Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Forward (+)

87732622 .. 87734927

Gene Structure 2306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1782 bp

ATGGCTTTTCCCTGTACCAATACTTTTGACAAAGTCAAAAGACTTTGGCATCTGCTTCCTCTGCTGATCATAATCATAATCATCATCATCATCATCACTCTCTCCGATGGTGTTGAAGCTGAGGAAAATGAGATAACTGTCACAAATGTTGGAGCCATCCTTAATCTGAACTCTCGTATGGGTCAAGAACAGAGAACTGCCATGGAAGTTGCAGCTGAAAACTTCAACAACCATTCAAAGACTCATAGCGTTATCCTTCATTTTCGACACTCTGACAGAGATCCCTTGACTGCAGCTTCTGCTGCTCAAGACTTGATTAAAGAAAAAAAGGTAAAAATGCTAGTTGGCATGGAGACTTGGAATGAAGCAGCTCTAGTGGCTGATGTGGGGAACCGAGCTCAAGTTCCGGTGATTTCATTTGCAGCACCGGCTATAACCCCGCCTCTAGTGCAACGTCATTGGCCATTTTTGATACGAATGGCAAGCGATGGTGCTGCTCAGATGAAATGCATTGCAGATATAGTTTCTGCATACAATTGGAAAAGGGTTATTGCAATATATGAGGATGATGGTTATGGTGGTGATGCTGGGATGCTAGCTCTTTTATTTGAGGCTCTCCAAGATGTTGGTTCAAAGATTGAGCATCATTTGGTTCTTCCACGGGTTTCTTCTATGTCTAATCCTAATTTGGGTGAACTAGAAGAGATGTTGAAGCTTCCCAGCTTTCAATCTCGGGTGTTCATTGTGCTTCAGTCATCTTTACCGACGGTGACCAATCTGTTCAGTGTGGCAAAGAAGATGGGACTTACCTACTACGCCAATAATACAAGTTCCTATGTCAACTTCAGTAAGGCATTCCAAGTAAAGTATCCAGAAGAAGATAACTCCAAGCCAGGAATTTATGCTCTTCGAGCATATCATGCGACTAGAATCGTAACACAGGCCATAAGAATGACTAGTAACAGTAATACTAACCTTCAGGTAGTGTTAAATACAGTGTTGAGCAATTTCATGGGTTTAAGTGGGAAAATGTTTATTGAAGGAGGTGAAGACTTGTACTCTCCCATATTCAGGATCATAAATATTGTGGAAGGGAACAGGTACAAAGAATTGAACTTTTGGAGACCAGAGTTTGGGTTCACAGAAAGCCTTTCAAAAAAAACAAGCAAAAACAGAAGTGATAATGTTGGTAGAGTAGTTTGGCCCGGGAATCTAAGCCAACGATTCCCCAAAGGCTGGGCAATGCCTACTGTTGATAAGCCAATGAGAATTGGGGTTCCTAACGCTTCCTTCCCCGCATTTGTAAAGGTTGGTTCAGATGGGAAGAGTTATGAAGGTTTCTGCATTAAAATTTTCCAAATGGTGCGAAGTCGTTTGAATTATCTTCTGCCCTATGAATTACAATGCGTTAATGGCTCGTATGATGATCTGGTAGAACTAGTCCATAACAAGACTCTTGATGCTGCTATTGGTGATATCACCATACTAGCAGACCGATTGGACAAAGTAGAATTCACTCAGCCCTATATCGAGTCTGGTTTGGTAATAATAGCTCCAGAAAAAGCTGAGCAATTAGAATGGACGCTGATCAAACCCTTCAGCGGGAAAATGTGGGTGGCAACTGGTGGCATATTAGTTTACACAATCTTGATTATATGGTTTTTGGAGCGCGTAGCTAGTCCAGAATTCAGTGGCCCATTGACGAATCAGATTGGCAAAGCAGTTTGGTTCGCCTTCAACTCTTTGTTCTTTTCTCACAGTAAGTACCAATTCAAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

593

Amino Acids

66.53

Weight (kDa)

8.13

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	60 - 196	1.1e-09	Periplasmic binding protein
ANF_receptor	PF01094	65 - 270	2.6e-27	Receptor family ligand binding region
