Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Forward (+)

4816756 .. 4820070

Gene Structure 3315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2247 bp

ATGTCTTCTCCCTCTGCAAACCTTTACAAAGTCAAAATGTTTTGGCTCTTGTCTTCTCTGCTTATCCATTTGTTCATCATTCTCTCCAATGGAGTTGCAGCTCAAAATGATATCAGTGTCACAAACGTTGGAGCAATCGTTGATTTTAATTCTCGTATCGGTAAAGAGCAGATAGCTGCCATGGAAATAGCAGCTGAAAGCTTCAACAAGTCGTCCAACACTCGTAAACTACTCATTCATTTTCGAAACTCGGAAGGAAAGCCCTTCCTTGCTGGTTCTGCTGCTGAAGAGCTGATGAAGGAAGTAAAAGTACAAGTGATTGTTGGCATGGAGTATTGGCCAGAAGCAGTTATAGTAGCTGATCTCGTTAGAAACCAATCTCAAGTTGTCCCGGTAATTTCATTTGGTGCACCTCTTATAACTCCACCACTGATCGAAAGCCGGTGGCCTTTCTTGATACGAATGACAAGTGATGGTTCAACTCAAATGAACTGCATTGCAGACATAGTTGCTGCATACAAATGGAGAAGGGTAGTTGTGATATACGAAGACGACGGTTATGGTGGTTATGTTGGCTTGCTAGGTCTTTTATCTGAGGCTCTACAAGAGGCTAATGCAAAGATTGAGGATCATTTGGTTCTTCCGATATCTTCAGTGCCTGAGCCTAATTTTGATGAGCTAAAAGAGTTGTTAAAGCTTCCCACATTTCAGTCTCGGGTGTTTATTGTTCTTCAATCATCTTTACCAACAGTGAATAATCTGTTCGAAGTGGCTAAGACGATGGGACTTGTAGGAAGAGACTCGGCTTGGATATTCACAGAATGTATCACTAGTTTACTTGCTCCTCAAGGTAACACCTATATGGAAGGAGCTCTGGGAATCAAGACTTACTACAGTGAGTCTACCTCTTATGCTGAATTCCAGAAGGAATTCCAAGCCAAATTCCAAGCCAAGTATGCAGAAGGATATAACTCCAAGCCAGGAATTTATACTCTTCGAGCATACGATACTATTAATGTCATTTCACAAGCCATAGAAAGAATGCGAGGGACTAGTACCAGCCTTCAGGAGATGATAACTGCATTGTTAAGTGGGAAAATGAGCTTGAAAGAAGGTGAAGCGCAATTGGTTTCTCCGAGACTGAGGATCCTTAATGTTGTGGATGGGAAGATGAACACAGAGTTAAACTTCTGGACACCAAAGGGGTTTTCAGAAGGCCTTGACACAAATATAACAGATGTTGTTGGTAAAGTACTTTGGCCTGGGAACCTAACACGTACCCCGAAAGGATGGGCAATGCCTAGTGTTGAAAGGCCATTGAATATTGGGGTTCCAGGAAAAACTTCCTTCAGCAAATTTGTAAAAGTGGAGTATAAAGACAATCCAGATGAGAATACCTATGACGGTTTCTGCATTCAAATTTTCTATAAGGTTTTAAGTCGTTTGAATTATCCTCTGCCGTATGAGTTTCAAGCTGACAATGCAAGCTATGTTGAACTGGTTGAAAAAGTCCGGAACAAGACGTATGATGCTGTGGTTGGTGATATAACTGTTCTAGCTGACCGGATGGACCAGGTGGAATTCACTCAGCCCTATATGGGGTCAGGGTTGTCAATGATAGTACCAGAAGTAACTGATGAGGAGGCAAGATGGATGTTTATGCAACCTTTCACATGGCAAATGTGGGTGGTCACCGGTTCCATTTTAGTCTACACAATGTTGATAGTTTGGTTCCTAGAGCGCCCAACCAATCCCGACTTTCGTGGTCCATTGATGGATCAGATTGGTACAGCAGTTTGGTTCACCTTCTCCTCTTTGTTCTTTGCTCACCGAGAAAAAGTCTTCGGCAACTTAACTCGAGTAGTTTTTCTTATATGGCTATTTGTTGTATTGATCCTTACCTCAAGCTACACTGCTAATCTCTCTTCAATGCTCACCGTTCAACGGCTGCAACCGAATGTAACGGACATGCAAATGCTAGTAAACAGCAGTTCACCAGTTGGTGTGGATGGGGATTCATTCTTGTACACATACATGAAGGACTTTATTGGATTCAAGCAATATAATTTGATCAATTTATCGAGTGAATACAGCTACACAGGCAACTTCAAAAACAGAACAATATCAGCTGCCTTTCTTGAACTTCCCTACGCTGATGTATTCCTGAACAAGTACTGTGAGGGATACACTGCTACCACTCCTACCCTTAGATTTGGAGGGTTAAGCTTTGTGAGTATTTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

