Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Reverse (-)

7708929 .. 7728077

Gene Structure 19149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031716

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2448 bp

ATGGCTTTTCCTTGTAAGTTGACCTTTAACAAAATCGAAAGACTTTGGTATCTGCTTCTGCTTCCTCTGCTCATCATAATCATCATTATCACTGTCTCTGATGGAGCTGAAGCTGAAAATGAGAAAATTGTCACCAATCTTGGAGCAATCGTTAATCTGAACTCTCGTATGGGTAAAGAACAGAAAACTGCTATGGATATTGCAGGTGAAAACTTCAGCAACCTTTCAAAGATTCATAGCCTAATCATTCATTTTCGACATTCTGACAGAGATCCCTTTACAGCTGCTTCTGCTGCTGAGGAGTTGATAAAAGACAAGAAGGTAAAACTGATAATTGGCATGGAGACTTGGCAGGAAGCAGCTCTAGTAGCTGATGTGGGGAACCGATCTCAAGTTCCGGTAATATCATTTGCAGCACCTACTATATCGCCACCTCTAATGCAACACGAATGGCCATTTTTGATTCGAGTGGCAAGCGATGGTGCTGCTCAAATGAAATGCATCGCAGATATTGTTTCTTTGTACACTTGGAAAAGGGTTATTGTTATATACGAGGATGACGGTTATGGTGGTGATACTGGGATGCTAGCTGTTTTATCTGAGGCTCTCCAAGACGTTGGCTCAAAGATTGAGCATCATTTGGTTCTCCCACGGGTTTCTTCTCTGTCTAATCCTAGTTGGGGTGAACTAGAAGAGATGTTGAAGCTTCCCACCTTTCAATCTCGGGTGTTCATTGTTCTTCAGTCATCTTTGTCAGCAGTCACTAATCTATTCAGGGTGGCAAAGAAGATGGGACTTGTAGAAAGAGACTCGGCTTGGATTGTCACAGAGAGTATTACTAGTTTGCTGAATCCTCAAGCCAACCATGACATGGAAGGCACTCTGGGAATCAAGACATATGCCAATAATACTAGTTTTTATGCCAAGTTCGAAAAGATATTCCAAACAAGATTTCCAGAAGAAGATAACTCCAAGCCTGGAATTTATGCACTTCGAGCATACGATCTTATTAGAATCGTAGCACAGGCCATAAGGAATACTACTAACAGTACTACTAACCTTCAGGTGTTGTTAAATACAGTACTGAACAACTATATGGGTTTAAGCGGCAAAATGCACTTCAAAGGAGGTGAAGTGTTGTACTCTCCAATATTCAGGATCATAAACATTGTGGAAGGGAACAGACACAAAGAGTTGAACTTTTGGAGACCAGAGGTTGGGTTCTCAGAAAGCCTTGCAAAAGAAACGAGCAGAAAAAGAAGTGATGATATTGGTACAGTAATTTGGCCCGGCAACCTAGGTGAACGAGCCCCCAAAGGCTGGGCAATGCCTACTGCTGGGAATCCAATGAAAATTTTGGTTCCAGGTAGAACTTCCTTCAGCGCATTTGTAAAGGTTGATTTAAGGAAGACGACTCTGCAGTATGACGGTTTCTGCATTCAAGTTTTCCACAAGGTGCTAAGTCGCCTGGATTATCCTTTGCTCTATGAATTTCATGCCGTTGATGGTCCCTATGATGATCTGGTAGAACTGGTCTATAACAAGACAAAATTATACTTCAGAGAGAAAATCCAAAACAAATTAACTCGGGTAGTAGTTGTAATGTGGCTGTTTGTTGTATTAATCCTAACCTCAAGCTACACCGCTAATCTGTCGTCAATGCTCACCATCCAACGATTGAAACCAAATGTAACAGACATCAAAATGCTAAAGAGAACCAACTCAAAGGTTGGCTTGGATGGGGATTCATTTGTCTTAAATTACATGGAGAATGTACTTATATTCAAACCAGAGAACATCATCAAAATAGGCAGCGAATACAACTACTCAGAGGCATTCAAAAACAAAAGTATATATGCTGCCTTTCTTGAACTCCCATATGCAAAAGTATTCATGAACTACTACTGCAAGGGATATACTGCAACCACACCCACCTTTAGATTTGGAGGACTAGGCTTTATATTTCAGAAAGGCTCTCCAATTGCCTGGGATTTCACCAAGGCCATTCTAGAGTTATTGGAGGATGGCGAACTGAAGTCACTTGAAGATACTTGGTTGACACCGAATCATGACTGTCCAAACAATTCAACTTCCGATGATCCAGAAAGCTTGAGTGTCAAGAATTTTATTGGCCTTTATGTAATATCCGGTGCTACTTCCACCATTTGTCTTCTATTATCCTTCCCCATCTTGCTGAAGAAGTTTCAACAACTCAAGAATGCATACCTAGGCAATGCAATTGATGGAAGTGTTTGGAACAGGACAGTTAGAAGAGCAAGATTCCTATATAATAGAGAGTTCAATGTTCCAAGCCGAGCTCCACGTTTTGTTGATGTGCCGGAATTGACTTCTTCCCAAGGGGAGCTTGTGATCACTTCCACCCCTCAGAAGCATCAACTTCAGGCCTCCACCCCCGCACAAACTGAATACAGTCCACCACATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

816

Amino Acids

91.86

Weight (kDa)

8.52

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	63 - 390	3.2e-38	Receptor family ligand binding region
Peripla_BP_6	PF13458	90 - 355	7.3e-13	Periplasmic binding protein
Lig_chan	PF00060	521 - 718	4e-18	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AccB7I	CCANNNNNTGG	3 cut(s)	871, 1217, 1320
AciI	CCGC	3 cut(s)	1107, 1644, 2415
AclWI	GGATC	3 cut(s)	266, 1166, 2093
AcoI	YGGCCR	1 cut(s)	452
AcsI	RAATTY	4 cut(s)	981, 1353, 1490, 2122
AcuI	CTGAAG	9 cut(s)	129, 199, 725, 1046, 1363, 1543, 2054, 2216, 2384
AdeI	CACNNNGTG	1 cut(s)	1456
AfaI	GTAC	6 cut(s)	524, 1051, 1083, 1142, 1276, 1776
AfiI	CCNNNNNNNGG	5 cut(s)	680, 871, 1217, 1320, 1337
AhlI	ACTAGT	2 cut(s)	839, 911
AjnI	CCWGG	4 cut(s)	976, 1363, 1467, 1985
AjuI	GAANNNNNNNTTGG	2 cut(s)	936, 968
Alw21I	GWGCWC	1 cut(s)	2320
Alw26I	GTCTC	4 cut(s)	100, 338, 801, 1201
AlwI	GGATC	3 cut(s)	266, 1166, 2093
Ama87I	CYCGRG	2 cut(s)	723, 1587
AoxI	GGCC	6 cut(s)	452, 1026, 1286, 2001, 2131, 2403
ApeKI	GCWGC	7 cut(s)	284, 293, 359, 413, 485, 1812, 1859
ApoI	RAATTY	4 cut(s)	981, 1353, 1490, 2122
AseI	ATTAAT	1 cut(s)	1622
AspA2I	CCTAGG	2 cut(s)	1297, 2227
AspLEI	GCGC	1 cut(s)	1385
AspS9I	GGNCC	2 cut(s)	1287, 1508
AsuC2I	CCSGG	1 cut(s)	1290
AsuHPI	GGTGA	8 cut(s)	124, 218, 584, 695, 1142, 1313, 1657, 1987
AsuII	TTCGAA	1 cut(s)	930
AsuNHI	GCTAGC	1 cut(s)	586
AvaI	CYCGRG	2 cut(s)	723, 1587
AvaII	GGWCC	1 cut(s)	1508
AvrII	CCTAGG	2 cut(s)	1297, 2227
BaeI	ACNNNNGTAYC	2 cut(s)	32, 65
BalI	TGGCCA	1 cut(s)	454
BanII	GRGCYC	2 cut(s)	1312, 2320
BbsI	GAAGAC	2 cut(s)	1415, 2162
Bbv12I	GWGCWC	1 cut(s)	2320
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	7 cut(s)	271, 280, 371, 425, 472, 1824, 1846
BccI	CCATC	9 cut(s)	95, 473, 784, 1499, 1676, 1733, 2018, 2195, 2237
