Rh5DG073400

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
6419503 .. 6424684
5182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG073400.1

Sequence Viewer

Length: 2694 bp
ATGGTGCAGGCATTGGCAGTTTGTGAAGCAGGAGAATGGAAGAGGATAATGCTGGAAACAGATGCAAAGTTGTCTAGTTTGAATAACAAACTGATTCTGGTTGATGGTGAATATTCTTGTCATACGGGAATGCAAGCTAAGGAATCAGAATCAGAATCAGAATCAGAATCAGCTGTCGAACACAACAAGAGAGTTGAAGCTGAAGATGAGAAAAAAATCACTAACATTGGAGCAATCATTGATGTTAATTCCCGTATCGGGAAAGAACAGAAAGCTGCTATGGAAATTGCAGCTGAAAACTTCAACAACCAGTCAGACACTCATGAGCTAATCCTTCATTTTCGAGATTCTGGCCGCGACCCTTTTCTTGCTGCTTATGCTGCTAAACATTTGATAAGGGAACAAAAGGCACAAGTGGTAATTGGCATGGAAACTTGGCAGGAAGCAGTTACAGTAGCTGATGTGGTCAAAAACCTATCTGATCAAATTCCGGTCATTTCCTTTGCAGCACCCACCATATCCCCGCCACTATTACAACGGCGTTGGCCTTCCTTGATACGAATGGCTACCGATGGTGCTGCTCAGATGAAATGCATTGGAGATATAGTTAATGCTTACAACTGGAAAAGGGTTGTTGTAATATATGAAGATGATGGTTATGGTGGTGGTGTGGGGAGGCTAGCTCTTTTATCTGAGACTCTAAGAAATGTTGGTTCTACAATTGAGCTTCGTATAGTTCTCCCACGACTTTCTGAGCCTGATACAAATTGGGATGAAATAAAGAAGCAGCTGTTGGAGCTTTCCAATGTAAACTCTCGGGCATTTATAGTTCTTCAGTCATCTTTACCAACAGTAACTGGTCTATTCAAAGTGGCTAGGAAGATGGGATTTGTAGGAAATGATTCAGCTTGGATAATCACAGAGAGTATTGCTAGTTTGCTTGACCCTCATGGCAACTACGATATGGAAGGAACTCTGGGAATCAAGACCTACTACGCCAATGAGTCTAGTTCTTATGCTGAATTCCACAAGGAATTCCAAGCTAAGTATGCAGAAGAAAATAACTCCAAGCCAGGAATTTATGCTCTTCGAGCATATGATACTATTAATGCCATTTCACAGGCCATGGAAGGAATCCCTAATAACACCACTAGTACTAGCCTTCAGGTTATGATAACTAGATCGTTGAGCAATTACAACGGTTTAAGTGGGAAAATGCAACTAAAAGGAGGTGAGGTACCGCTGGATTCTCCGAGATTCAGGATCATAAATATTGTGGGTGGGAAGACAGATAACGAATTAAACTTTTGGATACCAGACTTTGGATTTTCAGAAAGCCTTGAAAAAGTATCAGACAAATACAGAAGTAATGATGGTGTTGGCAAAGTCATTTGGCCCGGGAACCCAACACTGCCCTCCAAAGGCTGGGCAATGCCCACTGATGAGAAGCCAATGAAAATTTTGCTCCCAGCTTCCCACGAAAATTTTGTAAGGCATATCAGCGGGGAGAACTCAAATCAGATGGGAAAAGAGGGTTTATGTTTAGGAAAGGGAAAAGACGGTTTATGCTCAGGAAAGATATATGACGGTTTGAGTATTGATCTTTTCTGTTGCGTGCTATCTAAATTGAATTATTCCTTGCCACATGAATTTTATAAGGCCAATGGCACTTACAATGATATGGTAGAACAAGTCTATACCAAGACTTACGATGCTGTGATTGGCGATATGACTGTACTTGCATCGCGAATTGACAAAGTGGATTTCACTCAACCATATCTGGAGTCTGGTTTGTCATTGATAGTACCAGATAAATCTAATGAGTCAACATGGCTGTTTATGAAACCTTTCACATGGCAGATGTGGGTGGCTAGTTGTGCCATCTTAATCTACACTATGTTAATAATATGGTTCCTGGAGGGTCCTTCCAGTCCAGAATTTGATGGTCCATTGATGAATCAGATCGCCACAGCTACTTGGTTCTCCTTCTCATCTCTGTTCTTTGCTCACAGAGAGAAAATCTATAGCAATTTGACACGAGTGGTTTTCATAGTGTGGCTGTTTGTTGTATTCATCCTAAACTCAAGCTACACTGCTAATCTGTCTTCGATGCTTACAATTCAACGACTGAGCCCGAATGTAACAGACATTGAAATGTTAAGGACAACCAACTCATTAGTTGGTTGTGATAACGATTCATTTGTAAGGGATTACCTGGAGAATGTTCTTCAATTAAAAAACATCGAGACAGTAGAGAGCAACTTAAAACCCAAAACCTTCAGCAGCAACACGAGATTATCTGCTGTATTTCTTGAACTCCCATATGCAGAAGTTTTCATGAACAATTACTGTAAGGGATTTACCAACACCAAAGCCACCTACAGTTTTGGAGGCTTTAGCTTTGCATTTCAGAAAGGTTCTCCAATAGCGAGGAATTTCTCTATGGTCATCCTAGATCTATTGGAGAACGGAAAAATGAGAGAACTTCAAGATCACTGGTTGAATCCGAGCAAATGTCCAACCAATACAACTTCCGATATGCCAGAAAGCTTGACCATCGAGAGCTTTTGGGGCATCTTTGTAATATCCGGTGCGACTTCCACCCTCTGTCTTCTATCTTCTGCCATCTTGAAAAAGTTTGGACACCAAGAAGCATCCGGAACACGCCCTGAAAATTCCGTACAAGTGCTCTAA

Protein Analysis

897

Amino Acids

100.09

Weight (kDa)

5.37

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 85 - 407 8.9e-18 Periplasmic binding protein
ANF_receptor PF01094 91 - 426 1.9e-39 Receptor family ligand binding region
SBP_bac_3 PF00497 528 - 835 1.3e-11 Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd PF10613 553 - 603 2.6e-07 Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan PF00060 618 - 865 1.1e-28 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1656
Acc65I GGTACC 1 cut(s) 1237
AccB1I GGYRCC 1 cut(s) 1237
AccB7I CCANNNNNTGG 2 cut(s) 1322, 1425
AccII CGCG 2 cut(s) 357, 1747
AccIII TCCGGA 1 cut(s) 2657
AciI CCGC 4 cut(s) 355, 524, 1241, 1503
AclWI GGATC 1 cut(s) 1271
AcoI YGGCCR 1 cut(s) 352
AcuI CTGAAG 4 cut(s) 222, 818, 1148, 2263
AfaI GTAC 5 cut(s) 1156, 1239, 1737, 1806, 2682
AfiI CCNNNNNNNGG 4 cut(s) 258, 1322, 1421, 1425
AhlI ACTAGT 1 cut(s) 1151
AjnI CCWGG 3 cut(s) 1072, 1914, 2214
AjuI GAANNNNNNNTTGG 2 cut(s) 776, 808
Alw21I GWGCWC 1 cut(s) 2691
Alw26I GTCTC 2 cut(s) 689, 2240
AlwI GGATC 1 cut(s) 1271
AlwNI CAGNNNCTG 2 cut(s) 458, 857
Ama87I CYCGRG 2 cut(s) 816, 1397
Aor13HI TCCGGA 1 cut(s) 2657
AoxI GGCC 5 cut(s) 352, 545, 1122, 1394, 1659
ApeKI GCWGC 8 cut(s) 275, 290, 371, 380, 506, 578, 787, 2283
AseI ATTAAT 1 cut(s) 1107
Asp700I GAANNNNTTC 2 cut(s) 901, 1847
