Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003071.1

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Reverse (-)

875 .. 2171

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003071.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgtgggcggcgagtggtggcatattagtctacacaatcttgattatatggtttctggagcgcccgtctaatccagagttcagtggtccattgaagaatcagattggcaccgcaacttggtttgccttcacctctttgttcttttctcacagagagaaaatccataacaacttaactcgagtagttgttgtaatgtggctgtttgttgtattaatcctaacctcaagctacaccgctaatttgtcgtcaatgctcaccatccaacgattgaaaccaaatgtaacagacatcgaaatactaaagagaaccaactcaaaggttggcttggatggggattcatttgtcataacttacatggagagggtacttcaattcaattcacagaacatcatcacaataagcagtgaattcaactacacagaggcatttaaaaacggaagtatatctgctgcctttcttgaactcccatatgctaaagtattcatgaaccactactgcaagggatatactgcgaccacacccacctttagatttggaggactaggctttatatttcagaaaggctctccaattgcccgggatttcaccaaggccattctagagttattggaggatggagaactgaagtcacttgaagatacttggttgacaccaaatcgtgactgtccaaataatgcaagttctgatgttccagatagcttgagcgtcaagaattttatgggcctttatgtaatatccagcgctacttctaccatttgccttctattatccttcactatcttgctgaagaagtttcaacaacacgaggatgcatacctaggcaatgcaagtgatgaaagtgtttggaacaagacagttagaatagcaagattcctatataataaagagttcaatgttccaagcagagctccaagtattgttgatgtgccagaattgacttcttcccaaggggagcatgtgatcacttccacccctcaggagcatcaacttcaggcctccacccccgcacaaactgaaagcggtccactacattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

344

Amino Acids

38.58

Weight (kDa)