749

Amino Acids

84.18

Weight (kDa)

5.27

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	53 - 364	1.9e-15	Periplasmic binding protein
ANF_receptor	PF01094	59 - 357	1.3e-38	Receptor family ligand binding region
SBP_bac_3	PF00497	457 - 546	5.3e-09	Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd	PF10613	459 - 542	8.1e-08	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	558 - 723	3.9e-26	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
AccI	GTMKAC	2 cut(s)	902, 1710
AccIII	TCCGGA	1 cut(s)	1512
AclI	AACGTT	1 cut(s)	126
AclWI	GGATC	5 cut(s)	636, 1141, 1154, 1785, 1888
AcoI	YGGCCR	1 cut(s)	338
AcsI	RAATTY	7 cut(s)	917, 929, 941, 984, 1355, 1419, 1580
AcuI	CTGAAG	4 cut(s)	306, 636, 1049, 1333
AfaI	GTAC	8 cut(s)	312, 1057, 1254, 1279, 1623, 1789, 2027, 2174
AfiI	CCNNNNNNNGG	3 cut(s)	1598, 1599, 1944
AflIII	ACRYGT	1 cut(s)	1274
AgeI	ACCGGT	1 cut(s)	1694
AhlI	ACTAGT	2 cut(s)	830, 1052
AjnI	CCWGG	4 cut(s)	979, 1261, 1333, 1572
AjuI	GAANNNNNNNTTGG	2 cut(s)	1192, 1224
Alw21I	GWGCWC	2 cut(s)	412, 874
Alw26I	GTCTC	3 cut(s)	717, 792, 1132
Alw44I	GTGCAC	1 cut(s)	408
AlwI	GGATC	5 cut(s)	636, 1141, 1154, 1785, 1888
AlwNI	CAGNNNCTG	1 cut(s)	659
Ama87I	CYCGRG	2 cut(s)	714, 1857
Aor13HI	TCCGGA	1 cut(s)	1512
AoxI	GGCC	5 cut(s)	338, 446, 1216, 1259, 1313
ApaLI	GTGCAC	1 cut(s)	408
ApeKI	GCWGC	7 cut(s)	98, 176, 191, 281, 512, 1948, 2129
ApoI	RAATTY	7 cut(s)	917, 929, 941, 984, 1355, 1419, 1580
AseI	ATTAAT	1 cut(s)	1014
AsiGI	ACCGGT	1 cut(s)	1694
Asp700I	GAANNNNTTC	2 cut(s)	929, 1342
AspLEI	GCGC	2 cut(s)	1123, 1743
AspS9I	GGNCC	2 cut(s)	1570, 1766
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	7 cut(s)	1127, 1553, 1684, 1795, 1820, 1927, 1986
AsuII	TTCGAA	2 cut(s)	244, 765
AvaI	CYCGRG	2 cut(s)	714, 1857
AvaII	GGWCC	2 cut(s)	1570, 1766
BaeGI	GKGCMC	1 cut(s)	412
BaeI	ACNNNNGTAYC	2 cut(s)	1779, 1812
BalI	TGGCCA	1 cut(s)	340
BamHI	GGATCC	1 cut(s)	1146
BanII	GRGCYC	1 cut(s)	874
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
BbsI	GAAGAC	3 cut(s)	45, 555, 1834
Bbv12I	GWGCWC	2 cut(s)	412, 874
BbvI	GCAGC	7 cut(s)	110, 163, 203, 268, 499, 1935, 2116
BccI	CCATC	8 cut(s)	467, 775, 1157, 1284, 1561, 1644, 1768, 2003