Asp718I GGTACC 1 cut(s) 1237
AspS9I GGNCC 3 cut(s) 1395, 1922, 1946
AsuC2I CCSGG 2 cut(s) 1398, 1399
AsuHPI GGTGA 2 cut(s) 119, 1244
AsuNHI GCTAGC 1 cut(s) 679
AvaI CYCGRG 2 cut(s) 816, 1397
AvaII GGWCC 2 cut(s) 1922, 1946
BanI GGYRCC 1 cut(s) 1237
BanII GRGCYC 1 cut(s) 2135
BauI CACGAG 2 cut(s) 2037, 2290
BbsI GAAGAC 3 cut(s) 1292, 2097, 2603
Bbv12I GWGCWC 1 cut(s) 2691
BbvI GCAGC 8 cut(s) 262, 302, 358, 367, 518, 565, 799, 2295
BceAI ACGGC 1 cut(s) 554
BcgI CGANNNNNNTGC 2 cut(s) 560, 594
BciT130I CCWGG 3 cut(s) 1074, 1916, 2216
BciVI GTATCC 1 cut(s) 1305
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 2 cut(s) 1398, 1399
BcoDI GTCTC 2 cut(s) 689, 2240
BcuI ACTAGT 1 cut(s) 1151
BfmI CTRYAG 2 cut(s) 2023, 2380
BfuI GTATCC 1 cut(s) 1305
BglII AGATCT 1 cut(s) 2455
BisI GCNGC 9 cut(s) 276, 291, 355, 372, 381, 507, 579, 788, 2284
BlsI GCNGC 9 cut(s) 277, 292, 356, 373, 382, 508, 580, 789, 2285
BmcAI AGTACT 1 cut(s) 1156
Bme1390I CCNGG 5 cut(s) 1074, 1398, 1399, 1916, 2216
Bme18I GGWCC 2 cut(s) 1922, 1946
BmeT110I CYCGRG 2 cut(s) 816, 1397
BmgT120I GGNCC 3 cut(s) 1395, 1922, 1946
BmiI GGNNCC 4 cut(s) 1239, 1403, 1913, 1923
BmrFI CCNGG 5 cut(s) 1074, 1398, 1399, 1916, 2216
BmsI GCATC 6 cut(s) 52, 1702, 1751, 2100, 2583, 2663
BmtI GCTAGC 1 cut(s) 683
BpiI GAAGAC 3 cut(s) 1292, 2097, 2603
BplI GAGNNNNNCTC 2 cut(s) 667, 699
BpmI CTGGAG 3 cut(s) 1802, 1937, 2237
Bpu10I CCTNAGC 2 cut(s) 138, 1570
BpuEI CTTGAG 1 cut(s) 2068
BpuMI CCSGG 2 cut(s) 1398, 1399
BsaJI CCNNGG 2 cut(s) 1125, 1397
BsaWI WCCGGW 3 cut(s) 490, 2588, 2657
BsaXI ACNNNNNCTCC 4 cut(s) 591, 621, 1221, 1251
Bsc4I CCNNNNNNNGG 4 cut(s) 258, 1322, 1421, 1425
Bse1I ACTGG 5 cut(s) 310, 626, 862, 1929, 2501
Bse3DI GCAATG 1 cut(s) 1437
BseAI TCCGGA 1 cut(s) 2657
BseBI CCWGG 3 cut(s) 1074, 1916, 2216
BseDI CCNNGG 2 cut(s) 1125, 1397
BseGI GGATG 4 cut(s) 778, 2073, 2448, 2654
BseLI CCNNNNNNNGG 4 cut(s) 258, 1322, 1421, 1425
BseMI GCAATG 1 cut(s) 1437
BseMII CTCAG 5 cut(s) 596, 684, 744, 1584, 2120
BseNI ACTGG 5 cut(s) 310, 626, 862, 1929, 2501
BseXI GCAGC 8 cut(s) 262, 302, 358, 367, 518, 565, 799, 2295
BseYI CCCAGC 2 cut(s) 1425, 1468
