Rw5G007240

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
7497574 .. 7500722
3149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G007240.1

Sequence Viewer

Length: 2769 bp
ATGTCTTCTCCCTCTGCAAACCTTTACAAAGTCAAAACGATTTGGCTCTTGTCGTCTCTGCTTATCTATTTGTTCATCATTCTCTCCAATGGAGTTGCAGCTCAAAATGATATCAGTGTCACAAACGTTGGAGCAATCATTGATCTTAATTCTCGTATCGGCAAAGAGCAGAAAGTTGCCATGGAAATTGCAGCTGAAAGCTTCAACAACAAGTCCAGCACTCATGAACTAATCCTTCATTTTCGAAACTCACTCGGAGAACCCTTTCGTGCTGCTTCTGATGCTGAAGAGTTGATAAAGGAAGAAAAAGTACAAGTGATTGTTGGCATGGAGTATTGGCCAGAAGCAGTTCAAGTAGCTGATCATGTTAAAAACCAATCTCAAGTTGTTCCGGTAGTTTCATTTGGTGCACCTCTTATAACTCCACCAATAATCCAACACCGGTGGCCTTTCTTGATACGAATGGCAAGCAATGGATCAGCTCAAATGAAATGCATTGCAGACATAGTTGCTGCATACAATTGGAAAAGGGTTGTTGTGATATACGAAGACGATGGTTATGGTGGTTATATCGGATTGCTATCTCTTTTATCTGAGGCTCTTCAAGATGCTAATGCAAAGATTGAGAATCATTTGGTTCTTCCGAGACTAAATAATTCTTCGGAGTCTAAGCCTGATTGGGATGAAGTAGAAGAGCTGTTGAAGCTTCCCACCTTTCAGTCTCGGGTGTTTATTGTTCTTCAATCATCTTTACCAACAGTGACTAATCTGTTCAGAGTGGCTAAGAAGATGGGACTTGTAGGGAGAGAGTCAGCTTGGATAATCACAGAATGTATCACCAGTTTGCTTGACCCTCAAGGTAGCAGCGATATGGAAGGAACTCTGGGAATCAAGACCTACTACAACGAGTCTAGTAGTTCTTATGTTGAATTTCAGAAGGAATTCCAAACCAAGTATGCAGAAGGAAATAACTCCCATCCAGGAATTTATACTCTTCGAGCATATGATACTATTAATGTCATTTCACAGGCCATAGAAAGAATGCCTAATAACACCACTAGTACTAGCCTTCAAGGTATGATAACTAGATTGTTGAGTACTTACAAGGGTTTAAGTGGGGATATGCACTTAAGCAGATCAGGTGAAGCACTGTTGGATTCTCCGAGACTCAGGATCGTAAATGTTGTGGGTGGGAAGATGAACACAGAGTTAAACTTTTGGACACCAAATGTTGGGTTCTCAGAAGGCCTTGACACAAATAGAATTGATGTTGTTGGTAAAGTAATTTGGCCTGGGAACCTAAGCCGTACCCCGAAAGGATGGGCAATGCCTAGTGTTGAAAAGCCAATGAGAATTGGGGTTCCAGGTAAAACTTCCTTCAGCAAATTTGTAAAGGTGGAGGATAAGGACAATCCTGATGAGAGTACATATGATGGTTTCTGCATTCAAATTTTCTATAAGGTTTTAAGTCGTTTGAATTATCCTCTGCCGTACGAGTTTCATGCTGACGATGGAATCTATGATGACCTGGTTGAAAAAGTCCATAACAAGACCTATGATGCTGTTGTTGGTGATATAACCGTTCTAGCTGACCGAATGGACAAGGTGGAATTCACTCAGCCCTATATGTGGTCAGGGTTGTCAATGATAGTACCAGAAGTAACTGATGAGGAGGCAACATGGATGTTTATGAAACCTTTTACATGGGACATGTGGGTGGTGACCAGTTCCATTTTAATCTACACAATGTTGGTAGTATGGTTCCTAGAGCGGCCAACCAATCCCGAATTTGGTGGTCCATTGAAGGATCAAATTGGTACAGCAATTTGGTTCACCTTCTCCTCTTTATTCTTTGCTCACAGAGAAAAAGTCTATAGCAACTTAACTCGAGTAGTTTTTATTGTATGGCTGTTTGTTGTATTGATCCTAACCTCAAGCTACACTGCTAATCTCTCTTCAATGCTCACCGTTCAACGACTGAAACCAAATGTAACAGACATCGAAATGCTAAAAAGAACCAATGCAACAGTTGGTTTGGATGGGGATTCATTCGTGTACAAATACATGGTGGAGGTTCTTGAATTCAAGGAAGTTAACTTGATGAACATATCGAGTGAATACAACTATACAGGCTACTTCAAAAACAAAACAATATTAGCTGCCTTTCTCGAAATCCCCTATGCTGAAGTATTCTTGAACAAGTATTGTGATGGATATACTGATAACACTCCTCCCAATAGATTTGGAGGCTTAAGCTTTATGTTTCAGAAAGGCTCTCCCATTGCCAGGGATTTCACTATGGCCATATTAGAGCTATTGGAGAATGGAGAGATTAAGAAACTTCAAAATGAATGGTTGTCGCCGGAGGAGGAGTGCACGAAGAATTCAACTTCCAATCGACCAGAAAGCTTAAGCCTCGACAGCTTTTCTGGCCTCTATGTAATATCCGGTGCTACTTCTACCTTCTGCTTTCTACTATCTCTTGCTATCTGGCTGAGGAGGTTTCAGCTCCAAGAAACAAATGAAGGCAATGCAAGTCCAAGTAATGAAAATATTTGGAACAAAACTGTCAGAATAGTAAAGTTTTTCAAACTTAGAGATCTTGAAATTCCAAATAGATCTCCAACTTTTGCTAGTTATATTGTGGATTGGACTACTCCAAGGTGGGGACATTACTCGCCTACCTCCAACACTCCTGAGCAGCCTCCATTGTTCACGCCAGCAGAGATCGAATGCACTCCAGTAGAACATACAGAAACAAGGGTTTAG

Protein Analysis

922

Amino Acids

104.3

Weight (kDa)

5.23

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 53 - 375 3e-13 Periplasmic binding protein
ANF_receptor PF01094 58 - 396 7.7e-37 Receptor family ligand binding region
Lig_chan-Glu_bd PF10613 468 - 552 9.3e-08 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 474 - 787 5.5e-12 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 568 - 818 3e-32 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 419
AccB7I CCANNNNNTGG 1 cut(s) 1232
AccBSI CCGCTC 1 cut(s) 1771
AciI CCGC 1 cut(s) 1771
AclI AACGTT 1 cut(s) 126
AclWI GGATC 4 cut(s) 484, 1181, 1815, 1918
AcoI YGGCCR 3 cut(s) 338, 1772, 2301
AcuI CTGAAG 3 cut(s) 306, 1363, 2205
AfaI GTAC 9 cut(s) 312, 1063, 1099, 1309, 1426, 1493, 1653, 1819, 2057
AfiI CCNNNNNNNGG 5 cut(s) 1232, 1629, 1790, 2286, 2666
AflII CTTAAG 3 cut(s) 1129, 2251, 2410
AflIII ACRYGT 1 cut(s) 1710
AgeI ACCGGT 1 cut(s) 441
AhlI ACTAGT 1 cut(s) 1058
AjnI CCWGG 5 cut(s) 979, 1291, 1363, 1527, 2285
Alw21I GWGCWC 2 cut(s) 412, 2378
Alw26I GTCTC 4 cut(s) 60, 640, 726, 1159
Alw44I GTGCAC 2 cut(s) 408, 2374
AlwI GGATC 4 cut(s) 484, 1181, 1815, 1918
Ama87I CYCGRG 2 cut(s) 723, 1887
AoxI GGCC 8 cut(s) 338, 446, 1029, 1246, 1289, 1772, 2301, 2431
ApaLI GTGCAC 2 cut(s) 408, 2374
ApeKI GCWGC 7 cut(s) 98, 191, 272, 512, 864, 2159, 2701
AseI ATTAAT 1 cut(s) 1014
AsiGI ACCGGT 1 cut(s) 441
Asp700I GAANNNNTTC 3 cut(s) 264, 348, 941
AspS9I GGNCC 1 cut(s) 1796
AsuHPI GGTGA 6 cut(s) 829, 1154, 1583, 1732, 1825, 1957
AsuII TTCGAA 1 cut(s) 244
AvaI CYCGRG 2 cut(s) 723, 1887
AvaII GGWCC 1 cut(s) 1796
BaeGI GKGCMC 2 cut(s) 412, 2378