SBP_bac_3	PF00497	429 - 524	3.4e-11	Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd	PF10613	441 - 519	2.6e-08	Ligated ion channel L-glutamate- and glycine-binding site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1133, 1236
AccII	CGCG	1 cut(s)	1671
AciI	CCGC	3 cut(s)	440, 1296, 1602
AclWI	GGATC	2 cut(s)	275, 1082
AcoI	YGGCCR	1 cut(s)	461
AcsI	RAATTY	4 cut(s)	897, 1350, 1511, 1685
AcuI	CTGAAG	4 cut(s)	734, 829, 962, 1582
AfaI	GTAC	4 cut(s)	16, 1058, 1103, 1766
AfiI	CCNNNNNNNGG	6 cut(s)	689, 1071, 1133, 1236, 1601, 1602
AhlI	ACTAGT	2 cut(s)	956, 1438
AjnI	CCWGG	1 cut(s)	892
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	2 cut(s)	347, 1117
AlwI	GGATC	2 cut(s)	275, 1082
AlwNI	CAGNNNCTG	1 cut(s)	299
Ama87I	CYCGRG	2 cut(s)	732, 1205
AoxI	GGCC	4 cut(s)	461, 942, 1202, 1693
ApeKI	GCWGC	7 cut(s)	212, 293, 302, 368, 422, 494, 1463
ApoI	RAATTY	4 cut(s)	897, 1350, 1511, 1685
AspLEI	GCGC	1 cut(s)	1671
AspS9I	GGNCC	2 cut(s)	1203, 1694
AsuC2I	CCSGG	2 cut(s)	1206, 1207
AsuHPI	GGTGA	7 cut(s)	421, 593, 704, 781, 1058, 1471, 1484
AsuNHI	GCTAGC	1 cut(s)	595
AvaI	CYCGRG	2 cut(s)	732, 1205
BalI	TGGCCA	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	1056
Bbv12I	GWGCWC	1 cut(s)	400
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	7 cut(s)	224, 289, 305, 380, 434, 481, 1450
BccI	CCATC	6 cut(s)	101, 164, 482, 563, 793, 1313
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	1 cut(s)	894
BciVI	GTATCC	1 cut(s)	879
BclI	TGATCA	2 cut(s)	66, 1587
BcnI	CCSGG	2 cut(s)	1206, 1207
BcoDI	GTCTC	2 cut(s)	347, 1117
BcuI	ACTAGT	2 cut(s)	956, 1438
BfmI	CTRYAG	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	879
BisI	GCNGC	7 cut(s)	213, 294, 303, 369, 423, 495, 1464
BlpI	GCTNAGC	1 cut(s)	1566
BlsI	GCNGC	7 cut(s)	214, 295, 304, 370, 424, 496, 1465
Bme1390I	CCNGG	3 cut(s)	894, 1206, 1207
BmeT110I	CYCGRG	2 cut(s)	732, 1205
BmgT120I	GGNCC	2 cut(s)	1203, 1694
BmiI	GGNNCC	3 cut(s)	154, 392, 1278
BmrFI	CCNGG	3 cut(s)	894, 1206, 1207
BmsI	GCATC	5 cut(s)	58, 574, 582, 652, 1450
BmtI	GCTAGC	1 cut(s)	599
BpiI	GAAGAC	1 cut(s)	1056
BpmI	CTGGAG	1 cut(s)	1539
Bpu10I	CCTNAGC	1 cut(s)	120
Bpu1102I	GCTNAGC	1 cut(s)	1566
BpuEI	CTTGAG	2 cut(s)	291, 384
BpuMI	CCSGG	2 cut(s)	1206, 1207
BsaBI	GATNNNNATC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	1117
BsaJI	CCNNGG	3 cut(s)	201, 659, 1205