BsgI GTGCAG 1 cut(s) 26
Bsh1236I CGCG 2 cut(s) 357, 1747
BshFI GGCC 5 cut(s) 354, 547, 1124, 1396, 1661
BshNI GGYRCC 1 cut(s) 1237
BsiHKAI GWGCWC 1 cut(s) 2691
BsiHKCI CYCGRG 2 cut(s) 816, 1397
BsiSI CCGG 4 cut(s) 491, 1398, 2589, 2658
BslI CCNNNNNNNGG 4 cut(s) 258, 1322, 1421, 1425
BsmAI GTCTC 2 cut(s) 689, 2240
BsmI GAATGC 1 cut(s) 135
BsnI GGCC 5 cut(s) 354, 547, 1124, 1396, 1661
BsoBI CYCGRG 2 cut(s) 816, 1397
Bsp1286I GDGCHC 2 cut(s) 2135, 2691
Bsp13I TCCGGA 1 cut(s) 2657
Bsp143I GATC 7 cut(s) 481, 1181, 1263, 1600, 1962, 2455, 2491
Bsp19I CCATGG 1 cut(s) 1125
Bsp68I TCGCGA 1 cut(s) 1747
BspACI CCGC 4 cut(s) 355, 524, 1241, 1503
BspANI GGCC 5 cut(s) 354, 547, 1124, 1396, 1661
BspCNI CTCAG 5 cut(s) 595, 685, 745, 1583, 2121
BspEI TCCGGA 1 cut(s) 2657
BspFNI CGCG 2 cut(s) 357, 1747
BspHI TCATGA 2 cut(s) 322, 2337
BspLI GGNNCC 4 cut(s) 1239, 1403, 1913, 1923
BspOI GCTAGC 1 cut(s) 683
BspPI GGATC 1 cut(s) 1271
BspQI GCTCTTC 1 cut(s) 1092
BspT107I GGYRCC 1 cut(s) 1237
BsrDI GCAATG 1 cut(s) 1437
BsrI ACTGG 5 cut(s) 310, 626, 862, 1929, 2501
BssECI CCNNGG 2 cut(s) 1125, 1397
BssMI GATC 7 cut(s) 481, 1181, 1263, 1600, 1962, 2455, 2491
BssSI CACGAG 2 cut(s) 2037, 2290
BssT1I CCWWGG 1 cut(s) 1125
Bst2BI CACGAG 2 cut(s) 2037, 2290
Bst2UI CCWGG 3 cut(s) 1074, 1916, 2216
Bst4CI ACNGT 9 cut(s) 454, 853, 1202, 1562, 1589, 1735, 2251, 2351, 2384
Bst6I CTCTTC 2 cut(s) 35, 1092
BstC8I GCNNGC 4 cut(s) 9, 135, 681, 1616
BstDEI CTNAG 8 cut(s) 138, 582, 693, 701, 753, 1044, 1570, 2129
BstDSI CCRYGG 1 cut(s) 1125
BstF5I GGATG 4 cut(s) 778, 2073, 2448, 2654
BstFNI CGCG 2 cut(s) 357, 1747
BstKTI GATC 7 cut(s) 484, 1184, 1266, 1603, 1965, 2458, 2494
BstMAI GTCTC 2 cut(s) 689, 2240
BstMBI GATC 7 cut(s) 481, 1181, 1263, 1600, 1962, 2455, 2491
BstMWI GCNNNNNNNGC 7 cut(s) 377, 380, 796, 1049, 1091, 1877, 2571
BstNI CCWGG 3 cut(s) 1074, 1916, 2216
BstSCI CCNGG 5 cut(s) 1072, 1396, 1397, 1914, 2214
BstSFI CTRYAG 2 cut(s) 2023, 2380
BstUI CGCG 2 cut(s) 357, 1747
BstV1I GCAGC 8 cut(s) 262, 302, 358, 367, 518, 565, 799, 2295
BstV2I GAAGAC 3 cut(s) 1292, 2097, 2603
BstX2I RGATCY 1 cut(s) 2455