BalI TGGCCA 2 cut(s) 340, 2303
BarI GAAGNNNNNNTAC 2 cut(s) 294, 326
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 2 cut(s) 412, 2378
BbvCI CCTCAGC 1 cut(s) 2495
BbvI GCAGC 7 cut(s) 110, 203, 259, 499, 876, 2146, 2713
BccI CCATC 8 cut(s) 548, 784, 984, 1314, 1427, 1505, 2033, 2204
BceAI ACGGC 2 cut(s) 1290, 1474
BcgI CGANNNNNNTGC 2 cut(s) 1484, 1518
BciT130I CCWGG 5 cut(s) 981, 1293, 1365, 1529, 2287
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 4 cut(s) 60, 640, 726, 1159
BcuI ACTAGT 1 cut(s) 1058
BfaI CTAG 8 cut(s) 912, 1059, 1065, 1086, 1332, 1586, 1766, 2634
BfmI CTRYAG 1 cut(s) 1873
BfrI CTTAAG 3 cut(s) 1129, 2251, 2410
BglII AGATCT 2 cut(s) 2599, 2618
BisI GCNGC 8 cut(s) 99, 192, 273, 513, 865, 1772, 2160, 2702
BlsI GCNGC 8 cut(s) 100, 193, 274, 514, 866, 1773, 2161, 2703
BmcAI AGTACT 2 cut(s) 1063, 1099
Bme1390I CCNGG 5 cut(s) 981, 1293, 1365, 1529, 2287
Bme18I GGWCC 1 cut(s) 1796
BmeT110I CYCGRG 2 cut(s) 723, 1887
BmgT120I GGNCC 1 cut(s) 1796
BmiI GGNNCC 3 cut(s) 1298, 1362, 1763
BmrFI CCNGG 5 cut(s) 981, 1293, 1365, 1529, 2287
BmsI GCATC 3 cut(s) 271, 598, 1549
BpiI GAAGAC 1 cut(s) 555
BpmI CTGGAG 1 cut(s) 2724
Bpu10I CCTNAGC 3 cut(s) 1301, 2495, 2697
Bpu14I TTCGAA 1 cut(s) 244
BpuEI CTTGAG 3 cut(s) 366, 840, 1918
BsaBI GATNNNNATC 1 cut(s) 580
BsaJI CCNNGG 4 cut(s) 180, 1292, 2286, 2660
BsaWI WCCGGW 3 cut(s) 391, 441, 2447
BsaXI ACNNNNNCTCC 2 cut(s) 2357, 2387
Bsc4I CCNNNNNNNGG 5 cut(s) 1232, 1629, 1790, 2286, 2666
Bse118I RCCGGY 1 cut(s) 441
Bse1I ACTGG 3 cut(s) 840, 1725, 2741
Bse3DI GCAATG 5 cut(s) 478, 495, 1332, 2280, 2536
Bse8I GATNNNNATC 1 cut(s) 580
BseBI CCWGG 5 cut(s) 981, 1293, 1365, 1529, 2287
BseDI CCNNGG 4 cut(s) 180, 1292, 2286, 2660
BseGI GGATG 5 cut(s) 688, 976, 1325, 1689, 2044
BseJI GATNNNNATC 1 cut(s) 580
BseLI CCNNNNNNNGG 5 cut(s) 1232, 1629, 1790, 2286, 2666
BseMI GCAATG 5 cut(s) 478, 495, 1332, 2280, 2536
BseMII CTCAG 6 cut(s) 585, 1183, 1254, 1631, 2486, 2688
BseNI ACTGG 3 cut(s) 840, 1725, 2741
BseRI GAGGAG 6 cut(s) 1685, 1831, 2220, 2381, 2384, 2512
BseSI GKGCMC 2 cut(s) 412, 2378
BseXI GCAGC 7 cut(s) 110, 203, 259, 499, 876, 2146, 2713
BshFI GGCC 8 cut(s) 340, 448, 1031, 1248, 1291, 1774, 2303, 2433
BshTI ACCGGT 1 cut(s) 441
BsiHKAI GWGCWC 2 cut(s) 412, 2378
BsiHKCI CYCGRG 2 cut(s) 723, 1887
