Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Reverse (-)

6760301 .. 6760851

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG086400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAGAACCAACTCAAAAGTTGGTTTGGATATGGACTCGTTTGTCGTCAAGTTCGTGCAGAATGTTCTTAAATTCAGGCCAGAGAACATCATCAAAGTGGGTAGTAAATACAACTATGTGGAGGAATTCAAACACAAAAGAATATCTGCTGCCTTTCTTGAATTCCCATATGCGAAAATATTCGTGAACCGGTACTGTGAGGGATATACTATATTTCAGAAAGGCTCTCCAATTGCCCAAGATTTCACCAAGGCCATTCTAGAGTTATTGGAGGATGGAGAACTGAAGTTACTTGAAGGTACTTGGTTGACAACGAAACATGACTGTCCAAGCAATGCAACTTCCGATGTTCCAGAAAGCTTGAACGTCAAGAATTTTATGGGCCTTTAT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

130

Amino Acids

14.96

Weight (kDa)

7.72

Isoelectric Point (pI)

27.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AcsI	RAATTY	4 cut(s)	71, 125, 161, 373
AcuI	CTGAAG	1 cut(s)	305
AfaI	GTAC	2 cut(s)	194, 301
AgeI	ACCGGT	1 cut(s)	189
AgsI	TTSAA	4 cut(s)	130, 161, 296, 364
AluBI	AGCT	1 cut(s)	360
AluI	AGCT	1 cut(s)	360
AoxI	GGCC	3 cut(s)	77, 252, 382
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	4 cut(s)	71, 125, 161, 373
AsiGI	ACCGGT	1 cut(s)	189
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	249
BsaWI	WCCGGW	1 cut(s)	189
Bse118I	RCCGGY	1 cut(s)	189
Bse3DI	GCAATG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	280
BseMI	GCAATG	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	136
BsgI	GTGCAG	1 cut(s)	77
BshFI	GGCC	3 cut(s)	79, 254, 384
BshTI	ACCGGT	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	190
BsnI	GGCC	3 cut(s)	79, 254, 384
BspANI	GGCC	3 cut(s)	79, 254, 384
BsrDI	GCAATG	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	189
BssAI	RCCGGY	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	197, 326
BstF5I	GGATG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	79, 254, 384
BtsCI	GGATG	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	193, 300
CspAI	ACCGGT	1 cut(s)	189
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	5 cut(s)	79, 225, 254, 360, 384
CviKI_1	RGCY	5 cut(s)	79, 225, 254, 360, 384
CviQI	GTAC	2 cut(s)	193, 300
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	305
EcoRI	GAATTC	2 cut(s)	125, 161
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	1 cut(s)	323
FaiI	YATR	8 cut(s)	32, 117, 169, 171, 207, 212, 321, 380
FatI	CATG	1 cut(s)	319
FauNDI	CATATG	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	79, 254, 384
HapII	CCGG	1 cut(s)	190
Hin1II	CATG	1 cut(s)	323
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	187, 309
Hpy188I	TCNGA	2 cut(s)	219, 346
Hpy188III	TCNNGA	5 cut(s)	158, 184, 260, 353, 370
Hpy8I	GTNNAC	2 cut(s)	187, 309
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	2 cut(s)	197, 326
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	2 cut(s)	58, 338
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	1 cut(s)	323
LpnPI	CCDG	4 cut(s)	61, 93, 203, 366
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	288
MfeI	CAATTG	1 cut(s)	231
MluCI	AATT	5 cut(s)	71, 125, 161, 231, 373
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	3 cut(s)	115, 193, 265
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	95
MspI	CCGG	1 cut(s)	190
MunI	CAATTG	1 cut(s)	231
NdeI	CATATG	1 cut(s)	169
NlaIII	CATG	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	179
PinAI	ACCGGT	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	382
PsrI	GAACNNNNNNTAC	2 cut(s)	273, 305
RsaI	GTAC	2 cut(s)	194, 301
RsaNI	GTAC	2 cut(s)	193, 300
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	150
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	29
SetI	ASST	3 cut(s)	301, 362, 369
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	5 cut(s)	71, 125, 161, 231, 373
SspI	AATATT	1 cut(s)	180
SspMI	CTAG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	197, 326
TaiI	ACGT	1 cut(s)	369
TasI	AATT	5 cut(s)	71, 125, 161, 231, 373
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseI	GCWGC	1 cut(s)	149
XapI	RAATTY	4 cut(s)	71, 125, 161, 373
XbaI	TCTAGA	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.