BstYI RGATCY 1 cut(s) 2455
BsuI GTATCC 1 cut(s) 1305
BsuRI GGCC 5 cut(s) 354, 547, 1124, 1396, 1661
BtgI CCRYGG 1 cut(s) 1125
BtgZI GCGATG 1 cut(s) 1728
BtsCI GGATG 4 cut(s) 778, 2073, 2448, 2654
BtsI GCAGTG 2 cut(s) 1409, 2091
BtsIMutI CAGTG 4 cut(s) 1409, 1437, 2091, 2494
BtuMI TCGCGA 1 cut(s) 1747
Cac8I GCNNGC 4 cut(s) 9, 135, 681, 1616
CaiI CAGNNNCTG 2 cut(s) 458, 857
CciI TCATGA 2 cut(s) 322, 2337
Cfr13I GGNCC 3 cut(s) 1395, 1922, 1946
Cfr9I CCCGGG 1 cut(s) 1397
Csp6I GTAC 5 cut(s) 1155, 1238, 1736, 1805, 2681
CviAII CATG 8 cut(s) 323, 427, 950, 1126, 1646, 1830, 1854, 2338
CviQI GTAC 5 cut(s) 1155, 1238, 1736, 1805, 2681
DdeI CTNAG 8 cut(s) 138, 582, 693, 701, 753, 1044, 1570, 2129
DpnI GATC 7 cut(s) 483, 1183, 1265, 1602, 1964, 2457, 2493
DpnII GATC 7 cut(s) 481, 1181, 1263, 1600, 1962, 2455, 2491
EaeI YGGCCR 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 35, 1092
EarI CTCTTC 2 cut(s) 35, 1092
Eco130I CCWWGG 1 cut(s) 1125
Eco24I GRGCYC 1 cut(s) 2135
Eco47I GGWCC 2 cut(s) 1922, 1946
Eco57I CTGAAG 4 cut(s) 222, 818, 1148, 2263
Eco88I CYCGRG 2 cut(s) 816, 1397
EcoO109I RGGNCCY 1 cut(s) 1922
EcoRI GAATTC 2 cut(s) 1022, 1034
EcoRII CCWGG 3 cut(s) 1072, 1914, 2214
EcoT14I CCWWGG 1 cut(s) 1125
EcoT22I ATGCAT 1 cut(s) 596
EcoT38I GRGCYC 1 cut(s) 2135
ErhI CCWWGG 1 cut(s) 1125
FaeI CATG 8 cut(s) 326, 430, 953, 1129, 1649, 1833, 1857, 2341
FatI CATG 8 cut(s) 322, 426, 949, 1125, 1645, 1829, 1853, 2337
FauI CCCGC 2 cut(s) 531, 1496
FauNDI CATATG 2 cut(s) 1096, 2323
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 9 cut(s) 276, 291, 355, 372, 381, 507, 579, 788, 2284
FokI GGATG 4 cut(s) 785, 2060, 2435, 2641
FriOI GRGCYC 1 cut(s) 2135
Fsp4HI GCNGC 9 cut(s) 276, 291, 355, 372, 381, 507, 579, 788, 2284
GluI GCNGC 9 cut(s) 276, 291, 355, 372, 381, 507, 579, 788, 2284
GsaI CCCAGC 2 cut(s) 1429, 1472
GsuI CTGGAG 3 cut(s) 1802, 1937, 2237
HaeIII GGCC 5 cut(s) 354, 547, 1124, 1396, 1661
HapII CCGG 4 cut(s) 491, 1398, 2589, 2658
Hin1II CATG 8 cut(s) 326, 430, 953, 1129, 1649, 1833, 1857, 2341
HincII GTYRAC 1 cut(s) 1827
HindII GTYRAC 1 cut(s) 1827
HindIII AAGCTT 1 cut(s) 2548