BsiSI CCGG 4 cut(s) 392, 442, 2363, 2448
BsiWI CGTACG 1 cut(s) 1491
BslFI GGGAC 3 cut(s) 807, 1721, 2682
BslI CCNNNNNNNGG 5 cut(s) 1232, 1629, 1790, 2286, 2666
BsmAI GTCTC 4 cut(s) 60, 640, 726, 1159
BsmBI CGTCTC 1 cut(s) 60
BsmFI GGGAC 3 cut(s) 807, 1721, 2682
BsmI GAATGC 3 cut(s) 1047, 1443, 2738
BsnI GGCC 8 cut(s) 340, 448, 1031, 1248, 1291, 1774, 2303, 2433
BsoBI CYCGRG 2 cut(s) 723, 1887
Bsp119I TTCGAA 1 cut(s) 244
Bsp1286I GDGCHC 2 cut(s) 412, 2378
Bsp1407I TGTACA 1 cut(s) 2055
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 1 cut(s) 1771
BspANI GGCC 8 cut(s) 340, 448, 1031, 1248, 1291, 1774, 2303, 2433
BspCNI CTCAG 6 cut(s) 586, 1182, 1253, 1630, 2487, 2689
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 3 cut(s) 1298, 1362, 1763
BspPI GGATC 4 cut(s) 484, 1181, 1815, 1918
BspQI GCTCTTC 2 cut(s) 606, 687
BspT104I TTCGAA 1 cut(s) 244
BspTI CTTAAG 3 cut(s) 1129, 2251, 2410
BsrBI CCGCTC 1 cut(s) 1771
BsrDI GCAATG 5 cut(s) 478, 495, 1332, 2280, 2536
BsrFI RCCGGY 1 cut(s) 441
BsrGI TGTACA 1 cut(s) 2055
BsrI ACTGG 3 cut(s) 840, 1725, 2741
BssAI RCCGGY 1 cut(s) 441
BssECI CCNNGG 4 cut(s) 180, 1292, 2286, 2660
BssT1I CCWWGG 2 cut(s) 180, 2660
Bst2UI CCWGG 5 cut(s) 981, 1293, 1365, 1529, 2287
Bst4CI ACNGT 6 cut(s) 760, 1152, 1582, 1969, 2029, 2569
Bst6I CTCTTC 5 cut(s) 282, 606, 687, 999, 1960
BstAFI CTTAAG 3 cut(s) 1129, 2251, 2410
BstAUI TGTACA 1 cut(s) 2055
BstBI TTCGAA 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 469, 2721
BstDSI CCRYGG 1 cut(s) 180
BstEII GGTNACC 1 cut(s) 1720
BstF5I GGATG 5 cut(s) 688, 976, 1325, 1689, 2044
BstMAI GTCTC 4 cut(s) 60, 640, 726, 1159
BstMWI GCNNNNNNNGC 4 cut(s) 281, 703, 2421, 2430
BstNI CCWGG 5 cut(s) 981, 1293, 1365, 1529, 2287
BstNSI RCATGY 1 cut(s) 1714
BstPI GGTNACC 1 cut(s) 1720
BstSCI CCNGG 5 cut(s) 979, 1291, 1363, 1527, 2285
BstSFI CTRYAG 1 cut(s) 1873
BstSLI GKGCMC 2 cut(s) 412, 2378
BstV1I GCAGC 7 cut(s) 110, 203, 259, 499, 876, 2146, 2713
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 2 cut(s) 2599, 2618
BstYI RGATCY 2 cut(s) 2599, 2618
BsuRI GGCC 8 cut(s) 340, 448, 1031, 1248, 1291, 1774, 2303, 2433
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 5 cut(s) 688, 976, 1325, 1689, 2044
BtsI GCAGTG 1 cut(s) 1941
BtsIMutI CAGTG 4 cut(s) 121, 765, 1148, 1941
Cac8I GCNNGC 2 cut(s) 469, 2721
