2288, 2518
BsmAI	GTCTC	5 cut(s)	323, 786, 1189, 1975, 2508
BsmFI	GGGAC	2 cut(s)	580, 792
BsmI	GAATGC	3 cut(s)	926, 2138, 2192
BsnI	GGCC	7 cut(s)	439, 964, 1016, 1276, 1472, 2306, 2436
Bso31I	GGTCTC	3 cut(s)	1189, 1975, 2508
BsoBI	CYCGRG	2 cut(s)	708, 1887
Bsp1286I	GDGCHC	5 cut(s)	376, 1300, 1395, 2604, 2623
Bsp143I	GATC	7 cut(s)	256, 991, 1146, 1492, 1501, 1923, 2673
Bsp19I	CCATGG	2 cut(s)	177, 2301
BspACI	CCGC	4 cut(s)	398, 433, 1601, 1718
BspANI	GGCC	7 cut(s)	439, 964, 1016, 1276, 1472, 2306, 2436
BspCNI	CTCAG	8 cut(s)	640, 649, 1226, 1375, 1633, 2125, 2365, 2709
BspHI	TCATGA	2 cut(s)	850, 2196
BspLI	GGNNCC	4 cut(s)	402, 1350, 1763, 2667
BspPI	GGATC	3 cut(s)	251, 1154, 1918
BspQI	GCTCTTC	2 cut(s)	597, 984
BspT107I	GGYRCC	1 cut(s)	400
BspTNI	GGTCTC	3 cut(s)	1189, 1975, 2508
BsrBI	CCGCTC	1 cut(s)	1601
BsrDI	GCAATG	4 cut(s)	486, 1320, 2218, 2542
BsrI	ACTGG	5 cut(s)	383, 518, 829, 1365, 2494
BssECI	CCNNGG	5 cut(s)	177, 585, 1277, 2289, 2301
BssMI	GATC	7 cut(s)	256, 991, 1146, 1492, 1501, 1923, 2673
BssT1I	CCWWGG	2 cut(s)	177, 2301
Bst2UI	CCWGG	7 cut(s)	961, 966, 1278, 1353, 1705, 1766, 2519
Bst4CI	ACNGT	5 cut(s)	25, 554, 1037, 1069, 1403
Bst6I	CTCTTC	3 cut(s)	597, 784, 984
BstC8I	GCNNGC	3 cut(s)	437, 2227, 2670
BstDSI	CCRYGG	2 cut(s)	177, 2301
BstF5I	GGATG	2 cut(s)	1968, 2332
BstH2I	RGCGCY	1 cut(s)	1774
BstHHI	GCGC	1 cut(s)	1773
BstKTI	GATC	7 cut(s)	259, 994, 1149, 1495, 1504, 1926, 2676
BstMAI	GTCTC	5 cut(s)	323, 786, 1189, 1975, 2508
BstMBI	GATC	7 cut(s)	256, 991, 1146, 1492, 1501, 1923, 2673
BstMCI	CGRYCG	1 cut(s)	2092
BstMWI	GCNNNNNNNGC	5 cut(s)	278, 353, 688, 983, 1598
BstNI	CCWGG	7 cut(s)	961, 966, 1278, 1353, 1705, 1766, 2519
BstNSI	RCATGY	1 cut(s)	1728
BstSCI	CCNGG	8 cut(s)	959, 964, 1276, 1351, 1703, 1764, 2288, 2517
BstSLI	GKGCMC	1 cut(s)	1395
BstV1I	GCAGC	8 cut(s)	200, 256, 331, 457, 1552, 2102, 2149, 2440
BstV2I	GAAGAC	1 cut(s)	1559
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
Bsu36I	CCTNAGG	1 cut(s)	636
BsuI	GTATCC	2 cut(s)	951, 2344
BsuRI	GGCC	7 cut(s)	439, 964, 1016, 1276, 1472, 2306, 2436
BtgI	CCRYGG	2 cut(s)	177, 2301
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	1968, 2332
BtsI	GCAGTG	1 cut(s)	1941
BtsIMutI	CAGTG	4 cut(s)	390, 1074, 1941, 2130
Cac8I	GCNNGC	3 cut(s)	437, 2227, 2670
CciI	TCATGA	2 cut(s)	850, 2196