BceAI	ACGGC	2 cut(s)	1444, 1961
BciT130I	CCWGG	4 cut(s)	981, 1263, 1335, 1574
BciVI	GTATCC	1 cut(s)	2177
BclI	TGATCA	1 cut(s)	2070
BcnI	CCSGG	1 cut(s)	392
BcoDI	GTCTC	3 cut(s)	717, 792, 1132
BcuI	ACTAGT	2 cut(s)	830, 1052
BfaI	CTAG	7 cut(s)	581, 831, 1053, 1302, 1556, 1736, 1979
BfmI	CTRYAG	1 cut(s)	892
BfoI	RGCGCY	1 cut(s)	1744
BfuI	GTATCC	1 cut(s)	2177
BisI	GCNGC	7 cut(s)	99, 177, 192, 282, 513, 1949, 2130
BlsI	GCNGC	7 cut(s)	100, 178, 193, 283, 514, 1950, 2131
BmcAI	AGTACT	2 cut(s)	1254, 2174
Bme1390I	CCNGG	5 cut(s)	392, 981, 1263, 1335, 1574
Bme18I	GGWCC	2 cut(s)	1570, 1766
BmeT110I	CYCGRG	2 cut(s)	714, 1857
BmgT120I	GGNCC	2 cut(s)	1570, 1766
BmiI	GGNNCC	5 cut(s)	1148, 1268, 1332, 1699, 1733
BmrFI	CCNGG	5 cut(s)	392, 981, 1263, 1335, 1574
BmsI	GCATC	1 cut(s)	1519
BpiI	GAAGAC	3 cut(s)	45, 555, 1834
BplI	GAGNNNNNCTC	2 cut(s)	890, 922
Bpu10I	CCTNAGC	1 cut(s)	660
Bpu14I	TTCGAA	2 cut(s)	244, 765
BpuEI	CTTGAG	3 cut(s)	366, 831, 1888
BpuMI	CCSGG	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	1277
BsaJI	CCNNGG	2 cut(s)	180, 1262
BsaWI	WCCGGW	3 cut(s)	1512, 1563, 1694
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	3 cut(s)	1598, 1599, 1944
Bse118I	RCCGGY	2 cut(s)	441, 1694
Bse1I	ACTGG	2 cut(s)	1503, 1997
Bse3DI	GCAATG	2 cut(s)	495, 1302
BseAI	TCCGGA	1 cut(s)	1512
BseBI	CCWGG	4 cut(s)	981, 1263, 1335, 1574
BseDI	CCNNGG	2 cut(s)	180, 1262
BseGI	GGATG	5 cut(s)	1168, 1295, 1572, 1659, 2014
BseLI	CCNNNNNNNGG	3 cut(s)	1598, 1599, 1944
BseMI	GCAATG	2 cut(s)	495, 1302
BseMII	CTCAG	4 cut(s)	585, 651, 1133, 1601
BseNI	ACTGG	2 cut(s)	1503, 1997
BseRI	GAGGAG	3 cut(s)	834, 1655, 1801
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	7 cut(s)	110, 163, 203, 268, 499, 1935, 2116
BshFI	GGCC	5 cut(s)	340, 448, 1218, 1261, 1315
BshTI	ACCGGT	1 cut(s)	1694
BsiHKAI	GWGCWC	2 cut(s)	412, 874
BsiHKCI	CYCGRG	2 cut(s)	714, 1857
BsiSI	CCGG	5 cut(s)	392, 442, 1513, 1564, 1695
BslFI	GGGAC	3 cut(s)	374, 798, 1063
BslI	CCNNNNNNNGG	3 cut(s)	1598, 1599, 1944
BsmAI	GTCTC	3 cut(s)	717, 792, 1132
BsmFI	GGGAC	3 cut(s)	374, 798, 1063
BsmI	GAATGC	2 cut(s)	1047, 1413
BsnI	GGCC	5 cut(s)	340, 448, 1218, 1261, 1315
BsoBI	CYCGRG	2 cut(s)	714, 1857
Bsp119I	TTCGAA	2 cut(s)	244, 765
Bsp1286I	GDGCHC	2 cut(s)	412, 874
Bsp13I	TCCGGA	1 cut(s)	1512
Bsp1407I	TGTACA	1 cut(s)	2025