CciI TCATGA 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 1796
CsiI ACCWGGT 1 cut(s) 1527
Csp6I GTAC 9 cut(s) 311, 1062, 1098, 1308, 1425, 1492, 1652, 1818, 2056
CspAI ACCGGT 1 cut(s) 441
CspCI CAANNNNNGTGG 2 cut(s) 425, 460
CviAII CATG 9 cut(s) 181, 224, 328, 365, 1502, 1680, 1704, 1711, 2065
CviQI GTAC 9 cut(s) 311, 1062, 1098, 1308, 1425, 1492, 1652, 1818, 2056
EaeI YGGCCR 3 cut(s) 338, 1772, 2301
Eam1104I CTCTTC 5 cut(s) 282, 606, 687, 999, 1960
EarI CTCTTC 5 cut(s) 282, 606, 687, 999, 1960
Eco130I CCWWGG 2 cut(s) 180, 2660
Eco147I AGGCCT 1 cut(s) 1248
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 1796
Eco57I CTGAAG 3 cut(s) 306, 1363, 2205
Eco88I CYCGRG 2 cut(s) 723, 1887
Eco91I GGTNACC 1 cut(s) 1720
EcoO65I GGTNACC 1 cut(s) 1720
EcoRI GAATTC 4 cut(s) 941, 1610, 2081, 2383
EcoRII CCWGG 5 cut(s) 979, 1291, 1363, 1527, 2285
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 180, 2660
EcoT22I ATGCAT 1 cut(s) 497
ErhI CCWWGG 2 cut(s) 180, 2660
Esp3I CGTCTC 1 cut(s) 60
FaeI CATG 9 cut(s) 184, 227, 331, 368, 1505, 1683, 1707, 1714, 2068
FaqI GGGAC 3 cut(s) 807, 1721, 2682
FatI CATG 9 cut(s) 180, 223, 327, 364, 1501, 1679, 1703, 1710, 2064
FauNDI CATATG 2 cut(s) 1003, 1429
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 8 cut(s) 99, 192, 273, 513, 865, 1772, 2160, 2702
FokI GGATG 5 cut(s) 695, 963, 1332, 1696, 2051
Fsp4HI GCNGC 8 cut(s) 99, 192, 273, 513, 865, 1772, 2160, 2702
FspBI CTAG 8 cut(s) 912, 1059, 1065, 1086, 1332, 1586, 1766, 2634
GluI GCNGC 8 cut(s) 99, 192, 273, 513, 865, 1772, 2160, 2702
GsuI CTGGAG 1 cut(s) 2724
HaeIII GGCC 8 cut(s) 340, 448, 1031, 1248, 1291, 1774, 2303, 2433
HapII CCGG 4 cut(s) 392, 442, 2363, 2448
Hin1II CATG 9 cut(s) 184, 227, 331, 368, 1505, 1683, 1707, 1714, 2068
HincII GTYRAC 1 cut(s) 2095
HindII GTYRAC 1 cut(s) 2095
HindIII AAGCTT 4 cut(s) 199, 704, 2254, 2407
HinfI GANTC 9 cut(s) 628, 665, 809, 888, 908, 1157, 1167, 1515, 2045
HpaI GTTAAC 1 cut(s) 2095
HpaII CCGG 4 cut(s) 392, 442, 2363, 2448
HphI GGTGA 6 cut(s) 829, 1154, 1583, 1732, 1825, 1957
Hpy166II GTNNAC 6 cut(s) 410, 1833, 2056, 2095, 2376, 2715
Hpy8I GTNNAC 6 cut(s) 410, 1833, 2056, 2095, 2376, 2715
HpyCH4III ACNGT 6 cut(s) 760, 1152, 1582, 1969, 2029, 2569
HpyCH4IV ACGT 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 4 cut(s) 281, 703, 2421, 2430