CfoI	GCGC	1 cut(s)	1773
Cfr13I	GGNCC	1 cut(s)	2434
Csp6I	GTAC	2 cut(s)	1038, 1065
CviQI	GTAC	2 cut(s)	1038, 1065
DpnI	GATC	7 cut(s)	258, 993, 1148, 1494, 1503, 1925, 2675
DpnII	GATC	7 cut(s)	256, 991, 1146, 1492, 1501, 1923, 2673
DraIII	CACNNNGTG	2 cut(s)	1429, 1803
DrdI	GACNNNNNNGTC	1 cut(s)	842
DseDI	GACNNNNNNGTC	1 cut(s)	842
EaeI	YGGCCR	3 cut(s)	437, 1274, 2304
Eam1104I	CTCTTC	3 cut(s)	597, 784, 984
EarI	CTCTTC	3 cut(s)	597, 784, 984
Ecl136II	GAGCTC	4 cut(s)	374, 1298, 2602, 2621
Eco130I	CCWWGG	2 cut(s)	177, 2301
Eco147I	AGGCCT	1 cut(s)	1472
Eco24I	GRGCYC	4 cut(s)	376, 1300, 2604, 2623
Eco31I	GGTCTC	3 cut(s)	1189, 1975, 2508
Eco32I	GATATC	1 cut(s)	1579
Eco53kI	GAGCTC	4 cut(s)	374, 1298, 2602, 2621
Eco57I	CTGAAG	2 cut(s)	303, 710
Eco81I	CCTNAGG	1 cut(s)	636
Eco88I	CYCGRG	2 cut(s)	708, 1887
EcoICRI	GAGCTC	4 cut(s)	374, 1298, 2602, 2621
EcoRI	GAATTC	2 cut(s)	1613, 2174
EcoRII	CCWGG	7 cut(s)	959, 964, 1276, 1351, 1703, 1764, 2517
EcoRV	GATATC	1 cut(s)	1579
EcoT14I	CCWWGG	2 cut(s)	177, 2301
EcoT22I	ATGCAT	1 cut(s)	488
EcoT38I	GRGCYC	4 cut(s)	376, 1300, 2604, 2623
ErhI	CCWWGG	2 cut(s)	177, 2301
FaqI	GGGAC	2 cut(s)	580, 792
FauNDI	CATATG	2 cut(s)	988, 2182
FbaI	TGATCA	1 cut(s)	991
FblI	GTMKAC	1 cut(s)	1740
FokI	GGATG	2 cut(s)	1955, 2339
FriOI	GRGCYC	4 cut(s)	376, 1300, 2604, 2623
FspBI	CTAG	9 cut(s)	242, 350, 459, 572, 900, 999, 1589, 2312, 2719
GlaI	GCGC	1 cut(s)	1772
GsaI	CCCAGC	1 cut(s)	1312
GsuI	CTGGAG	2 cut(s)	943, 1787
HaeII	RGCGCY	1 cut(s)	1774
HaeIII	GGCC	7 cut(s)	439, 964, 1016, 1276, 1472, 2306, 2436
HapII	CCGG	3 cut(s)	2289, 2397, 2642
HhaI	GCGC	1 cut(s)	1773
Hin6I	GCGC	1 cut(s)	1771
HinP1I	GCGC	1 cut(s)	1771
HincII	GTYRAC	2 cut(s)	1292, 2361
HindII	GTYRAC	2 cut(s)	1292, 2361
HindIII	AAGCTT	2 cut(s)	689, 2410
HpaII	CCGG	3 cut(s)	2289, 2397, 2642
Hpy166II	GTNNAC	7 cut(s)	1153, 1292, 1689, 1741, 1833, 2361, 2402
Hpy188I	TCNGA	9 cut(s)	158, 586, 649, 1216, 1669, 1812, 2125, 2271, 2699
Hpy8I	GTNNAC	7 cut(s)	1153, 1292, 1689, 1741, 1833, 2361, 2402
HpyAV	CCTTC	6 cut(s)	242, 298, 854, 1106, 1157, 1846
HpyCH4III	ACNGT	5 cut(s)	25, 554, 1037, 1069, 1403
HpyCH4IV	ACGT	2 cut(s)	455, 2418
HpyF10VI	GCNNNNNNNGC	5 cut(s)	278, 353, 688, 983, 1598
HpySE526I	ACGT	2 cut(s)	455, 2418
HspAI	GCGC	1 cut(s)	1771
Ksp22I	TGATCA	1 cut(s)	991