HpaII CCGG 4 cut(s) 491, 1398, 2589, 2658
HphI GGTGA 2 cut(s) 119, 1244
Hpy166II GTNNAC 2 cut(s) 811, 1827
Hpy8I GTNNAC 2 cut(s) 811, 1827
HpyAV CCTTC 8 cut(s) 344, 558, 962, 1124, 1172, 1935, 1996, 2287
HpyCH4III ACNGT 9 cut(s) 454, 853, 1202, 1562, 1589, 1735, 2251, 2351, 2384
HpyF10VI GCNNNNNNNGC 7 cut(s) 377, 380, 796, 1049, 1091, 1877, 2571
HpyF3I CTNAG 8 cut(s) 138, 582, 693, 701, 753, 1044, 1570, 2129
Hsp92II CATG 8 cut(s) 326, 430, 953, 1129, 1649, 1833, 1857, 2341
Kpn2I TCCGGA 1 cut(s) 2657
KpnI GGTACC 1 cut(s) 1241
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 7 cut(s) 481, 1181, 1263, 1600, 1962, 2455, 2491
LguI GCTCTTC 1 cut(s) 1092
LmnI GCTCC 3 cut(s) 230, 796, 1470
Lsp1109I GCAGC 8 cut(s) 262, 302, 358, 367, 518, 565, 799, 2295
LweI GCATC 6 cut(s) 52, 1702, 1751, 2100, 2583, 2663
MaeIII GTNAC 3 cut(s) 448, 853, 2140
MalI GATC 7 cut(s) 483, 1183, 1265, 1602, 1964, 2457, 2493
MboI GATC 7 cut(s) 481, 1181, 1263, 1600, 1962, 2455, 2491
MfeI CAATTG 1 cut(s) 720
MflI RGATCY 1 cut(s) 2455
MhlI GDGCHC 2 cut(s) 2135, 2691
MlyI GAGTC 4 cut(s) 691, 1013, 1793, 1832
MmeI TCCRAC 2 cut(s) 774, 2543
Mph1103I ATGCAT 1 cut(s) 596
MroI TCCGGA 1 cut(s) 2657
MroXI GAANNNNTTC 2 cut(s) 901, 1847
MslI CAYNNNNRTG 1 cut(s) 2153
MspA1I CMGCKG 5 cut(s) 173, 293, 790, 1243, 1503
MspI CCGG 4 cut(s) 491, 1398, 2589, 2658
MspR9I CCNGG 5 cut(s) 1074, 1398, 1399, 1916, 2216
MunI CAATTG 1 cut(s) 720
Mva1269I GAATGC 1 cut(s) 135
MvaI CCWGG 3 cut(s) 1074, 1916, 2216
MvnI CGCG 2 cut(s) 357, 1747
MwoI GCNNNNNNNGC 7 cut(s) 377, 380, 796, 1049, 1091, 1877, 2571
NciI CCSGG 2 cut(s) 1398, 1399
NcoI CCATGG 1 cut(s) 1125
NdeI CATATG 2 cut(s) 1096, 2323
NdeII GATC 7 cut(s) 481, 1181, 1263, 1600, 1962, 2455, 2491
NheI GCTAGC 1 cut(s) 679
NlaIII CATG 8 cut(s) 326, 430, 953, 1129, 1649, 1833, 1857, 2341
NlaIV GGNNCC 4 cut(s) 1239, 1403, 1913, 1923
NruI TCGCGA 1 cut(s) 1747
NsiI ATGCAT 1 cut(s) 596
PagI TCATGA 2 cut(s) 322, 2337
PciSI GCTCTTC 1 cut(s) 1092
PctI GAATGC 1 cut(s) 135
PdmI GAANNNNTTC 2 cut(s) 901, 1847
PflMI CCANNNNNTGG 2 cut(s) 1322, 1425
PfoI TCCNGGA 1 cut(s) 1914