BsaWI	WCCGGW	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	6 cut(s)	689, 1071, 1133, 1236, 1601, 1602
Bse118I	RCCGGY	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	1627
Bse3DI	GCAATG	2 cut(s)	510, 1248
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	894
BseDI	CCNNGG	3 cut(s)	201, 659, 1205
BseGI	GGATG	3 cut(s)	156, 571, 597
BseJI	GATNNNNATC	1 cut(s)	71
BseLI	CCNNNNNNNGG	6 cut(s)	689, 1071, 1133, 1236, 1601, 1602
BseMI	GCAATG	2 cut(s)	510, 1248
BseMII	CTCAG	4 cut(s)	111, 512, 1532, 1557
BseNI	ACTGG	1 cut(s)	1627
BseXI	GCAGC	7 cut(s)	224, 289, 305, 380, 434, 481, 1450
BseYI	CCCAGC	3 cut(s)	587, 719, 1236
Bsh1236I	CGCG	1 cut(s)	1671
BshFI	GGCC	4 cut(s)	463, 944, 1204, 1695
BsiHKAI	GWGCWC	1 cut(s)	400
BsiHKCI	CYCGRG	2 cut(s)	732, 1205
BsiSI	CCGG	3 cut(s)	407, 428, 1206
BslFI	GGGAC	1 cut(s)	816
BslI	CCNNNNNNNGG	6 cut(s)	689, 1071, 1133, 1236, 1601, 1602
BsmAI	GTCTC	2 cut(s)	347, 1117
BsmFI	GGGAC	1 cut(s)	816
BsmI	GAATGC	1 cut(s)	854
BsnI	GGCC	4 cut(s)	463, 944, 1204, 1695
Bso31I	GGTCTC	1 cut(s)	1117
BsoBI	CYCGRG	2 cut(s)	732, 1205
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	5 cut(s)	66, 280, 1074, 1426, 1587
Bsp1720I	GCTNAGC	1 cut(s)	1566
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	3 cut(s)	440, 1296, 1602
BspANI	GGCC	4 cut(s)	463, 944, 1204, 1695
BspCNI	CTCAG	4 cut(s)	112, 511, 1531, 1558
BspFNI	CGCG	1 cut(s)	1671
BspLI	GGNNCC	3 cut(s)	154, 392, 1278
BspMAI	CTGCAG	1 cut(s)	295
BspOI	GCTAGC	1 cut(s)	599
BspPI	GGATC	2 cut(s)	275, 1082
BspQI	GCTCTTC	1 cut(s)	912
BspTNI	GGTCTC	1 cut(s)	1117
BsrDI	GCAATG	2 cut(s)	510, 1248
BsrFI	RCCGGY	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	1627
BssAI	RCCGGY	1 cut(s)	427
BssECI	CCNNGG	3 cut(s)	201, 659, 1205
BssMI	GATC	5 cut(s)	66, 280, 1074, 1426, 1587
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	894
Bst4CI	ACNGT	6 cut(s)	139, 769, 965, 997, 1252, 1760
Bst6I	CTCTTC	3 cut(s)	696, 912, 1319
BstAPI	GCANNNNNTGC	2 cut(s)	299, 920
BstC8I	GCNNGC	2 cut(s)	484, 597
BstDEI	CTNAG	5 cut(s)	120, 498, 1214, 1518, 1566
BstDSI	CCRYGG	2 cut(s)	201, 659
BstEII	GGTNACC	1 cut(s)	769
BstF5I	GGATG	3 cut(s)	156, 571, 597
BstFNI	CGCG	1 cut(s)	1671
BstHHI	GCGC	1 cut(s)	1671
BstKTI	GATC	5 cut(s)	69, 283, 1077, 1429, 1590
BstMAI	GTCTC	2 cut(s)	347, 1117
BstMBI	GATC	5 cut(s)	66, 280, 1074, 1426, 1587
BstMWI	GCNNNNNNNGC	9 cut(s)	61, 299, 302, 377, 428, 448, 911, 920, 1413