Kzo9I	GATC	7 cut(s)	256, 991, 1146, 1492, 1501, 1923, 2673
LguI	GCTCTTC	2 cut(s)	597, 984
LmnI	GCTCC	6 cut(s)	128, 1303, 1768, 2607, 2626, 2665
Lsp1109I	GCAGC	8 cut(s)	200, 256, 331, 457, 1552, 2102, 2149, 2440
LweI	GCATC	5 cut(s)	58, 628, 1246, 1552, 2712
MaeI	CTAG	9 cut(s)	242, 350, 459, 572, 900, 999, 1589, 2312, 2719
MaeII	ACGT	2 cut(s)	455, 2418
MaeIII	GTNAC	6 cut(s)	115, 548, 1031, 1720, 1990, 2340
MalI	GATC	7 cut(s)	258, 993, 1148, 1494, 1503, 1925, 2675
MbiI	CCGCTC	1 cut(s)	1601
MboI	GATC	7 cut(s)	256, 991, 1146, 1492, 1501, 1923, 2673
MfeI	CAATTG	1 cut(s)	2283
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	5 cut(s)	376, 1300, 1395, 2604, 2623
MlsI	TGGCCA	3 cut(s)	439, 1276, 2306
MluNI	TGGCCA	3 cut(s)	439, 1276, 2306
MlyI	GAGTC	3 cut(s)	788, 950, 1643
MmeI	TCCRAC	2 cut(s)	106, 1996
Mox20I	TGGCCA	3 cut(s)	439, 1276, 2306
Mph1103I	ATGCAT	1 cut(s)	488
MscI	TGGCCA	3 cut(s)	439, 1276, 2306
MseI	TTAA	7 cut(s)	144, 654, 750, 1061, 1091, 1791, 1883
MslI	CAYNNNNRTG	2 cut(s)	1022, 2003
Msp20I	TGGCCA	3 cut(s)	439, 1276, 2306
MspA1I	CMGCKG	3 cut(s)	191, 435, 743
MspI	CCGG	3 cut(s)	2289, 2397, 2642
MspR9I	CCNGG	8 cut(s)	961, 966, 1278, 1353, 1705, 1766, 2290, 2519
MunI	CAATTG	1 cut(s)	2283
Mva1269I	GAATGC	3 cut(s)	926, 2138, 2192
MvaI	CCWGG	7 cut(s)	961, 966, 1278, 1353, 1705, 1766, 2519
MwoI	GCNNNNNNNGC	5 cut(s)	278, 353, 688, 983, 1598
NciI	CCSGG	1 cut(s)	2290
NcoI	CCATGG	2 cut(s)	177, 2301
NdeI	CATATG	2 cut(s)	988, 2182
NdeII	GATC	7 cut(s)	256, 991, 1146, 1492, 1501, 1923, 2673
NlaIV	GGNNCC	4 cut(s)	402, 1350, 1763, 2667
NmeAIII	GCCGAG	1 cut(s)	776
NmuCI	GTSAC	3 cut(s)	115, 1720, 2340
NsiI	ATGCAT	1 cut(s)	488
NspI	RCATGY	1 cut(s)	1728
PaeR7I	CTCGAG	1 cut(s)	1887
PagI	TCATGA	2 cut(s)	850, 2196
PceI	AGGCCT	1 cut(s)	1472
PciI	ACATGT	1 cut(s)	1724
PciSI	GCTCTTC	2 cut(s)	597, 984
PctI	GAATGC	3 cut(s)	926, 2138, 2192
PfeI	GAWTC	8 cut(s)	153, 217, 245, 873, 1282, 1807, 2045, 2368
PflMI	CCANNNNNTGG	1 cut(s)	1205
PfoI	TCCNGGA	1 cut(s)	1764
PleI	GAGTC	3 cut(s)	788, 950, 1642
PpsI	GAGTC	3 cut(s)	788, 950, 1642
PscI	ACATGT	1 cut(s)	1724
PshBI	ATTAAT	1 cut(s)	750
Psp124BI	GAGCTC	4 cut(s)	376, 1300, 2604, 2623
Psp6I	CCWGG	7 cut(s)	959, 964, 1276, 1351, 1703, 1764, 2517
PspFI	CCCAGC	1 cut(s)	1308
PspGI	CCWGG	7 cut(s)	959, 964, 1276, 1351, 1703, 1764, 2517