Bsp143I	GATC	7 cut(s)	361, 432, 628, 1146, 1777, 1893, 2070
Bsp19I	CCATGG	1 cut(s)	180
BspANI	GGCC	5 cut(s)	340, 448, 1218, 1261, 1315
BspCNI	CTCAG	4 cut(s)	586, 652, 1134, 1600
BspEI	TCCGGA	1 cut(s)	1512
BspLI	GGNNCC	5 cut(s)	1148, 1268, 1332, 1699, 1733
BspPI	GGATC	5 cut(s)	636, 1141, 1154, 1785, 1888
BspQI	GCTCTTC	1 cut(s)	282
BspT104I	TTCGAA	2 cut(s)	244, 765
BsrDI	GCAATG	2 cut(s)	495, 1302
BsrFI	RCCGGY	2 cut(s)	441, 1694
BsrGI	TGTACA	1 cut(s)	2025
BsrI	ACTGG	2 cut(s)	1503, 1997
BssAI	RCCGGY	2 cut(s)	441, 1694
BssECI	CCNNGG	2 cut(s)	180, 1262
BssMI	GATC	7 cut(s)	361, 432, 628, 1146, 1777, 1893, 2070
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	4 cut(s)	981, 1263, 1335, 1574
Bst4CI	ACNGT	7 cut(s)	557, 751, 896, 1406, 1552, 1939, 2177
Bst6I	CTCTTC	4 cut(s)	282, 790, 999, 1930
BstAUI	TGTACA	1 cut(s)	2025
BstBAI	YACGTR	1 cut(s)	1277
BstBI	TTCGAA	2 cut(s)	244, 765
BstC8I	GCNNGC	2 cut(s)	578, 1486
BstDEI	CTNAG	6 cut(s)	594, 660, 774, 1142, 1587, 2207
BstDSI	CCRYGG	1 cut(s)	180
BstEII	GGTNACC	1 cut(s)	1690
BstF5I	GGATG	5 cut(s)	1168, 1295, 1572, 1659, 2014
BstH2I	RGCGCY	1 cut(s)	1744
BstHHI	GCGC	2 cut(s)	1123, 1743
BstKTI	GATC	7 cut(s)	364, 435, 631, 1149, 1780, 1896, 2073
BstMAI	GTCTC	3 cut(s)	717, 792, 1132
BstMBI	GATC	7 cut(s)	361, 432, 628, 1146, 1777, 1893, 2070
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 956, 1481, 2100
BstNI	CCWGG	4 cut(s)	981, 1263, 1335, 1574
BstNSI	RCATGY	1 cut(s)	1972
BstPI	GGTNACC	1 cut(s)	1690
BstSCI	CCNGG	5 cut(s)	390, 979, 1261, 1333, 1572
BstSFI	CTRYAG	1 cut(s)	892
BstSLI	GKGCMC	1 cut(s)	412
BstV1I	GCAGC	7 cut(s)	110, 163, 203, 268, 499, 1935, 2116
BstV2I	GAAGAC	3 cut(s)	45, 555, 1834
BstX2I	RGATCY	1 cut(s)	1146
BstYI	RGATCY	1 cut(s)	1146
BsuI	GTATCC	1 cut(s)	2177
BsuRI	GGCC	5 cut(s)	340, 448, 1218, 1261, 1315
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	5 cut(s)	1168, 1295, 1572, 1659, 2014
BtsI	GCAGTG	2 cut(s)	1911, 2187
BtsIMutI	CAGTG	7 cut(s)	121, 428, 660, 756, 901, 1911, 2187
Cac8I	GCNNGC	2 cut(s)	578, 1486
CaiI	CAGNNNCTG	1 cut(s)	659
CfoI	GCGC	2 cut(s)	1123, 1743
Cfr10I	RCCGGY	2 cut(s)	441, 1694
Cfr13I	GGNCC	2 cut(s)	1570, 1766
CsiI	ACCWGGT	1 cut(s)	1572
Csp6I	GTAC	8 cut(s)	311, 1056, 1253, 1278, 1622, 1788, 2026, 2173
CspAI	ACCGGT	1 cut(s)	1694
CviAII	CATG	5 cut(s)	181, 328, 1674, 1969, 2035