PkrI GCNGC 9 cut(s) 277, 292, 356, 373, 382, 508, 580, 789, 2285
PleI GAGTC 4 cut(s) 691, 1012, 1792, 1831
PpsI GAGTC 4 cut(s) 691, 1012, 1792, 1831
PpuMI RGGWCCY 1 cut(s) 1922
PshBI ATTAAT 1 cut(s) 1107
PsiI TTATAA 1 cut(s) 1656
Psp5II RGGWCCY 1 cut(s) 1922
Psp6I CCWGG 3 cut(s) 1072, 1914, 2214
PspFI CCCAGC 2 cut(s) 1425, 1468
PspGI CCWGG 3 cut(s) 1072, 1914, 2214
PspN4I GGNNCC 4 cut(s) 1239, 1403, 1913, 1923
PspPI GGNCC 3 cut(s) 1395, 1922, 1946
PspPPI RGGWCCY 1 cut(s) 1922
PstNI CAGNNNCTG 2 cut(s) 458, 857
PsuI RGATCY 1 cut(s) 2455
PvuII CAGCTG 3 cut(s) 173, 293, 790
RruI TCGCGA 1 cut(s) 1747
RsaI GTAC 5 cut(s) 1156, 1239, 1737, 1806, 2682
RsaNI GTAC 5 cut(s) 1155, 1238, 1736, 1805, 2681
RseI CAYNNNNRTG 1 cut(s) 2153
SapI GCTCTTC 1 cut(s) 1092
SatI GCNGC 9 cut(s) 276, 291, 355, 372, 381, 507, 579, 788, 2284
Sau3AI GATC 7 cut(s) 481, 1181, 1263, 1600, 1962, 2455, 2491
Sau96I GGNCC 3 cut(s) 1395, 1922, 1946
ScaI AGTACT 1 cut(s) 1156
SchI GAGTC 4 cut(s) 691, 1013, 1793, 1832
ScrFI CCNGG 5 cut(s) 1074, 1398, 1399, 1916, 2216
SduI GDGCHC 2 cut(s) 2135, 2691
SfaNI GCATC 6 cut(s) 52, 1702, 1751, 2100, 2583, 2663
SfcI CTRYAG 2 cut(s) 2023, 2380
SinI GGWCC 2 cut(s) 1922, 1946
SmaI CCCGGG 1 cut(s) 1399
SmiMI CAYNNNNRTG 1 cut(s) 2153
SmlI CTYRAG 1 cut(s) 2083
SmoI CTYRAG 1 cut(s) 2083
SpeI ACTAGT 1 cut(s) 1151
SsiI CCGC 4 cut(s) 355, 524, 1241, 1503
SspI AATATT 2 cut(s) 113, 1273
StyD4I CCNGG 5 cut(s) 1072, 1396, 1397, 1914, 2214
StyI CCWWGG 1 cut(s) 1125
TaaI ACNGT 9 cut(s) 454, 853, 1202, 1562, 1589, 1735, 2251, 2351, 2384
TaqI TCGA 6 cut(s) 177, 343, 1090, 2108, 2244, 2559
TatI WGTACW 2 cut(s) 1154, 1735
TauI GCSGC 1 cut(s) 357
TscAI CASTG 4 cut(s) 1416, 1444, 2098, 2501
TseI GCWGC 8 cut(s) 275, 290, 371, 380, 506, 578, 787, 2283
TspGWI ACGGA 2 cut(s) 2484, 2668
TspMI CCCGGG 1 cut(s) 1397
TspRI CASTG 4 cut(s) 1416, 1444, 2098, 2501
Van91I CCANNNNNTGG 2 cut(s) 1322, 1425
VpaK11BI GGWCC 2 cut(s) 1922, 1946
VspI ATTAAT 1 cut(s) 1107
XmaI CCCGGG 1 cut(s) 1397
XmnI GAANNNNTTC 2 cut(s) 901, 1847
ZrmI AGTACT 1 cut(s) 1156
Zsp2I ATGCAT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.