6.18

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	30
AciI	CCGC	5 cut(s)	8, 111, 234, 1005, 1020
AcsI	RAATTY	2 cut(s)	407, 712
AcuI	CTGAAG	3 cut(s)	644, 806, 974
AfaI	GTAC	1 cut(s)	366
AfeI	AGCGCT	1 cut(s)	742
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	9 cut(s)	94, 271, 371, 376, 412, 461, 635, 797, 892
AluBI	AGCT	3 cut(s)	228, 699, 908
AluI	AGCT	3 cut(s)	228, 699, 908
Alw21I	GWGCWC	1 cut(s)	910
Ama87I	CYCGRG	2 cut(s)	177, 576
Aor51HI	AGCGCT	1 cut(s)	742
AoxI	GGCC	3 cut(s)	591, 721, 993
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	2 cut(s)	407, 712
AseI	ATTAAT	1 cut(s)	212
AspA2I	CCTAGG	1 cut(s)	817
AspLEI	GCGC	2 cut(s)	63, 743
AspS9I	GGNCC	3 cut(s)	86, 721, 1022
AsuC2I	CCSGG	2 cut(s)	577, 578
AsuHPI	GGTGA	3 cut(s)	121, 247, 577
AvaI	CYCGRG	2 cut(s)	177, 576
AvaII	GGWCC	2 cut(s)	86, 1022
AvrII	CCTAGG	1 cut(s)	817
AxyI	CCTNAGG	1 cut(s)	975
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	910
BauI	CACGAG	1 cut(s)	803
Bbv12I	GWGCWC	1 cut(s)	910
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	3 cut(s)	266, 323, 608
BclI	TGATCA	1 cut(s)	960
BcnI	CCSGG	2 cut(s)	577, 578
BfaI	CTAG	3 cut(s)	542, 599, 818
BfoI	RGCGCY	2 cut(s)	64, 744
BisI	GCNGC	2 cut(s)	9, 450
BlnI	CCTAGG	1 cut(s)	817
BlsI	GCNGC	2 cut(s)	10, 451
Bme1390I	CCNGG	2 cut(s)	577, 578
Bme18I	GGWCC	2 cut(s)	86, 1022
BmeT110I	CYCGRG	2 cut(s)	177, 576
BmgT120I	GGNCC	3 cut(s)	86, 721, 1022
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	2 cut(s)	577, 578
BmsI	GCATC	2 cut(s)	799, 991
BpmI	CTGGAG	1 cut(s)	77
BpuEI	CTTGAG	2 cut(s)	208, 721
BpuMI	CCSGG	2 cut(s)	577, 578
BsaJI	CCNNGG	4 cut(s)	576, 588, 817, 946
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse21I	CCTNAGG	1 cut(s)	975
Bse3DI	GCAATG	1 cut(s)	829
BseDI	CCNNGG	4 cut(s)	576, 588, 817, 946
BseGI	GGATG	4 cut(s)	258, 334, 619, 814
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	1 cut(s)	989
BseXI	GCAGC	1 cut(s)	436
BshFI	GGCC	3 cut(s)	593, 723, 995
BshNI	GGYRCC	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	910
BsiHKCI	CYCGRG	2 cut(s)	177, 576
BsiSI	CCGG	1 cut(s)	577
BslI	CCNNNNNNNGG	1 cut(s)	117
BsnI	GGCC	3 cut(s)	593, 723, 995
BsoBI	CYCGRG	2 cut(s)	177, 576
Bsp1286I	GDGCHC	1 cut(s)	910
Bsp143I	GATC	1 cut(s)	960
BspACI	CCGC	5 cut(s)	8, 111, 234, 1005, 1020
BspANI	GGCC	3 cut(s)	593, 723, 995
BspCNI	CTCAG	1 cut(s)	988
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	829
BssECI	CCNNGG	4 cut(s)	576, 588, 817, 946
BssMI	GATC	1 cut(s)	960
BssSI	CACGAG	1 cut(s)	803
BssT1I	CCWWGG	3 cut(s)	588, 817, 946
Bst2BI	CACGAG	1 cut(s)	803
Bst4CI	ACNGT	2 cut(s)	665, 856
BstDEI	CTNAG	1 cut(s)	975
BstF5I	GGATG	4 cut(s)	258, 334, 619, 814
BstH2I	RGCGCY	2 cut(s)	64, 744
BstHHI	GCGC	2 cut(s)	63, 743
BstKTI	GATC	1 cut(s)	963
BstMBI	GATC	1 cut(s)	960
BstNSI	RCATGY	1 cut(s)	959
BstSCI	CCNGG	2 cut(s)	575, 576
BstV1I	GCAGC	1 cut(s)	436
Bsu36I	CCTNAGG	1 cut(s)	975
BsuRI	GGCC	3 cut(s)	593, 723, 995
BtsCI	GGATG	4 cut(s)	258, 334, 619, 814
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	88, 409
CciI	TCATGA	1 cut(s)	483
CfoI	GCGC	2 cut(s)	63, 743
Cfr13I	GGNCC	3 cut(s)	86, 721, 1022
Cfr9I	CCCGGG	1 cut(s)	576
CseI	GACGC	1 cut(s)	694
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	3 cut(s)	355, 484, 956
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	1 cut(s)	975
DpnI	GATC	1 cut(s)	962
DpnII	GATC	1 cut(s)	960
DraI	TTTAAA	1 cut(s)	430
Ecl136II	GAGCTC	1 cut(s)	908
Eco130I	CCWWGG	3 cut(s)	588, 817, 946
Eco147I	AGGCCT	1 cut(s)	995
Eco24I	GRGCYC	1 cut(s)	910
Eco47I	GGWCC	2 cut(s)	86, 1022
Eco47III	AGCGCT	1 cut(s)	742
Eco53kI	GAGCTC	1 cut(s)	908
Eco57I	CTGAAG	3 cut(s)	644, 806, 974
Eco81I	CCTNAGG	1 cut(s)	975
Eco88I	CYCGRG	2 cut(s)	177, 576
EcoICRI	GAGCTC	1 cut(s)	908
EcoRI	GAATTC	1 cut(s)	407
EcoT14I	CCWWGG	3 cut(s)	588, 817, 946
EcoT22I	ATGCAT	1 cut(s)	814
EcoT38I	GRGCYC	1 cut(s)	910
ErhI	CCWWGG	3 cut(s)	588, 817, 946
FaeI	CATG	3 cut(s)	358, 487, 959
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FatI	CATG	3 cut(s)	354, 483, 955
FauI	CCCGC	1 cut(s)	1012
FauNDI	CATATG	1 cut(s)	469
