Rh5AG079000

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
6779648 .. 6781436
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG079000.1

Sequence Viewer

Length: 531 bp
ATGCTCGCCCTTTCAGCTTCTCTGGTAGAACTAGTCTATAACAAGATATTTCAGAAAGGCTCTCCAATTGCCCAAGATTTCACCAAGGCCATTCTAGAGTTATTGGAGGATGGAGAACTGAAGTTACTTGAAGGTACTTGGTTGACAACGAAACATGACTGTCCAAGCAATGCAACTTCCGATGTTCCAGAAAGCTTGAACGTCAAGAATTTTATGGGCCTTTATGTAACATCCACATCTACTTCCACCATTTGCCTTCTATTATCCTTCACTATCATGCTGAATAAGTTTCAACAACACCAAAATGCGTACCACGGCAATGCAAGTGATGTAAGTGTTTGGAACAGAACATTTATTATAACAATATTCCTATATAATAGCGAGTTCAATATTCCAAGCAAAGCTCCAAGTTTTGTTGATGTGCTGGAATTAACTTCTTCCCAAGGGGAGCAGGTGATCACTTCCACCCCTCGGGAGCATCAACTTCAGGCCTCCACCCCCGCACAAACTGAAGGCAATCCGCCACATTAA

Protein Analysis

176

Amino Acids

19.49

Weight (kDa)