CviQI	GTAC	8 cut(s)	311, 1056, 1253, 1278, 1622, 1788, 2026, 2173
DdeI	CTNAG	6 cut(s)	594, 660, 774, 1142, 1587, 2207
DpnI	GATC	7 cut(s)	363, 434, 630, 1148, 1779, 1895, 2072
DpnII	GATC	7 cut(s)	361, 432, 628, 1146, 1777, 1893, 2070
EaeI	YGGCCR	1 cut(s)	338
Eam1104I	CTCTTC	4 cut(s)	282, 790, 999, 1930
EarI	CTCTTC	4 cut(s)	282, 790, 999, 1930
Ecl136II	GAGCTC	1 cut(s)	872
Eco130I	CCWWGG	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	1218
Eco24I	GRGCYC	1 cut(s)	874
Eco32I	GATATC	2 cut(s)	112, 648
Eco47I	GGWCC	2 cut(s)	1570, 1766
Eco53kI	GAGCTC	1 cut(s)	872
Eco57I	CTGAAG	4 cut(s)	306, 636, 1049, 1333
Eco88I	CYCGRG	2 cut(s)	714, 1857
Eco91I	GGTNACC	1 cut(s)	1690
EcoICRI	GAGCTC	1 cut(s)	872
EcoO65I	GGTNACC	1 cut(s)	1690
EcoRI	GAATTC	3 cut(s)	917, 929, 1580
EcoRII	CCWGG	4 cut(s)	979, 1261, 1333, 1572
EcoRV	GATATC	2 cut(s)	112, 648
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	874
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	5 cut(s)	184, 331, 1677, 1972, 2038
FaqI	GGGAC	3 cut(s)	374, 798, 1063
FatI	CATG	5 cut(s)	180, 327, 1673, 1968, 2034
FbaI	TGATCA	1 cut(s)	2070
FblI	GTMKAC	2 cut(s)	902, 1710
Fnu4HI	GCNGC	7 cut(s)	99, 177, 192, 282, 513, 1949, 2130
FokI	GGATG	5 cut(s)	1175, 1302, 1579, 1666, 2021
FriOI	GRGCYC	1 cut(s)	874
Fsp4HI	GCNGC	7 cut(s)	99, 177, 192, 282, 513, 1949, 2130
FspBI	CTAG	7 cut(s)	581, 831, 1053, 1302, 1556, 1736, 1979
GlaI	GCGC	2 cut(s)	1122, 1742
GluI	GCNGC	7 cut(s)	99, 177, 192, 282, 513, 1949, 2130
HaeII	RGCGCY	1 cut(s)	1744
HaeIII	GGCC	5 cut(s)	340, 448, 1218, 1261, 1315
HapII	CCGG	5 cut(s)	392, 442, 1513, 1564, 1695
HhaI	GCGC	2 cut(s)	1123, 1743
Hin1II	CATG	5 cut(s)	184, 331, 1677, 1972, 2038
Hin6I	GCGC	2 cut(s)	1121, 1741
HinP1I	GCGC	2 cut(s)	1121, 1741
HindIII	AAGCTT	3 cut(s)	199, 695, 2224
HinfI	GANTC	5 cut(s)	800, 879, 899, 2015, 2052
HpaII	CCGG	5 cut(s)	392, 442, 1513, 1564, 1695
HphI	GGTGA	7 cut(s)	1127, 1553, 1684, 1795, 1820, 1927, 1986
Hpy166II	GTNNAC	9 cut(s)	227, 410, 836, 903, 1711, 1803, 1984, 1994, 2028
Hpy188I	TCNGA	6 cut(s)	253, 595, 645, 1137, 1213, 1782
Hpy8I	GTNNAC	9 cut(s)	227, 410, 836, 903, 1711, 1803, 1984, 1994, 2028
Hpy99I	CGWCG	1 cut(s)	557
HpyCH4III	ACNGT	7 cut(s)	557, 751, 896, 1406, 1552, 1939, 2177
HpyCH4IV	ACGT	3 cut(s)	126, 1276, 1523
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 956, 1481, 2100