BceAI	ACGGC	1 cut(s)	1484
BcgI	CGANNNNNNTGC	2 cut(s)	467, 501
BciT130I	CCWGG	4 cut(s)	978, 1365, 1469, 1987
BclI	TGATCA	1 cut(s)	2370
BcnI	CCSGG	1 cut(s)	1290
BcoDI	GTCTC	4 cut(s)	100, 338, 801, 1201
BcuI	ACTAGT	2 cut(s)	839, 911
BfmI	CTRYAG	1 cut(s)	1418
BfuAI	ACCTGC	1 cut(s)	194
BisI	GCNGC	8 cut(s)	285, 294, 360, 414, 486, 1108, 1813, 1860
BlnI	CCTAGG	2 cut(s)	1297, 2227
BlsI	GCNGC	8 cut(s)	286, 295, 361, 415, 487, 1109, 1814, 1861
BmcAI	AGTACT	2 cut(s)	1051, 1083
Bme1390I	CCNGG	5 cut(s)	978, 1290, 1365, 1469, 1987
Bme18I	GGWCC	1 cut(s)	1508
BmeT110I	CYCGRG	2 cut(s)	723, 1587
BmgT120I	GGNCC	2 cut(s)	1287, 1508
BmiI	GGNNCC	3 cut(s)	383, 1362, 1510
BmrFI	CCNGG	5 cut(s)	978, 1290, 1365, 1469, 1987
BmrI	ACTGGG	1 cut(s)	588
BmsI	GCATC	4 cut(s)	510, 573, 643, 2401
BmtI	GCTAGC	1 cut(s)	590
BmuI	ACTGGG	1 cut(s)	588
BpiI	GAAGAC	2 cut(s)	1415, 2162
Bpu10I	CCTNAGC	1 cut(s)	297
Bpu14I	TTCGAA	1 cut(s)	930
BpuEI	CTTGAG	5 cut(s)	375, 840, 1618, 2131, 2198
BpuMI	CCSGG	1 cut(s)	1290
BsaI	GGTCTC	1 cut(s)	1201
BsaJI	CCNNGG	6 cut(s)	650, 1297, 1986, 1998, 2227, 2356
BsaWI	WCCGGW	2 cut(s)	397, 2147
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 1119, 1149
Bsc4I	CCNNNNNNNGG	5 cut(s)	680, 871, 1217, 1320, 1337
Bse1I	ACTGG	2 cut(s)	583, 1536
Bse3DI	GCAATG	2 cut(s)	1332, 2239
BseBI	CCWGG	4 cut(s)	978, 1365, 1469, 1987
BseDI	CCNNGG	6 cut(s)	650, 1297, 1986, 1998, 2227, 2356
BseGI	GGATG	5 cut(s)	562, 588, 1668, 1744, 2029
BseLI	CCNNNNNNNGG	5 cut(s)	680, 871, 1217, 1320, 1337
BseMI	GCAATG	2 cut(s)	1332, 2239
BseMII	CTCAG	5 cut(s)	288, 591, 1239, 1842, 2399
BseNI	ACTGG	2 cut(s)	583, 1536
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	7 cut(s)	271, 280, 371, 425, 472, 1824, 1846
BseYI	CCCAGC	2 cut(s)	1320, 1337
BshFI	GGCC	6 cut(s)	454, 1028, 1288, 2003, 2133, 2405
BsiHKAI	GWGCWC	1 cut(s)	2320
BsiHKCI	CYCGRG	2 cut(s)	723, 1587
BsiSI	CCGG	4 cut(s)	398, 1290, 2148, 2339
BslFI	GGGAC	2 cut(s)	807, 1494
BslI	CCNNNNNNNGG	5 cut(s)	680, 871, 1217, 1320, 1337
BsmAI	GTCTC	4 cut(s)	100, 338, 801, 1201
BsmFI	GGGAC	2 cut(s)	807, 1494
BsmI	GAATGC	3 cut(s)	1437, 1835, 2224
BsnI	GGCC	6 cut(s)	454, 1028, 1288, 2003, 2133, 2405
Bso31I	GGTCTC	1 cut(s)	1201
BsoBI	CYCGRG	2 cut(s)	723, 1587
Bsp119I	TTCGAA	1 cut(s)	930
