Rorug04G0447200

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
60273054 .. 60274646
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0447200.1

Sequence Viewer

Length: 960 bp
ATGTGGCCCCAAAAGCACCAGGACGAATTCAAGCGTATAGGGATTTCTGCCCCAACAGGGGTCCTCATGTTTGGCCCTCCTGGTTGCAGCAAAACCCTCATGGCTCGTGCTGTAGCTTCTGAGGCACGGCTGAATTTCCTTTCTGTGAAGGGTCCAGAACTTTATAGCAAATGGGTTGGTGAATCTGAGAAGGCTGTGAGATCAGTGTTCGCAAAGGCAGGGGCTAATGCTCCAGCAATCATTTTCTTTGATGAAATTGACGGTCTTGCTGCCATTCGTGGGAAGGAAAATGATGGAGTTTCTGTTTCAGATAGGGTCATAAGTCAACTTCTTGTCGAAATGGATGGTTTGCAAGAAAGAGTTGATGTCACTGTTATTGCTGCTACAAATCGGCCGGACAAGATTGATAGTGCGCTTCTAAGACCAGGGCGCTTTGATCGCTTGCTATATGTGGGACCTCCAGATGAGACTGATCGTGAAGAGATATTCCGTATCCATTTGAACAATATGAAATGCAGCTATATCAACAGACGTGATCTTGCTCGTCAGACCGCAGGCTATACAGGTGCTGATATTAGATTAATCTGTCGGGAAGCAGGTCTTGCAGCGATTGAGGAGAGCTTATGCCGTAAGGAGAGCCTTGATGCCTTAGAAATCAAAATGCAACATTTAGAGACTGCGATTAGACAAGTGAAGCCAACAAAAACTCAATTTTATCAAGAGCTATCAGGAAAGTTACACAAAAGCATTAGTTTATCAGAAACTGGGATTTTGCTTGCCCAACTGTTTGTTATTGAAACTGAATCAAAACATTACGAATTAAATTGTAACCACTTGGCCAAGTCTAATCTTGTAGATGTGCTTTATATCAGGATATTACAGATATTAAGCGCCACAGTAGCACATTCCGAGACTTTTGAGGCAAATGGCATTGCCAATACTGGTCACTTCCTCACATGA

Protein Analysis

319

Amino Acids

35.46

Weight (kDa)

6.47

Isoelectric Point (pI)