BstNI	CCWGG	1 cut(s)	894
BstPI	GGTNACC	1 cut(s)	769
BstSCI	CCNGG	3 cut(s)	892, 1204, 1205
BstSFI	CTRYAG	1 cut(s)	291
BstUI	CGCG	1 cut(s)	1671
BstV1I	GCAGC	7 cut(s)	224, 289, 305, 380, 434, 481, 1450
BstV2I	GAAGAC	1 cut(s)	1056
BstX2I	RGATCY	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	626
BstYI	RGATCY	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	879
BsuRI	GGCC	4 cut(s)	463, 944, 1204, 1695
BtgI	CCRYGG	2 cut(s)	201, 659
BtgZI	GCGATG	1 cut(s)	501
BtsCI	GGATG	3 cut(s)	156, 571, 597
BtsIMutI	CAGTG	3 cut(s)	790, 1002, 1696
Cac8I	GCNNGC	2 cut(s)	484, 597
CaiI	CAGNNNCTG	1 cut(s)	299
CfoI	GCGC	1 cut(s)	1671
Cfr10I	RCCGGY	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	1203, 1694
Cfr9I	CCCGGG	1 cut(s)	1205
CseI	GACGC	1 cut(s)	1591
Csp6I	GTAC	4 cut(s)	15, 1057, 1102, 1765
CviAII	CATG	4 cut(s)	202, 349, 920, 1012
CviQI	GTAC	4 cut(s)	15, 1057, 1102, 1765
DdeI	CTNAG	5 cut(s)	120, 498, 1214, 1518, 1566
DpnI	GATC	5 cut(s)	68, 282, 1076, 1428, 1589
DpnII	GATC	5 cut(s)	66, 280, 1074, 1426, 1587
EaeI	YGGCCR	1 cut(s)	461
Eam1104I	CTCTTC	3 cut(s)	696, 912, 1319
EarI	CTCTTC	3 cut(s)	696, 912, 1319
Ecl136II	GAGCTC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	400
Eco31I	GGTCTC	1 cut(s)	1117
Eco32I	GATATC	1 cut(s)	1477
Eco53kI	GAGCTC	1 cut(s)	398
Eco57I	CTGAAG	4 cut(s)	734, 829, 962, 1582
Eco88I	CYCGRG	2 cut(s)	732, 1205
Eco91I	GGTNACC	1 cut(s)	769
EcoICRI	GAGCTC	1 cut(s)	398
EcoO65I	GGTNACC	1 cut(s)	769
EcoRI	GAATTC	2 cut(s)	1511, 1685
EcoRII	CCWGG	1 cut(s)	892
EcoRV	GATATC	1 cut(s)	1477
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	4 cut(s)	205, 352, 923, 1015
FaqI	GGGAC	1 cut(s)	816
FatI	CATG	4 cut(s)	201, 348, 919, 1011
FauI	CCCGC	3 cut(s)	447, 1303, 1595
FbaI	TGATCA	2 cut(s)	66, 1587
Fnu4HI	GCNGC	7 cut(s)	213, 294, 303, 369, 423, 495, 1464
FokI	GGATG	3 cut(s)	143, 578, 604
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	7 cut(s)	213, 294, 303, 369, 423, 495, 1464
GlaI	GCGC	1 cut(s)	1670
GluI	GCNGC	7 cut(s)	213, 294, 303, 369, 423, 495, 1464
GsaI	CCCAGC	3 cut(s)	591, 723, 1240
GsuI	CTGGAG	1 cut(s)	1539
HaeIII	GGCC	4 cut(s)	463, 944, 1204, 1695
HapII	CCGG	3 cut(s)	407, 428, 1206
HgaI	GACGC	1 cut(s)	1591
HhaI	GCGC	1 cut(s)	1671
Hin1II	CATG	4 cut(s)	205, 352, 923, 1015
Hin6I	GCGC	1 cut(s)	1669