Bsp1286I	GDGCHC	2 cut(s)	1312, 2320
Bsp1407I	TGTACA	1 cut(s)	522
Bsp143I	GATC	7 cut(s)	271, 386, 1003, 1158, 1519, 2098, 2370
BspACI	CCGC	3 cut(s)	1107, 1644, 2415
BspANI	GGCC	6 cut(s)	454, 1028, 1288, 2003, 2133, 2405
BspCNI	CTCAG	5 cut(s)	289, 592, 1238, 1841, 2398
BspHI	TCATGA	2 cut(s)	1893, 2068
BspLI	GGNNCC	3 cut(s)	383, 1362, 1510
BspMAI	CTGCAG	1 cut(s)	1422
BspMI	ACCTGC	1 cut(s)	194
BspOI	GCTAGC	1 cut(s)	590
BspPI	GGATC	3 cut(s)	266, 1166, 2093
BspQI	GCTCTTC	1 cut(s)	2266
BspT104I	TTCGAA	1 cut(s)	930
BspTNI	GGTCTC	1 cut(s)	1201
BsrDI	GCAATG	2 cut(s)	1332, 2239
BsrGI	TGTACA	1 cut(s)	522
BsrI	ACTGG	2 cut(s)	583, 1536
BssECI	CCNNGG	6 cut(s)	650, 1297, 1986, 1998, 2227, 2356
BssMI	GATC	7 cut(s)	271, 386, 1003, 1158, 1519, 2098, 2370
BssT1I	CCWWGG	4 cut(s)	1297, 1998, 2227, 2356
Bst2UI	CCWGG	4 cut(s)	978, 1365, 1469, 1987
Bst4CI	ACNGT	9 cut(s)	94, 563, 1049, 1081, 1279, 1430, 2075, 2266, 2432
Bst6I	CTCTTC	2 cut(s)	687, 2266
BstAUI	TGTACA	1 cut(s)	522
BstBI	TTCGAA	1 cut(s)	930
BstC8I	GCNNGC	2 cut(s)	475, 588
BstDEI	CTNAG	6 cut(s)	297, 600, 1225, 1460, 1828, 2385
BstDSI	CCRYGG	1 cut(s)	650
BstF5I	GGATG	5 cut(s)	562, 588, 1668, 1744, 2029
BstHHI	GCGC	1 cut(s)	1385
BstKTI	GATC	7 cut(s)	274, 389, 1006, 1161, 1522, 2101, 2373
BstMAI	GTCTC	4 cut(s)	100, 338, 801, 1201
BstMBI	GATC	7 cut(s)	271, 386, 1003, 1158, 1519, 2098, 2370
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 290, 293, 368, 995
BstNI	CCWGG	4 cut(s)	978, 1365, 1469, 1987
BstSCI	CCNGG	5 cut(s)	976, 1288, 1363, 1467, 1985
BstSFI	CTRYAG	1 cut(s)	1418
BstV1I	GCAGC	7 cut(s)	271, 280, 371, 425, 472, 1824, 1846
BstV2I	GAAGAC	2 cut(s)	1415, 2162
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	2 cut(s)	617, 1986
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	6 cut(s)	454, 1028, 1288, 2003, 2133, 2405
BtgI	CCRYGG	1 cut(s)	650
BtgZI	GCGATG	2 cut(s)	487, 492
BtsCI	GGATG	5 cut(s)	562, 588, 1668, 1744, 2029
BtsIMutI	CAGTG	1 cut(s)	90
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	475, 588
CciI	TCATGA	2 cut(s)	1893, 2068
CfoI	GCGC	1 cut(s)	1385
Cfr13I	GGNCC	2 cut(s)	1287, 1508
Csp6I	GTAC	6 cut(s)	523, 1050, 1082, 1141, 1275, 1775
CviAII	CATG	8 cut(s)	340, 866, 871, 1496, 1765, 1894, 2069, 2441
CviQI	GTAC	6 cut(s)	523, 1050, 1082, 1141, 1275, 1775