33.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 21 - 152 3e-42 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 178 - 208 1.6e-11 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 587
AciI CCGC 1 cut(s) 552
AcoI YGGCCR 2 cut(s) 392, 837
AcsI RAATTY 2 cut(s) 26, 133
AfiI CCNNNNNNNGG 3 cut(s) 57, 58, 279
AgsI TTSAA 3 cut(s) 31, 502, 797
AjiI CACGTC 1 cut(s) 533
AjnI CCWGG 3 cut(s) 18, 79, 424
AluBI AGCT 4 cut(s) 116, 519, 621, 724
AluI AGCT 4 cut(s) 116, 519, 621, 724
Alw26I GTCTC 3 cut(s) 461, 668, 905
AlwNI CAGNNNCTG 2 cut(s) 569, 764
AoxI GGCC 4 cut(s) 5, 73, 392, 837
ApeKI GCWGC 5 cut(s) 87, 269, 380, 516, 605
ApoI RAATTY 2 cut(s) 26, 133
AseI ATTAAT 1 cut(s) 581
AspLEI GCGC 3 cut(s) 415, 432, 893
AspS9I GGNCC 5 cut(s) 6, 61, 74, 152, 455
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 3 cut(s) 61, 152, 455
BalI TGGCCA 1 cut(s) 839
BauI CACGAG 1 cut(s) 105
BbvI GCAGC 5 cut(s) 99, 256, 367, 528, 617
BccI CCATC 2 cut(s) 287, 338
BceAI ACGGC 2 cut(s) 143, 612
BciT130I CCWGG 3 cut(s) 20, 81, 426
BciVI GTATCC 1 cut(s) 503
BcoDI GTCTC 3 cut(s) 461, 668, 905
BfmI CTRYAG 1 cut(s) 111
BfoI RGCGCY 2 cut(s) 433, 894
BfuAI ACCTGC 1 cut(s) 587
BfuI GTATCC 1 cut(s) 503
BisI GCNGC 5 cut(s) 88, 270, 381, 517, 606
BlsI GCNGC 5 cut(s) 89, 271, 382, 518, 607
Bme1390I CCNGG 3 cut(s) 20, 81, 426
Bme18I GGWCC 3 cut(s) 61, 152, 455
BmgBI CACGTC 1 cut(s) 533
BmgT120I GGNCC 5 cut(s) 6, 61, 74, 152, 455
BmiI GGNNCC 4 cut(s) 8, 62, 153, 456
BmrFI CCNGG 3 cut(s) 20, 81, 426
BmrI ACTGGG 1 cut(s) 774
BmsI GCATC 1 cut(s) 634
BmuI ACTGGG 1 cut(s) 774
BpmI CTGGAG 2 cut(s) 216, 444
BsaJI CCNNGG 1 cut(s) 425
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 58, 279
Bse1I ACTGG 2 cut(s) 769, 946
Bse3DI GCAATG 1 cut(s) 930
BseBI CCWGG 3 cut(s) 20, 81, 426
BseDI CCNNGG 1 cut(s) 425
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 3 cut(s) 57, 58, 279
BseMI GCAATG 1 cut(s) 930
BseMII CTCAG 2 cut(s) 111, 177
BseNI ACTGG 2 cut(s) 769, 946
BseRI GAGGAG 1 cut(s) 629
BseX3I CGGCCG 1 cut(s) 392
BseXI GCAGC 5 cut(s) 99, 256, 367, 528, 617
Bsh1285I CGRYCG 1 cut(s) 395
BshFI GGCC 4 cut(s) 7, 75, 394, 839
BsiEI CGRYCG 1 cut(s) 395
BsiSI CCGG 1 cut(s) 395
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 3 cut(s) 57, 58, 279
BsmAI GTCTC 3 cut(s) 461, 668, 905
BsmFI GGGAC 1 cut(s) 468
BsnI GGCC 4 cut(s) 7, 75, 394, 839
Bsp143I GATC 4 cut(s) 200, 436, 472, 535
BspACI CCGC 1 cut(s) 552
BspANI GGCC 4 cut(s) 7, 75, 394, 839
BspCNI CTCAG 2 cut(s) 112, 178
BspLI GGNNCC 4 cut(s) 8, 62, 153, 456
BspMI ACCTGC 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 930
BsrI ACTGG 2 cut(s) 769, 946
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 4 cut(s) 200, 436, 472, 535
BssSI CACGAG 1 cut(s) 105
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 3 cut(s) 20, 81, 426
Bst4CI ACNGT 4 cut(s) 263, 373, 786, 898
Bst6I CTCTTC 1 cut(s) 474
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 3 cut(s) 443, 556, 777
BstDEI CTNAG 4 cut(s) 120, 186, 419, 649
BstF5I GGATG 1 cut(s) 349
BstH2I RGCGCY 2 cut(s) 433, 894
BstHHI GCGC 3 cut(s) 415, 432, 893
BstKTI GATC 4 cut(s) 203, 439, 475, 538
BstMAI GTCTC 3 cut(s) 461, 668, 905
BstMBI GATC 4 cut(s) 200, 436, 472, 535
BstMCI CGRYCG 1 cut(s) 395
BstMWI GCNNNNNNNGC 5 cut(s) 13, 122, 438, 602, 899
BstNI CCWGG 3 cut(s) 20, 81, 426
BstSCI CCNGG 3 cut(s) 18, 79, 424
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 5 cut(s) 99, 256, 367, 528, 617
BstZI CGGCCG 1 cut(s) 392
BsuI GTATCC 1 cut(s) 503
BsuRI GGCC 4 cut(s) 7, 75, 394, 839
BtrI CACGTC 1 cut(s) 533
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 210, 369
BveI ACCTGC 1 cut(s) 587
Cac8I GCNNGC 3 cut(s) 443, 556, 777
CaiI CAGNNNCTG 2 cut(s) 569, 764
CfoI GCGC 3 cut(s) 415, 432, 893
Cfr13I GGNCC 5 cut(s) 6, 61, 74, 152, 455
CviAII CATG 3 cut(s) 67, 100, 957
DdeI CTNAG 4 cut(s) 120, 186, 419, 649
DpnI GATC 4 cut(s) 202, 438, 474, 537