HpyF3I	CTNAG	6 cut(s)	594, 660, 774, 1142, 1587, 2207
HpySE526I	ACGT	3 cut(s)	126, 1276, 1523
Hsp92II	CATG	5 cut(s)	184, 331, 1677, 1972, 2038
HspAI	GCGC	2 cut(s)	1121, 1741
Kpn2I	TCCGGA	1 cut(s)	1512
Ksp22I	TGATCA	1 cut(s)	2070
Kzo9I	GATC	7 cut(s)	361, 432, 628, 1146, 1777, 1893, 2070
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	3 cut(s)	131, 847, 869
Lsp1109I	GCAGC	7 cut(s)	110, 163, 203, 268, 499, 1935, 2116
LweI	GCATC	1 cut(s)	1519
MabI	ACCWGGT	1 cut(s)	1572
MaeI	CTAG	7 cut(s)	581, 831, 1053, 1302, 1556, 1736, 1979
MaeII	ACGT	3 cut(s)	126, 1276, 1523
MaeIII	GTNAC	5 cut(s)	118, 851, 1630, 1690, 1960
MalI	GATC	7 cut(s)	363, 434, 630, 1148, 1779, 1895, 2072
MboI	GATC	7 cut(s)	361, 432, 628, 1146, 1777, 1893, 2070
MfeI	CAATTG	1 cut(s)	1124
MflI	RGATCY	1 cut(s)	1146
MhlI	GDGCHC	2 cut(s)	412, 874
MlsI	TGGCCA	1 cut(s)	340
MluNI	TGGCCA	1 cut(s)	340
MlyI	GAGTC	2 cut(s)	794, 908
MmeI	TCCRAC	2 cut(s)	109, 240
Mox20I	TGGCCA	1 cut(s)	340
MroI	TCCGGA	1 cut(s)	1512
MroXI	GAANNNNTTC	2 cut(s)	929, 1342
MscI	TGGCCA	1 cut(s)	340
MslI	CAYNNNNRTG	4 cut(s)	520, 860, 1973, 2033
Msp20I	TGGCCA	1 cut(s)	340
MspA1I	CMGCKG	2 cut(s)	194, 2129
MspI	CCGG	5 cut(s)	392, 442, 1513, 1564, 1695
MspR9I	CCNGG	5 cut(s)	392, 981, 1263, 1335, 1574
MunI	CAATTG	1 cut(s)	1124
Mva1269I	GAATGC	2 cut(s)	1047, 1413
MvaI	CCWGG	4 cut(s)	981, 1263, 1335, 1574
MwoI	GCNNNNNNNGC	4 cut(s)	278, 956, 1481, 2100
NciI	CCSGG	1 cut(s)	392
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	7 cut(s)	361, 432, 628, 1146, 1777, 1893, 2070
NlaIII	CATG	5 cut(s)	184, 331, 1677, 1972, 2038
NlaIV	GGNNCC	5 cut(s)	1148, 1268, 1332, 1699, 1733
NmeAIII	GCCGAG	1 cut(s)	782
NmuCI	GTSAC	2 cut(s)	118, 1690
NspI	RCATGY	1 cut(s)	1972
NspV	TTCGAA	2 cut(s)	244, 765
PaeR7I	CTCGAG	1 cut(s)	1857
PceI	AGGCCT	1 cut(s)	1218
PciSI	GCTCTTC	1 cut(s)	282
PctI	GAATGC	2 cut(s)	1047, 1413
PdmI	GAANNNNTTC	2 cut(s)	929, 1342
PfeI	GAWTC	3 cut(s)	879, 2015, 2052
PfoI	TCCNGGA	1 cut(s)	1333
PinAI	ACCGGT	1 cut(s)	1694
PkrI	GCNGC	7 cut(s)	100, 178, 193, 283, 514, 1950, 2131
PleI	GAGTC	2 cut(s)	794, 907
PpsI	GAGTC	2 cut(s)	794, 907
Ppu21I	YACGTR	1 cut(s)	1277
PshBI	ATTAAT	1 cut(s)	1014
PsiI	TTATAA	1 cut(s)	419
Psp124BI	GAGCTC	1 cut(s)	874
Psp1406I	AACGTT	1 cut(s)	126
Psp6I	CCWGG	4 cut(s)	979, 1261, 1333, 1572
PspEI	GGTNACC	1 cut(s)	1690