DdeI	CTNAG	6 cut(s)	297, 600, 1225, 1460, 1828, 2385
DpnI	GATC	7 cut(s)	273, 388, 1005, 1160, 1521, 2100, 2372
DpnII	GATC	7 cut(s)	271, 386, 1003, 1158, 1519, 2098, 2370
DraIII	CACNNNGTG	1 cut(s)	1456
EaeI	YGGCCR	1 cut(s)	452
Eam1104I	CTCTTC	2 cut(s)	687, 2266
EarI	CTCTTC	2 cut(s)	687, 2266
Ecl136II	GAGCTC	1 cut(s)	2318
Eco130I	CCWWGG	4 cut(s)	1297, 1998, 2227, 2356
Eco147I	AGGCCT	1 cut(s)	2405
Eco24I	GRGCYC	2 cut(s)	1312, 2320
Eco31I	GGTCTC	1 cut(s)	1201
Eco47I	GGWCC	1 cut(s)	1508
Eco53kI	GAGCTC	1 cut(s)	2318
Eco57I	CTGAAG	9 cut(s)	129, 199, 725, 1046, 1363, 1543, 2054, 2216, 2384
Eco88I	CYCGRG	2 cut(s)	723, 1587
EcoICRI	GAGCTC	1 cut(s)	2318
EcoRII	CCWGG	4 cut(s)	976, 1363, 1467, 1985
EcoT14I	CCWWGG	4 cut(s)	1297, 1998, 2227, 2356
EcoT22I	ATGCAT	2 cut(s)	503, 2224
EcoT38I	GRGCYC	2 cut(s)	1312, 2320
ErhI	CCWWGG	4 cut(s)	1297, 1998, 2227, 2356
FaeI	CATG	8 cut(s)	343, 869, 874, 1499, 1768, 1897, 2072, 2444
FalI	AAGNNNNNCTT	6 cut(s)	8, 40, 1718, 1750, 2349, 2381
FaqI	GGGAC	2 cut(s)	807, 1494
FatI	CATG	8 cut(s)	339, 865, 870, 1495, 1764, 1893, 2068, 2440
FauI	CCCGC	1 cut(s)	2422
FauNDI	CATATG	2 cut(s)	898, 1879
FbaI	TGATCA	1 cut(s)	2370
Fnu4HI	GCNGC	8 cut(s)	285, 294, 360, 414, 486, 1108, 1813, 1860
FokI	GGATG	5 cut(s)	569, 595, 1655, 1751, 2036
FriOI	GRGCYC	2 cut(s)	1312, 2320
Fsp4HI	GCNGC	8 cut(s)	285, 294, 360, 414, 486, 1108, 1813, 1860
GlaI	GCGC	1 cut(s)	1384
GluI	GCNGC	8 cut(s)	285, 294, 360, 414, 486, 1108, 1813, 1860
GsaI	CCCAGC	2 cut(s)	1324, 1341
HaeIII	GGCC	6 cut(s)	454, 1028, 1288, 2003, 2133, 2405
HapII	CCGG	4 cut(s)	398, 1290, 2148, 2339
HhaI	GCGC	1 cut(s)	1385
Hin1II	CATG	8 cut(s)	343, 869, 874, 1499, 1768, 1897, 2072, 2444
Hin6I	GCGC	1 cut(s)	1383
HinP1I	GCGC	1 cut(s)	1383
HincII	GTYRAC	2 cut(s)	21, 2058
HindII	GTYRAC	2 cut(s)	21, 2058
HindIII	AAGCTT	2 cut(s)	704, 2107
HpaII	CCGG	4 cut(s)	398, 1290, 2148, 2339
HphI	GGTGA	8 cut(s)	124, 218, 584, 695, 1142, 1313, 1657, 1987
Hpy166II	GTNNAC	6 cut(s)	21, 525, 686, 1304, 2058, 2435
Hpy8I	GTNNAC	6 cut(s)	21, 525, 686, 1304, 2058, 2435
HpyAV	CCTTC	6 cut(s)	313, 869, 1070, 1169, 1387, 2191
HpyCH4III	ACNGT	9 cut(s)	94, 563, 1049, 1081, 1279, 1430, 2075, 2266, 2432
HpyCH4IV	ACGT	2 cut(s)	615, 2323
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 290, 293, 368, 995