FbaI	TGATCA	1 cut(s)	960
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	9, 450
FokI	GGATG	4 cut(s)	245, 341, 626, 821
FriOI	GRGCYC	1 cut(s)	910
Fsp4HI	GCNGC	2 cut(s)	9, 450
FspBI	CTAG	3 cut(s)	542, 599, 818
GlaI	GCGC	2 cut(s)	62, 742
GluI	GCNGC	2 cut(s)	9, 450
GsuI	CTGGAG	1 cut(s)	77
HaeII	RGCGCY	2 cut(s)	64, 744
HaeIII	GGCC	3 cut(s)	593, 723, 995
HapII	CCGG	1 cut(s)	577
HgaI	GACGC	1 cut(s)	694
HhaI	GCGC	2 cut(s)	63, 743
Hin1II	CATG	3 cut(s)	358, 487, 959
Hin6I	GCGC	2 cut(s)	61, 741
HinP1I	GCGC	2 cut(s)	61, 741
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HinfI	GANTC	3 cut(s)	97, 335, 870
HpaII	CCGG	1 cut(s)	577
HphI	GGTGA	3 cut(s)	121, 247, 577
Hpy166II	GTNNAC	3 cut(s)	31, 648, 1025
Hpy188I	TCNGA	3 cut(s)	102, 558, 685
Hpy8I	GTNNAC	3 cut(s)	31, 648, 1025
HpyAV	CCTTC	3 cut(s)	136, 770, 781
HpyCH4III	ACNGT	2 cut(s)	665, 856
HpyCH4V	TGCA	4 cut(s)	498, 677, 812, 827
HpyF3I	CTNAG	1 cut(s)	975
Hsp92II	CATG	3 cut(s)	358, 487, 959
HspAI	GCGC	2 cut(s)	61, 741
Ksp22I	TGATCA	1 cut(s)	960
Kzo9I	GATC	1 cut(s)	960
LmnI	GCTCC	4 cut(s)	58, 913, 952, 979
LpnPI	CCDG	8 cut(s)	41, 87, 590, 705, 751, 942, 962, 977
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	2 cut(s)	799, 991
MaeI	CTAG	3 cut(s)	542, 599, 818
MaeIII	GTNAC	3 cut(s)	280, 627, 659
MalI	GATC	1 cut(s)	962
MboI	GATC	1 cut(s)	960
MboII	GAAGA	4 cut(s)	106, 647, 799, 933
MfeI	CAATTG	1 cut(s)	570
MhlI	GDGCHC	1 cut(s)	910
MluCI	AATT	7 cut(s)	238, 371, 376, 407, 570, 712, 932
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	9 cut(s)	142, 232, 354, 415, 530, 604, 799, 984, 1006
Mph1103I	ATGCAT	1 cut(s)	814
MseI	TTAA	4 cut(s)	173, 212, 429, 1033
MslI	CAYNNNNRTG	1 cut(s)	807
MspI	CCGG	1 cut(s)	577
MspR9I	CCNGG	2 cut(s)	577, 578
MunI	CAATTG	1 cut(s)	570
NciI	CCSGG	2 cut(s)	577, 578
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	1 cut(s)	960
NlaIII	CATG	3 cut(s)	358, 487, 959
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	627, 659
NsiI	ATGCAT	1 cut(s)	814
NspI	RCATGY	1 cut(s)	959
PaeR7I	CTCGAG	1 cut(s)	177
PagI	TCATGA	1 cut(s)	483
PceI	AGGCCT	1 cut(s)	995
PfeI	GAWTC	3 cut(s)	97, 335, 870
PkrI	GCNGC	2 cut(s)	10, 451
PshBI	ATTAAT	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	910
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	3 cut(s)	86, 721, 1022
PspXI	VCTCGAGB	1 cut(s)	177
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	807
SacI	GAGCTC	1 cut(s)	910
SaqAI	TTAA	4 cut(s)	173, 212, 429, 1033
SatI	GCNGC	2 cut(s)	9, 450
Sau3AI	GATC	1 cut(s)	960
Sau96I	GGNCC	3 cut(s)	86, 721, 1022
ScrFI	CCNGG	2 cut(s)	577, 578
SduI	GDGCHC	1 cut(s)	910
SetI	ASST	8 cut(s)	134, 224, 230, 321, 527, 701, 819, 910
SfaNI	GCATC	2 cut(s)	799, 991
Sfr274I	CTCGAG	1 cut(s)	177
SinI	GGWCC	2 cut(s)	86, 1022
SlaI	CTCGAG	1 cut(s)	177
SmaI	CCCGGG	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	807
SmlI	CTYRAG	3 cut(s)	177, 223, 700
SmoI	CTYRAG	3 cut(s)	177, 223, 700
Sse9I	AATT	7 cut(s)	238, 371, 376, 407, 570, 712, 932
SseBI	AGGCCT	1 cut(s)	995
SsiI	CCGC	5 cut(s)	8, 111, 234, 1005, 1020
SspMI	CTAG	3 cut(s)	542, 599, 818
SstI	GAGCTC	1 cut(s)	910
StuI	AGGCCT	1 cut(s)	995
StyD4I	CCNGG	2 cut(s)	575, 576
StyI	CCWWGG	3 cut(s)	588, 817, 946
TaaI	ACNGT	2 cut(s)	665, 856
TaqI	TCGA	2 cut(s)	178, 291
TasI	AATT	7 cut(s)	238, 371, 376, 407, 570, 712, 932
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	97, 335, 870
Tru1I	TTAA	4 cut(s)	173, 212, 429, 1033
Tru9I	TTAA	4 cut(s)	173, 212, 429, 1033
TscAI	CASTG	2 cut(s)	88, 409
TseFI	GTSAC	2 cut(s)	627, 659
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	2 cut(s)	627, 659
TspDTI	ATGAA	4 cut(s)	327, 472, 500, 849
TspGWI	ACGGA	1 cut(s)	450
TspMI	CCCGGG	1 cut(s)	576
TspRI	CASTG	2 cut(s)	88, 409
VpaK11BI	GGWCC	2 cut(s)	86, 1022
VspI	ATTAAT	1 cut(s)	212
XapI	RAATTY	2 cut(s)	407, 712
XbaI	TCTAGA	1 cut(s)	598
XceI	RCATGY	1 cut(s)	959
XhoI	CTCGAG	1 cut(s)	177
XmaI	CCCGGG	1 cut(s)	576
XmaJI	CCTAGG	1 cut(s)	817
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	3 cut(s)	542, 599, 818
Zsp2I	ATGCAT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.