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 9 cut(s) 184, 227, 331, 368, 1505, 1683, 1707, 1714, 2068
Ksp22I TGATCA 1 cut(s) 361
KspAI GTTAAC 1 cut(s) 2095
LguI GCTCTTC 2 cut(s) 606, 687
LmnI GCTCC 2 cut(s) 131, 2514
Lsp1109I GCAGC 7 cut(s) 110, 203, 259, 499, 876, 2146, 2713
LweI GCATC 3 cut(s) 271, 598, 1549
MabI ACCWGGT 1 cut(s) 1527
MaeI CTAG 8 cut(s) 912, 1059, 1065, 1086, 1332, 1586, 1766, 2634
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 5 cut(s) 118, 760, 1660, 1720, 1990
MbiI CCGCTC 1 cut(s) 1771
MfeI CAATTG 1 cut(s) 520
MflI RGATCY 2 cut(s) 2599, 2618
MhlI GDGCHC 2 cut(s) 412, 2378
MlsI TGGCCA 2 cut(s) 340, 2303
MluNI TGGCCA 2 cut(s) 340, 2303
MlyI GAGTC 4 cut(s) 674, 818, 917, 1161
MmeI TCCRAC 5 cut(s) 109, 460, 1134, 2648, 2712
Mox20I TGGCCA 2 cut(s) 340, 2303
Mph1103I ATGCAT 1 cut(s) 497
MroXI GAANNNNTTC 3 cut(s) 264, 348, 941
MscI TGGCCA 2 cut(s) 340, 2303
MslI CAYNNNNRTG 2 cut(s) 1715, 2003
Msp20I TGGCCA 2 cut(s) 340, 2303
MspA1I CMGCKG 1 cut(s) 194
MspCI CTTAAG 3 cut(s) 1129, 2251, 2410
MspI CCGG 4 cut(s) 392, 442, 2363, 2448
MspR9I CCNGG 5 cut(s) 981, 1293, 1365, 1529, 2287
MunI CAATTG 1 cut(s) 520
Mva1269I GAATGC 3 cut(s) 1047, 1443, 2738
MvaI CCWGG 5 cut(s) 981, 1293, 1365, 1529, 2287
MwoI GCNNNNNNNGC 4 cut(s) 281, 703, 2421, 2430
NcoI CCATGG 1 cut(s) 180
NdeI CATATG 2 cut(s) 1003, 1429
NlaIII CATG 9 cut(s) 184, 227, 331, 368, 1505, 1683, 1707, 1714, 2068
NlaIV GGNNCC 3 cut(s) 1298, 1362, 1763
NmuCI GTSAC 3 cut(s) 118, 760, 1720
NsiI ATGCAT 1 cut(s) 497
NspI RCATGY 1 cut(s) 1714
NspV TTCGAA 1 cut(s) 244
PaeR7I CTCGAG 1 cut(s) 1887
PagI TCATGA 1 cut(s) 223
PceI AGGCCT 1 cut(s) 1248
PciI ACATGT 1 cut(s) 1710
PciSI GCTCTTC 2 cut(s) 606, 687
PctI GAATGC 3 cut(s) 1047, 1443, 2738
PdmI GAANNNNTTC 3 cut(s) 264, 348, 941
PfeI GAWTC 5 cut(s) 628, 888, 1157, 1515, 2045
Pfl23II CGTACG 1 cut(s) 1491
PflMI CCANNNNNTGG 1 cut(s) 1232
PfoI TCCNGGA 1 cut(s) 979
PinAI ACCGGT 1 cut(s) 441
PkrI GCNGC 8 cut(s) 100, 193, 274, 514, 866, 1773, 2161, 2703
PleI GAGTC 4 cut(s) 673, 817, 916, 1161
PpsI GAGTC 4 cut(s) 673, 817, 916, 1161
PscI ACATGT 1 cut(s) 1710
PshBI ATTAAT 1 cut(s) 1014
PsiI TTATAA 1 cut(s) 419
Psp1406I AACGTT 1 cut(s) 126
Psp6I CCWGG 5 cut(s) 979, 1291, 1363, 1527, 2285