HinP1I	GCGC	1 cut(s)	1669
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	7 cut(s)	241, 930, 1210, 1224, 1453, 1532, 1705
HpaII	CCGG	3 cut(s)	407, 428, 1206
HphI	GGTGA	7 cut(s)	421, 593, 704, 781, 1058, 1471, 1484
Hpy166II	GTNNAC	4 cut(s)	695, 841, 1140, 1639
Hpy188I	TCNGA	6 cut(s)	106, 168, 274, 501, 1318, 1710
Hpy188III	TCNNGA	8 cut(s)	185, 308, 872, 1072, 1457, 1556, 1648, 1682
Hpy8I	GTNNAC	4 cut(s)	695, 841, 1140, 1639
Hpy99I	CGWCG	1 cut(s)	769
HpyAV	CCTTC	8 cut(s)	266, 986, 1034, 1085, 1300, 1328, 1606, 1744
HpyCH4III	ACNGT	6 cut(s)	139, 769, 965, 997, 1252, 1760
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	9 cut(s)	212, 293, 422, 451, 510, 515, 530, 554, 1344
HpyF10VI	GCNNNNNNNGC	9 cut(s)	61, 299, 302, 377, 428, 448, 911, 920, 1413
HpyF3I	CTNAG	5 cut(s)	120, 498, 1214, 1518, 1566
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	4 cut(s)	205, 352, 923, 1015
HspAI	GCGC	1 cut(s)	1669
Ksp22I	TGATCA	2 cut(s)	66, 1587
Kzo9I	GATC	5 cut(s)	66, 280, 1074, 1426, 1587
LguI	GCTCTTC	1 cut(s)	912
LmnI	GCTCC	3 cut(s)	152, 1558, 1666
Lsp1109I	GCAGC	7 cut(s)	224, 289, 305, 380, 434, 481, 1450
LweI	GCATC	5 cut(s)	58, 574, 582, 652, 1450
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	4 cut(s)	139, 769, 934, 959
MalI	GATC	5 cut(s)	68, 282, 1076, 1428, 1589
MboI	GATC	5 cut(s)	66, 280, 1074, 1426, 1587
MfeI	CAATTG	1 cut(s)	535
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	400
MlsI	TGGCCA	1 cut(s)	463
MluNI	TGGCCA	1 cut(s)	463
MlyI	GAGTC	3 cut(s)	235, 1447, 1541
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	6 cut(s)	69, 115, 453, 556, 604, 1037
Mox20I	TGGCCA	1 cut(s)	463
Mph1103I	ATGCAT	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	463
MseI	TTAA	6 cut(s)	162, 318, 989, 1019, 1347, 1410
MslI	CAYNNNNRTG	1 cut(s)	950
Msp20I	TGGCCA	1 cut(s)	463
MspA1I	CMGCKG	2 cut(s)	215, 1602
MspI	CCGG	3 cut(s)	407, 428, 1206
MspR9I	CCNGG	3 cut(s)	894, 1206, 1207
MunI	CAATTG	1 cut(s)	535
Mva1269I	GAATGC	1 cut(s)	854
MvaI	CCWGG	1 cut(s)	894
MvnI	CGCG	1 cut(s)	1671
MwoI	GCNNNNNNNGC	9 cut(s)	61, 299, 302, 377, 428, 448, 911, 920, 1413
NciI	CCSGG	2 cut(s)	1206, 1207
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	5 cut(s)	66, 280, 1074, 1426, 1587
NheI	GCTAGC	1 cut(s)	595
NlaIII	CATG	4 cut(s)	205, 352, 923, 1015
NlaIV	GGNNCC	3 cut(s)	154, 392, 1278