HpyF3I	CTNAG	6 cut(s)	297, 600, 1225, 1460, 1828, 2385
HpySE526I	ACGT	2 cut(s)	615, 2323
Hsp92II	CATG	8 cut(s)	343, 869, 874, 1499, 1768, 1897, 2072, 2444
HspAI	GCGC	1 cut(s)	1383
Ksp22I	TGATCA	1 cut(s)	2370
Kzo9I	GATC	7 cut(s)	271, 386, 1003, 1158, 1519, 2098, 2370
LguI	GCTCTTC	1 cut(s)	2266
LmnI	GCTCC	4 cut(s)	104, 143, 2323, 2362
Lsp1109I	GCAGC	7 cut(s)	271, 280, 371, 425, 472, 1824, 1846
LweI	GCATC	4 cut(s)	510, 573, 643, 2401
MaeII	ACGT	2 cut(s)	615, 2323
MaeIII	GTNAC	5 cut(s)	130, 760, 823, 1690, 2037
MalI	GATC	7 cut(s)	273, 388, 1005, 1160, 1521, 2100, 2372
MboI	GATC	7 cut(s)	271, 386, 1003, 1158, 1519, 2098, 2370
MfeI	CAATTG	2 cut(s)	1980, 2238
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	1312, 2320
MlsI	TGGCCA	1 cut(s)	454
MluNI	TGGCCA	1 cut(s)	454
MlyI	GAGTC	2 cut(s)	803, 1408
MmeI	TCCRAC	1 cut(s)	1696
Mox20I	TGGCCA	1 cut(s)	454
Mph1103I	ATGCAT	2 cut(s)	503, 2224
MscI	TGGCCA	1 cut(s)	454
MseI	TTAA	8 cut(s)	27, 153, 1073, 1103, 1403, 1583, 1622, 1757
MslI	CAYNNNNRTG	1 cut(s)	1703
Msp20I	TGGCCA	1 cut(s)	454
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	4 cut(s)	398, 1290, 2148, 2339
MspR9I	CCNGG	5 cut(s)	978, 1290, 1365, 1469, 1987
MunI	CAATTG	2 cut(s)	1980, 2238
Mva1269I	GAATGC	3 cut(s)	1437, 1835, 2224
MvaI	CCWGG	4 cut(s)	978, 1365, 1469, 1987
MwoI	GCNNNNNNNGC	5 cut(s)	67, 290, 293, 368, 995
NciI	CCSGG	1 cut(s)	1290
NdeI	CATATG	2 cut(s)	898, 1879
NdeII	GATC	7 cut(s)	271, 386, 1003, 1158, 1519, 2098, 2370
NheI	GCTAGC	1 cut(s)	586
NlaIII	CATG	8 cut(s)	343, 869, 874, 1499, 1768, 1897, 2072, 2444
NlaIV	GGNNCC	3 cut(s)	383, 1362, 1510
NmeAIII	GCCGAG	2 cut(s)	791, 2339
NmuCI	GTSAC	4 cut(s)	130, 760, 823, 2037
NsiI	ATGCAT	2 cut(s)	503, 2224
NspV	TTCGAA	1 cut(s)	930
PagI	TCATGA	2 cut(s)	1893, 2068
PaqCI	CACCTGC	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	2405
PciSI	GCTCTTC	1 cut(s)	2266
PctI	GAATGC	3 cut(s)	1437, 1835, 2224
PfeI	GAWTC	9 cut(s)	232, 463, 850, 888, 1014, 1342, 1745, 2065, 2280
PflMI	CCANNNNNTGG	3 cut(s)	871, 1217, 1320
PkrI	GCNGC	8 cut(s)	286, 295, 361, 415, 487, 1109, 1814, 1861
PleI	GAGTC	2 cut(s)	803, 1408
PpsI	GAGTC	2 cut(s)	803, 1408
PshBI	ATTAAT	1 cut(s)	1622
Psp124BI	GAGCTC	1 cut(s)	2320
Psp6I	CCWGG	4 cut(s)	976, 1363, 1467, 1985