DpnII GATC 4 cut(s) 200, 436, 472, 535
EaeI YGGCCR 2 cut(s) 392, 837
EagI CGGCCG 1 cut(s) 392
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
EclXI CGGCCG 1 cut(s) 392
Eco47I GGWCC 3 cut(s) 61, 152, 455
Eco52I CGGCCG 1 cut(s) 392
EcoO109I RGGNCCY 2 cut(s) 61, 455
EcoRI GAATTC 1 cut(s) 26
EcoRII CCWGG 3 cut(s) 18, 79, 424
FaeI CATG 3 cut(s) 70, 103, 960
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FaqI GGGAC 1 cut(s) 468
FatI CATG 3 cut(s) 66, 99, 956
Fnu4HI GCNGC 5 cut(s) 88, 270, 381, 517, 606
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 5 cut(s) 88, 270, 381, 517, 606
GlaI GCGC 3 cut(s) 414, 431, 892
GluI GCNGC 5 cut(s) 88, 270, 381, 517, 606
GsuI CTGGAG 2 cut(s) 216, 444
HaeII RGCGCY 2 cut(s) 433, 894
HaeIII GGCC 4 cut(s) 7, 75, 394, 839
HapII CCGG 1 cut(s) 395
HhaI GCGC 3 cut(s) 415, 432, 893
Hin1II CATG 3 cut(s) 70, 103, 960
Hin6I GCGC 3 cut(s) 413, 430, 891
HinP1I GCGC 3 cut(s) 413, 430, 891
HincII GTYRAC 1 cut(s) 326
HindII GTYRAC 1 cut(s) 326
HinfI GANTC 2 cut(s) 182, 803
HpaII CCGG 1 cut(s) 395
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 6 cut(s) 121, 187, 310, 549, 760, 910
Hpy188III TCNNGA 7 cut(s) 155, 461, 476, 590, 719, 729, 871
Hpy8I GTNNAC 1 cut(s) 326
HpyAV CCTTC 3 cut(s) 142, 184, 277
HpyCH4III ACNGT 4 cut(s) 263, 373, 786, 898
HpyCH4IV ACGT 1 cut(s) 532
HpyCH4V TGCA 5 cut(s) 87, 352, 516, 605, 664
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 122, 438, 602, 899
HpyF3I CTNAG 4 cut(s) 120, 186, 419, 649
HpySE526I ACGT 1 cut(s) 532
Hsp92II CATG 3 cut(s) 70, 103, 960
HspAI GCGC 3 cut(s) 413, 430, 891
Kzo9I GATC 4 cut(s) 200, 436, 472, 535
LmnI GCTCC 1 cut(s) 235
Lsp1109I GCAGC 5 cut(s) 99, 256, 367, 528, 617
LweI GCATC 1 cut(s) 634
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 4 cut(s) 367, 735, 827, 944
MalI GATC 4 cut(s) 202, 438, 474, 537
MboI GATC 4 cut(s) 200, 436, 472, 535
MboII GAAGA 1 cut(s) 491
MlsI TGGCCA 1 cut(s) 839
MluCI AATT 6 cut(s) 26, 133, 255, 710, 818, 823
MluNI TGGCCA 1 cut(s) 839
MnlI CCTC 7 cut(s) 74, 87, 107, 115, 468, 607, 913
Mox20I TGGCCA 1 cut(s) 839
MscI TGGCCA 1 cut(s) 839
MseI TTAA 3 cut(s) 581, 821, 887
Msp20I TGGCCA 1 cut(s) 839
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 3 cut(s) 20, 81, 426
MvaI CCWGG 3 cut(s) 20, 81, 426
MwoI GCNNNNNNNGC 5 cut(s) 13, 122, 438, 602, 899
NdeII GATC 4 cut(s) 200, 436, 472, 535
NlaIII CATG 3 cut(s) 70, 103, 960
NlaIV GGNNCC 4 cut(s) 8, 62, 153, 456
NmuCI GTSAC 2 cut(s) 367, 944
PfeI GAWTC 2 cut(s) 182, 803
PkrI GCNGC 5 cut(s) 89, 271, 382, 518, 607
PpuMI RGGWCCY 2 cut(s) 61, 455
PshBI ATTAAT 1 cut(s) 581
Psp5II RGGWCCY 2 cut(s) 61, 455
Psp6I CCWGG 3 cut(s) 18, 79, 424
PspGI CCWGG 3 cut(s) 18, 79, 424
PspN4I GGNNCC 4 cut(s) 8, 62, 153, 456
PspPI GGNCC 5 cut(s) 6, 61, 74, 152, 455
PspPPI RGGWCCY 2 cut(s) 61, 455
PstNI CAGNNNCTG 2 cut(s) 569, 764
SaqAI TTAA 3 cut(s) 581, 821, 887
SatI GCNGC 5 cut(s) 88, 270, 381, 517, 606
Sau3AI GATC 4 cut(s) 200, 436, 472, 535
Sau96I GGNCC 5 cut(s) 6, 61, 74, 152, 455
ScrFI CCNGG 3 cut(s) 20, 81, 426
SetI ASST 8 cut(s) 118, 460, 521, 535, 568, 601, 623, 726
SfaNI GCATC 1 cut(s) 634
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 3 cut(s) 61, 152, 455
Sse9I AATT 6 cut(s) 26, 133, 255, 710, 818, 823
SsiI CCGC 1 cut(s) 552
StyD4I CCNGG 3 cut(s) 18, 79, 424
TaaI ACNGT 4 cut(s) 263, 373, 786, 898
TaiI ACGT 1 cut(s) 535
TaqI TCGA 1 cut(s) 336
TasI AATT 6 cut(s) 26, 133, 255, 710, 818, 823
TfiI GAWTC 2 cut(s) 182, 803
Tru1I TTAA 3 cut(s) 581, 821, 887
Tru9I TTAA 3 cut(s) 581, 821, 887
TscAI CASTG 2 cut(s) 210, 376
TseFI GTSAC 2 cut(s) 367, 944
TseI GCWGC 5 cut(s) 87, 269, 380, 516, 605
Tsp45I GTSAC 2 cut(s) 367, 944
TspDTI ATGAA 2 cut(s) 267, 524
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 2 cut(s) 210, 376
VpaK11BI GGWCC 3 cut(s) 61, 152, 455
VspI ATTAAT 1 cut(s) 581
XapI RAATTY 2 cut(s) 26, 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.