NmuCI	GTSAC	2 cut(s)	139, 769
NsiI	ATGCAT	1 cut(s)	512
PciSI	GCTCTTC	1 cut(s)	912
PctI	GAATGC	1 cut(s)	854
PfeI	GAWTC	4 cut(s)	930, 1210, 1224, 1705
PflFI	GACNNNGTC	1 cut(s)	32
PflMI	CCANNNNNTGG	2 cut(s)	1133, 1236
PkrI	GCNGC	7 cut(s)	214, 295, 304, 370, 424, 496, 1465
PleI	GAGTC	3 cut(s)	235, 1447, 1540
PpsI	GAGTC	3 cut(s)	235, 1447, 1540
Psp124BI	GAGCTC	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	892
PspEI	GGTNACC	1 cut(s)	769
PspFI	CCCAGC	3 cut(s)	587, 719, 1236
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	3 cut(s)	154, 392, 1278
PspPI	GGNCC	2 cut(s)	1203, 1694
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	4 cut(s)	16, 1058, 1103, 1766
RsaNI	GTAC	4 cut(s)	15, 1057, 1102, 1765
RseI	CAYNNNNRTG	1 cut(s)	950
SacI	GAGCTC	1 cut(s)	400
SapI	GCTCTTC	1 cut(s)	912
SaqAI	TTAA	6 cut(s)	162, 318, 989, 1019, 1347, 1410
SatI	GCNGC	7 cut(s)	213, 294, 303, 369, 423, 495, 1464
Sau3AI	GATC	5 cut(s)	66, 280, 1074, 1426, 1587
Sau96I	GGNCC	2 cut(s)	1203, 1694
SchI	GAGTC	3 cut(s)	235, 1447, 1541
ScrFI	CCNGG	3 cut(s)	894, 1206, 1207
SduI	GDGCHC	1 cut(s)	400
SfaNI	GCATC	5 cut(s)	58, 574, 582, 652, 1450
SfcI	CTRYAG	1 cut(s)	291
SmaI	CCCGGG	1 cut(s)	1207
SmiMI	CAYNNNNRTG	1 cut(s)	950
SmlI	CTYRAG	2 cut(s)	306, 399
SmoI	CTYRAG	2 cut(s)	306, 399
SpeI	ACTAGT	2 cut(s)	956, 1438
SsiI	CCGC	3 cut(s)	440, 1296, 1602
SspI	AATATT	1 cut(s)	1084
SstI	GAGCTC	1 cut(s)	400
StyD4I	CCNGG	3 cut(s)	892, 1204, 1205
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	6 cut(s)	139, 769, 965, 997, 1252, 1760
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	3 cut(s)	265, 910, 1530
TaqII	GACCGA	1 cut(s)	1509
TatI	WGTACW	1 cut(s)	1056
TfiI	GAWTC	4 cut(s)	930, 1210, 1224, 1705
Tru1I	TTAA	6 cut(s)	162, 318, 989, 1019, 1347, 1410
Tru9I	TTAA	6 cut(s)	162, 318, 989, 1019, 1347, 1410
TscAI	CASTG	3 cut(s)	790, 1002, 1696
TseFI	GTSAC	2 cut(s)	139, 769
TseI	GCWGC	7 cut(s)	212, 293, 302, 368, 422, 494, 1463
Tsp45I	GTSAC	2 cut(s)	139, 769
TspDTI	ATGAA	8 cut(s)	248, 378, 405, 518, 730, 1000, 1347, 1410
TspMI	CCCGGG	1 cut(s)	1205
TspRI	CASTG	3 cut(s)	790, 1002, 1696
Tth111I	GACNNNGTC	1 cut(s)	32
Van91I	CCANNNNNTGG	2 cut(s)	1133, 1236
XapI	RAATTY	4 cut(s)	897, 1350, 1511, 1685
XmaI	CCCGGG	1 cut(s)	1205
Zsp2I	ATGCAT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.