PspGI	CCWGG	4 cut(s)	979, 1261, 1333, 1572
PspN4I	GGNNCC	5 cut(s)	1148, 1268, 1332, 1699, 1733
PspPI	GGNCC	2 cut(s)	1570, 1766
PspXI	VCTCGAGB	1 cut(s)	1857
PstNI	CAGNNNCTG	1 cut(s)	659
PsuI	RGATCY	1 cut(s)	1146
PvuII	CAGCTG	2 cut(s)	194, 2129
RsaI	GTAC	8 cut(s)	312, 1057, 1254, 1279, 1623, 1789, 2027, 2174
RsaNI	GTAC	8 cut(s)	311, 1056, 1253, 1278, 1622, 1788, 2026, 2173
RseI	CAYNNNNRTG	4 cut(s)	520, 860, 1973, 2033
SacI	GAGCTC	1 cut(s)	874
SapI	GCTCTTC	1 cut(s)	282
SatI	GCNGC	7 cut(s)	99, 177, 192, 282, 513, 1949, 2130
Sau3AI	GATC	7 cut(s)	361, 432, 628, 1146, 1777, 1893, 2070
Sau96I	GGNCC	2 cut(s)	1570, 1766
ScaI	AGTACT	2 cut(s)	1254, 2174
SchI	GAGTC	2 cut(s)	794, 908
ScrFI	CCNGG	5 cut(s)	392, 981, 1263, 1335, 1574
SduI	GDGCHC	2 cut(s)	412, 874
SexAI	ACCWGGT	1 cut(s)	1572
SfaNI	GCATC	1 cut(s)	1519
SfcI	CTRYAG	1 cut(s)	892
Sfr274I	CTCGAG	1 cut(s)	1857
SfuI	TTCGAA	2 cut(s)	244, 765
SinI	GGWCC	2 cut(s)	1570, 1766
SlaI	CTCGAG	1 cut(s)	1857
SmiMI	CAYNNNNRTG	4 cut(s)	520, 860, 1973, 2033
SmlI	CTYRAG	4 cut(s)	381, 846, 1857, 1903
SmoI	CTYRAG	4 cut(s)	381, 846, 1857, 1903
SpeI	ACTAGT	2 cut(s)	830, 1052
SseBI	AGGCCT	1 cut(s)	1218
SspI	AATATT	1 cut(s)	1324
SspMI	CTAG	7 cut(s)	581, 831, 1053, 1302, 1556, 1736, 1979
SstI	GAGCTC	1 cut(s)	874
StuI	AGGCCT	1 cut(s)	1218
StyD4I	CCNGG	5 cut(s)	390, 979, 1261, 1333, 1572
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	7 cut(s)	557, 751, 896, 1406, 1552, 1939, 2177
TaiI	ACGT	3 cut(s)	129, 1279, 1526
TaqI	TCGA	6 cut(s)	244, 435, 765, 997, 1858, 2081
TatI	WGTACW	4 cut(s)	310, 1252, 2025, 2172
TfiI	GAWTC	3 cut(s)	879, 2015, 2052
TscAI	CASTG	7 cut(s)	121, 435, 660, 756, 901, 1918, 2194
TseFI	GTSAC	2 cut(s)	118, 1690
TseI	GCWGC	7 cut(s)	98, 176, 191, 281, 512, 1948, 2129
Tsp45I	GTSAC	2 cut(s)	118, 1690
TspDTI	ATGAA	8 cut(s)	64, 227, 311, 390, 503, 1187, 2007, 2051
TspGWI	ACGGA	1 cut(s)	1979
TspRI	CASTG	7 cut(s)	121, 435, 660, 756, 901, 1918, 2194
VneI	GTGCAC	1 cut(s)	408
VpaK11BI	GGWCC	2 cut(s)	1570, 1766
VspI	ATTAAT	1 cut(s)	1014
XapI	RAATTY	7 cut(s)	917, 929, 941, 984, 1355, 1419, 1580
XceI	RCATGY	1 cut(s)	1972
XhoI	CTCGAG	1 cut(s)	1857
XmiI	GTMKAC	2 cut(s)	902, 1710
XmnI	GAANNNNTTC	2 cut(s)	929, 1342
XspI	CTAG	7 cut(s)	581, 831, 1053, 1302, 1556, 1736, 1979
ZrmI	AGTACT	2 cut(s)	1254, 2174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.