PspFI	CCCAGC	2 cut(s)	1320, 1337
PspGI	CCWGG	4 cut(s)	976, 1363, 1467, 1985
PspN4I	GGNNCC	3 cut(s)	383, 1362, 1510
PspPI	GGNCC	2 cut(s)	1287, 1508
PstI	CTGCAG	1 cut(s)	1422
PsuI	RGATCY	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	6 cut(s)	524, 1051, 1083, 1142, 1276, 1776
RsaNI	GTAC	6 cut(s)	523, 1050, 1082, 1141, 1275, 1775
RseI	CAYNNNNRTG	1 cut(s)	1703
SacI	GAGCTC	1 cut(s)	2320
SapI	GCTCTTC	1 cut(s)	2266
SaqAI	TTAA	8 cut(s)	27, 153, 1073, 1103, 1403, 1583, 1622, 1757
SatI	GCNGC	8 cut(s)	285, 294, 360, 414, 486, 1108, 1813, 1860
Sau3AI	GATC	7 cut(s)	271, 386, 1003, 1158, 1519, 2098, 2370
Sau96I	GGNCC	2 cut(s)	1287, 1508
ScaI	AGTACT	2 cut(s)	1051, 1083
SchI	GAGTC	2 cut(s)	803, 1408
ScrFI	CCNGG	5 cut(s)	978, 1290, 1365, 1469, 1987
SduI	GDGCHC	2 cut(s)	1312, 2320
SfaNI	GCATC	4 cut(s)	510, 573, 643, 2401
SfcI	CTRYAG	1 cut(s)	1418
SfuI	TTCGAA	1 cut(s)	930
SinI	GGWCC	1 cut(s)	1508
SmiMI	CAYNNNNRTG	1 cut(s)	1703
SmlI	CTYRAG	5 cut(s)	390, 855, 1633, 2110, 2213
SmoI	CTYRAG	5 cut(s)	390, 855, 1633, 2110, 2213
SpeI	ACTAGT	2 cut(s)	839, 911
SseBI	AGGCCT	1 cut(s)	2405
SsiI	CCGC	3 cut(s)	1107, 1644, 2415
SspI	AATATT	1 cut(s)	1152
SstI	GAGCTC	1 cut(s)	2320
StuI	AGGCCT	1 cut(s)	2405
StyD4I	CCNGG	5 cut(s)	976, 1288, 1363, 1467, 1985
StyI	CCWWGG	4 cut(s)	1297, 1998, 2227, 2356
TaaI	ACNGT	9 cut(s)	94, 563, 1049, 1081, 1279, 1430, 2075, 2266, 2432
TaiI	ACGT	2 cut(s)	618, 2326
TaqI	TCGA	5 cut(s)	36, 256, 466, 930, 994
TatI	WGTACW	5 cut(s)	522, 1049, 1081, 1140, 1774
TauI	GCSGC	1 cut(s)	1110
TfiI	GAWTC	9 cut(s)	232, 463, 850, 888, 1014, 1342, 1745, 2065, 2280
Tru1I	TTAA	8 cut(s)	27, 153, 1073, 1103, 1403, 1583, 1622, 1757
Tru9I	TTAA	8 cut(s)	27, 153, 1073, 1103, 1403, 1583, 1622, 1757
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	4 cut(s)	130, 760, 823, 2037
TseI	GCWGC	7 cut(s)	284, 293, 359, 413, 485, 1812, 1859
Tsp45I	GTSAC	4 cut(s)	130, 760, 823, 2037
TspRI	CASTG	1 cut(s)	97
Van91I	CCANNNNNTGG	3 cut(s)	871, 1217, 1320
VpaK11BI	GGWCC	1 cut(s)	1508
VspI	ATTAAT	1 cut(s)	1622
XapI	RAATTY	4 cut(s)	981, 1353, 1490, 2122
XbaI	TCTAGA	1 cut(s)	2008
XcmI	CCANNNNNNNNNTGG	1 cut(s)	868
XmaJI	CCTAGG	2 cut(s)	1297, 2227
ZrmI	AGTACT	2 cut(s)	1051, 1083
Zsp2I	ATGCAT	2 cut(s)	503, 2224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.