PspEI GGTNACC 1 cut(s) 1720
PspGI CCWGG 5 cut(s) 979, 1291, 1363, 1527, 2285
PspLI CGTACG 1 cut(s) 1491
PspN4I GGNNCC 3 cut(s) 1298, 1362, 1763
PspPI GGNCC 1 cut(s) 1796
PspXI VCTCGAGB 1 cut(s) 1887
PsuI RGATCY 2 cut(s) 2599, 2618
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 9 cut(s) 312, 1063, 1099, 1309, 1426, 1493, 1653, 1819, 2057
RsaNI GTAC 9 cut(s) 311, 1062, 1098, 1308, 1425, 1492, 1652, 1818, 2056
RseI CAYNNNNRTG 2 cut(s) 1715, 2003
SapI GCTCTTC 2 cut(s) 606, 687
SatI GCNGC 8 cut(s) 99, 192, 273, 513, 865, 1772, 2160, 2702
Sau96I GGNCC 1 cut(s) 1796
ScaI AGTACT 2 cut(s) 1063, 1099
SchI GAGTC 4 cut(s) 674, 818, 917, 1161
ScrFI CCNGG 5 cut(s) 981, 1293, 1365, 1529, 2287
SduI GDGCHC 2 cut(s) 412, 2378
SexAI ACCWGGT 1 cut(s) 1527
SfaNI GCATC 3 cut(s) 271, 598, 1549
SfcI CTRYAG 1 cut(s) 1873
Sfr274I CTCGAG 1 cut(s) 1887
SfuI TTCGAA 1 cut(s) 244
SgrAI CRCCGGYG 1 cut(s) 441
SinI GGWCC 1 cut(s) 1796
SlaI CTCGAG 1 cut(s) 1887
SmiMI CAYNNNNRTG 2 cut(s) 1715, 2003
SmlI CTYRAG 7 cut(s) 381, 855, 1129, 1887, 1933, 2251, 2410
SmoI CTYRAG 7 cut(s) 381, 855, 1129, 1887, 1933, 2251, 2410
SpeI ACTAGT 1 cut(s) 1058
SseBI AGGCCT 1 cut(s) 1248
SsiI CCGC 1 cut(s) 1771
SspI AATATT 2 cut(s) 2154, 2554
SspMI CTAG 8 cut(s) 912, 1059, 1065, 1086, 1332, 1586, 1766, 2634
StuI AGGCCT 1 cut(s) 1248
StyD4I CCNGG 5 cut(s) 979, 1291, 1363, 1527, 2285
StyI CCWWGG 2 cut(s) 180, 2660
TaaI ACNGT 6 cut(s) 760, 1152, 1582, 1969, 2029, 2569
TaiI ACGT 1 cut(s) 129
TaqI TCGA 9 cut(s) 244, 997, 1888, 2001, 2111, 2169, 2398, 2418, 2730
TaqII GACCGA 1 cut(s) 1608
TatI WGTACW 5 cut(s) 310, 1061, 1097, 1424, 2055
TauI GCSGC 1 cut(s) 1774
TfiI GAWTC 5 cut(s) 628, 888, 1157, 1515, 2045
TscAI CASTG 4 cut(s) 121, 765, 1155, 1948
TseFI GTSAC 3 cut(s) 118, 760, 1720
TseI GCWGC 7 cut(s) 98, 191, 272, 512, 864, 2159, 2701
Tsp45I GTSAC 3 cut(s) 118, 760, 1720
TspRI CASTG 4 cut(s) 121, 765, 1155, 1948
Van91I CCANNNNNTGG 1 cut(s) 1232
Vha464I CTTAAG 3 cut(s) 1129, 2251, 2410
VneI GTGCAC 2 cut(s) 408, 2374
VpaK11BI GGWCC 1 cut(s) 1796
VspI ATTAAT 1 cut(s) 1014
XceI RCATGY 1 cut(s) 1714
XhoI CTCGAG 1 cut(s) 1887
XmnI GAANNNNTTC 3 cut(s) 264, 348, 941
XspI CTAG 8 cut(s) 912, 1059, 1065, 1086, 1332, 1586, 1766, 2634
ZrmI AGTACT 2 cut(s) 1063, 1099
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.