5.09

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 359
AarI CACCTGC 1 cut(s) 442
Acc36I ACCTGC 1 cut(s) 442
AciI CCGC 2 cut(s) 501, 521
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 3 cut(s) 140, 470, 531
AfaI GTAC 2 cut(s) 136, 311
AfiI CCNNNNNNNGG 1 cut(s) 471
AgsI TTSAA 4 cut(s) 131, 199, 293, 388
AhlI ACTAGT 1 cut(s) 31
AluBI AGCT 3 cut(s) 17, 195, 404
AluI AGCT 3 cut(s) 17, 195, 404
Ama87I CYCGRG 1 cut(s) 471
AoxI GGCC 3 cut(s) 87, 217, 489
ApoI RAATTY 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 217
AsuHPI GGTGA 2 cut(s) 73, 466
AvaI CYCGRG 1 cut(s) 471
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 331
BclI TGATCA 1 cut(s) 456
BcuI ACTAGT 1 cut(s) 31
BfaI CTAG 2 cut(s) 32, 95
BfuAI ACCTGC 1 cut(s) 442
BmeT110I CYCGRG 1 cut(s) 471
BmgT120I GGNCC 1 cut(s) 217
BmsI GCATC 1 cut(s) 487
BsaJI CCNNGG 4 cut(s) 84, 313, 442, 470
Bsc4I CCNNNNNNNGG 1 cut(s) 471
Bse3DI GCAATG 2 cut(s) 175, 325
BseDI CCNNGG 4 cut(s) 84, 313, 442, 470
BseGI GGATG 2 cut(s) 115, 230
BseLI CCNNNNNNNGG 1 cut(s) 471
BseMI GCAATG 2 cut(s) 175, 325
BshFI GGCC 3 cut(s) 89, 219, 491
BsiHKCI CYCGRG 1 cut(s) 471
BslI CCNNNNNNNGG 1 cut(s) 471
BsnI GGCC 3 cut(s) 89, 219, 491
BsoBI CYCGRG 1 cut(s) 471
Bsp143I GATC 1 cut(s) 456
BspACI CCGC 2 cut(s) 501, 521
BspANI GGCC 3 cut(s) 89, 219, 491
BspMI ACCTGC 1 cut(s) 442
BsrDI GCAATG 2 cut(s) 175, 325
BssECI CCNNGG 4 cut(s) 84, 313, 442, 470
BssMI GATC 1 cut(s) 456
BssT1I CCWWGG 2 cut(s) 84, 442
Bst4CI ACNGT 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 2 cut(s) 115, 230
BstKTI GATC 1 cut(s) 459
BstMBI GATC 1 cut(s) 456
BstMWI GCNNNNNNNGC 1 cut(s) 14
BsuRI GGCC 3 cut(s) 89, 219, 491
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 2 cut(s) 115, 230
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 135, 310
CviAII CATG 2 cut(s) 155, 277
CviJI RGCY 7 cut(s) 17, 60, 89, 195, 219, 404, 491
CviKI_1 RGCY 7 cut(s) 17, 60, 89, 195, 219, 404, 491
CviQI GTAC 2 cut(s) 135, 310
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
EciI GGCGGA 1 cut(s) 510
Eco130I CCWWGG 2 cut(s) 84, 442
Eco147I AGGCCT 1 cut(s) 491
Eco57I CTGAAG 3 cut(s) 140, 470, 531
Eco88I CYCGRG 1 cut(s) 471
EcoT14I CCWWGG 2 cut(s) 84, 442
ErhI CCWWGG 2 cut(s) 84, 442
FaeI CATG 2 cut(s) 158, 280
FaiI YATR 8 cut(s) 39, 156, 215, 225, 278, 359, 373, 375
FatI CATG 2 cut(s) 154, 276
FauI CCCGC 1 cut(s) 508
FbaI TGATCA 1 cut(s) 456
FokI GGATG 2 cut(s) 122, 217
FspBI CTAG 2 cut(s) 32, 95
HaeIII GGCC 3 cut(s) 89, 219, 491
Hin1II CATG 2 cut(s) 158, 280
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 193
HphI GGTGA 2 cut(s) 73, 466
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 2 cut(s) 54, 181
Hpy188III TCNNGA 4 cut(s) 95, 188, 205, 473
Hpy8I GTNNAC 1 cut(s) 144
HpyAV CCTTC 4 cut(s) 125, 266, 277, 506
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 173, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 2 cut(s) 158, 280
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 1 cut(s) 456
LmnI GCTCC 3 cut(s) 409, 448, 475
LpnPI CCDG 5 cut(s) 8, 201, 410, 437, 473
LweI GCATC 1 cut(s) 487
MaeI CTAG 2 cut(s) 32, 95
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 123, 226
MalI GATC 1 cut(s) 458
MboI GATC 1 cut(s) 456
MboII GAAGA 1 cut(s) 429
MfeI CAATTG 1 cut(s) 66
MluCI AATT 3 cut(s) 66, 208, 428
MnlI CCTC 3 cut(s) 100, 480, 502
MseI TTAA 2 cut(s) 431, 529
MslI CAYNNNNRTG 3 cut(s) 275, 303, 318
MunI CAATTG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 1 cut(s) 456
NlaIII CATG 2 cut(s) 158, 280
PaqCI CACCTGC 1 cut(s) 442
PceI AGGCCT 1 cut(s) 491
PsiI TTATAA 1 cut(s) 359
PspPI GGNCC 1 cut(s) 217
PsrI GAACNNNNNNTAC 2 cut(s) 108, 140
RsaI GTAC 2 cut(s) 136, 311
RsaNI GTAC 2 cut(s) 135, 310
RseI CAYNNNNRTG 3 cut(s) 275, 303, 318
SaqAI TTAA 2 cut(s) 431, 529
Sau3AI GATC 1 cut(s) 456
Sau96I GGNCC 1 cut(s) 217
SetI ASST 6 cut(s) 19, 136, 197, 204, 406, 456
SfaNI GCATC 1 cut(s) 487
SmiMI CAYNNNNRTG 3 cut(s) 275, 303, 318
SpeI ACTAGT 1 cut(s) 31
Sse9I AATT 3 cut(s) 66, 208, 428
SseBI AGGCCT 1 cut(s) 491
SsiI CCGC 2 cut(s) 501, 521
SspI AATATT 2 cut(s) 366, 391
SspMI CTAG 2 cut(s) 32, 95
StuI AGGCCT 1 cut(s) 491
StyI CCWWGG 2 cut(s) 84, 442
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 1 cut(s) 204
TasI AATT 3 cut(s) 66, 208, 428
Tru1I TTAA 2 cut(s) 431, 529
Tru9I TTAA 2 cut(s) 431, 529
XapI RAATTY 1 cut(s) 208
XbaI TCTAGA 1 cut(s) 94
XspI CTAG 2 cut(s) 32, 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.