PspN4I	GGNNCC	4 cut(s)	402, 1350, 1763, 2667
PspPI	GGNCC	1 cut(s)	2434
PspXI	VCTCGAGB	1 cut(s)	1887
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	2 cut(s)	191, 743
RsaI	GTAC	2 cut(s)	1039, 1066
RsaNI	GTAC	2 cut(s)	1038, 1065
RseI	CAYNNNNRTG	2 cut(s)	1022, 2003
SacI	GAGCTC	4 cut(s)	376, 1300, 2604, 2623
SapI	GCTCTTC	2 cut(s)	597, 984
SaqAI	TTAA	7 cut(s)	144, 654, 750, 1061, 1091, 1791, 1883
Sau3AI	GATC	7 cut(s)	256, 991, 1146, 1492, 1501, 1923, 2673
Sau96I	GGNCC	1 cut(s)	2434
ScaI	AGTACT	1 cut(s)	1039
SchI	GAGTC	3 cut(s)	788, 950, 1643
ScrFI	CCNGG	8 cut(s)	961, 966, 1278, 1353, 1705, 1766, 2290, 2519
SduI	GDGCHC	5 cut(s)	376, 1300, 1395, 2604, 2623
SfaNI	GCATC	5 cut(s)	58, 628, 1246, 1552, 2712
Sfr274I	CTCGAG	1 cut(s)	1887
SlaI	CTCGAG	1 cut(s)	1887
SmiMI	CAYNNNNRTG	2 cut(s)	1022, 2003
SmlI	CTYRAG	4 cut(s)	840, 1887, 1933, 2345
SmoI	CTYRAG	4 cut(s)	840, 1887, 1933, 2345
SpeI	ACTAGT	1 cut(s)	899
SseBI	AGGCCT	1 cut(s)	1472
SsiI	CCGC	4 cut(s)	398, 433, 1601, 1718
SspMI	CTAG	9 cut(s)	242, 350, 459, 572, 900, 999, 1589, 2312, 2719
SstI	GAGCTC	4 cut(s)	376, 1300, 2604, 2623
StuI	AGGCCT	1 cut(s)	1472
StyD4I	CCNGG	8 cut(s)	959, 964, 1276, 1351, 1703, 1764, 2288, 2517
StyI	CCWWGG	2 cut(s)	177, 2301
TaaI	ACNGT	5 cut(s)	25, 554, 1037, 1069, 1403
TaiI	ACGT	2 cut(s)	458, 2421
TaqI	TCGA	5 cut(s)	151, 370, 982, 1888, 2088
TaqII	GACCGA	1 cut(s)	2106
TatI	WGTACW	2 cut(s)	1037, 1064
TauI	GCSGC	2 cut(s)	401, 435
TfiI	GAWTC	8 cut(s)	153, 217, 245, 873, 1282, 1807, 2045, 2368
Tru1I	TTAA	7 cut(s)	144, 654, 750, 1061, 1091, 1791, 1883
Tru9I	TTAA	7 cut(s)	144, 654, 750, 1061, 1091, 1791, 1883
TscAI	CASTG	4 cut(s)	390, 1074, 1948, 2137
TseFI	GTSAC	3 cut(s)	115, 1720, 2340
TseI	GCWGC	8 cut(s)	188, 269, 344, 470, 1565, 2115, 2162, 2453
Tsp45I	GTSAC	3 cut(s)	115, 1720, 2340
TspGWI	ACGGA	1 cut(s)	2544
TspRI	CASTG	4 cut(s)	390, 1074, 1948, 2137
Van91I	CCANNNNNTGG	1 cut(s)	1205
VspI	ATTAAT	1 cut(s)	750
XapI	RAATTY	9 cut(s)	378, 969, 1416, 1463, 1613, 1787, 2062, 2174, 2425
XbaI	TCTAGA	2 cut(s)	241, 2311
XceI	RCATGY	1 cut(s)	1728
XhoI	CTCGAG	1 cut(s)	1887
XmiI	GTMKAC	1 cut(s)	1740
XspI	CTAG	9 cut(s)	242, 350, 459, 572, 900, 999, 1589, 2312, 2719
ZrmI	AGTACT	1 cut(s)	1039
Zsp2I	ATGCAT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.