Rh5CG085300

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
6682145 .. 6686072
3928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG085300.1

Sequence Viewer

Length: 2565 bp
ATGCAAGCTAAGGAATCAGAATCAGAATCAGAATCAGAATCAGCTGTCGAACACAACAAGAGAGTTGAAGCTGAAGATGAGAAAAAAATCACTAACATTGGAGCAATCATTGATGTTAATTCCCGTATCGGGAAAGAACAGAAAGCTGCTATGGAAATTGCAGCTGAAAACTTCAACAACCAGTCAGACACTCATGAGCTAATCCTTCATTTTCGAGATTCTGGCCGCGACCCTTTTCTTGCTGCTTATGCTGCTAAACATTTGATAAGGGAACAAAAGGCACAAGTGGTAATTGGCATGGAAACTTGGCAGGAAGCAGTTACAGTAGCTGATGTGGTCAAAAACCTATCTGATCAAATTCCGGTCATTTCCTTTGCAGCACCCACCATATCCCCGCCACTATTACAACGGCGTTGGCCTTCCTTGATACGAATGGCTACCGATGGTGCTGCTCAGATGAAATGCATTGGAGATATAGTTAATGCTTACAACTGGAAAAGGGTTGTTGTAATATATGAAGATGATGGTTATGGTGGTGGTGTGGGGAGGCTAGCTCTTTTATCTGAGACTCTAAGAAATGTTGGTTCTACAATTGAGCTTCGTATAGTTCTCCCACGACTTTCTGAGCCTGATACAAATTGGGATGAAATAAAGAAGCAGCTGTTGGAGCTTTCCAATGTAAACTCTCGGGCATTTATAGTTCTTCAGTCATCTTTACCAACAGTAACTGGTCTATTCAAAGTGGCTAGGAAGATGGGATTTGTAGGAAATGATTCAGCTTGGATAATCACAGAGAGTATTGCTAGTTTGCTTGACCCTCATGGCAACTACGATATGGAAGGAACTCTGGGAATCAAGACCTACTACGCCAATGAGTCTAGTTCTTATGCTGAATTCCACAAGGAATTCCAAGCTAAGTATGCAGAAGAAAATAACTCCAAGCCAGGAATTTATGCTCTTCGAGCATATGATACTATTAATGCCATTTCACAGGCCATGGAAGGAATCCCTAATAACACCACTAGTACTAGCCTTCAGGTTATGATAACTAGATCGTTGAGCAATTACAACGGTTTAAGTGGGAAAATGCAACTAAAAGGAGGTGAGGTACCGCTGGATTCTCCGAGATTCAGGATCATAAATATTGTGGGTGGGAAGACAGATAACGAATTAAACTTTTGGATACCAGACTTTGGATTTTCAGAAAGCCTTGAAAAAGTATCAGACAAATACAGAAGTAATGATGGTGTTGGCAAAGTCATTTGGCCCGGGAACCCAACACTGCCCTCCAAAGGCTGGGCAATGCCCACTGATGAGAAGCCAATGAAAATTTTGCTCCCAGCTTCCCACGAAAATTTTGTAAGGCATATCAGCGGGGAGAACTCAAATCAGATGGGAAAAGAGGGTTTATGTTTAGGAAAGGGAAAAGACGGTTTATGCTCAGGAAAGATATATGACGGTTTGAGTATTGATCTTTTCTGTTGCGTGCTATCTAAATTGAATTATTCCTTGCCACATGAATTTTATAAGGCCAATGGCACTTACAATGATATGGTAGAACAAGTCTATACCAAGACTTACGATGCTGTGATTGGCGATATGACTGTACTTGCATCGCGAATTGACAAAGTGGATTTCACTCAACCATATCTGGAGTCTGGTTTGTCATTGATAGTACCAGATAAATCTAATGAGTCAACATGGCTGTTTATGAAACCTTTCACATGGCAGATGTGGGTGGCTAGTTGTGCCATCTTAATCTACACTATGTTAATAATATGGTTCCTGGAGGGTCCTTCCAGTCCAGAATTTGATGGTCCATTGATGAATCAGATCGCCACAGCTACTTGGTTCTCCTTCTCATCTCTGTTCTTTGCTCACAGAGAGAAAATCTATAGCAATTTGACACGAGTGGTTTTCATAGTGTGGCTGTTTGTTGTATTCATCCTAAACTCAAGCTACACTGCTAATCTGTCTTCGATGCTTACAATTCAACGACTGAGCCCGAATGTAACAGACATTGAAATGTTAAGGACAACCAACTCATTAGTTGGTTGTGATAACGATTCATTTGTAAGGGATTACCTGGAGAATGTTCTTCAATTAAAAAACATCGAGACAGTAGAGAGCAACTTAAAACCCAAAACCTTCAGCAGCAACACGAGATTATCTGCTGTATTTCTTGAACTCCCATATGCAGAAGTTTTCATGAACAATTACTGTAAGGGATTTACCAACACCAAAGCCACCTACAGTTTTGGAGGCTTTAGCTTTGCATTTCAGAAAGGTTCTCCAATAGCGAGGAATTTCTCTATGGTCATCCTAGATCTATTGGAGAACGGAAAAATGAGAGAACTTCAAGATCACTGGTTGAATCCGAGCAAATGTCCAACCAATACAACTTCCGATATGCCAGAAAGCTTGACCATCGAGAGCTTTTGGGGCATCTTTGTAATATCCGGTGCGACTTCCACCCTCTGTCTTCTATCTTCTGCCATCTTGAAAAAGTTTGGACACCAAGAAGCATCCGGAACACGCCCTGAAAATTCCGTACAAGTGCTCTAA

Protein Analysis

854

Amino Acids

95.37

Weight (kDa)

5.4

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 42 - 364 8e-18 Periplasmic binding protein
ANF_receptor PF01094 48 - 383 1.7e-39 Receptor family ligand binding region
SBP_bac_3 PF00497 485 - 792 1.2e-11 Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd PF10613 510 - 560 2.4e-07 Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan PF00060 575 - 822 9.9e-29 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1527
Acc65I GGTACC 1 cut(s) 1108
AccB1I GGYRCC 1 cut(s) 1108
AccB7I CCANNNNNTGG 2 cut(s) 1193, 1296
AccII CGCG 2 cut(s) 228, 1618
AccIII TCCGGA 1 cut(s) 2528
AciI CCGC 4 cut(s) 226, 395, 1112, 1374
AclWI GGATC 1 cut(s) 1142
AcoI YGGCCR 1 cut(s) 223
AcuI CTGAAG 4 cut(s) 93, 689, 1019, 2134
AfaI GTAC 5 cut(s) 1027, 1110, 1608, 1677, 2553
AfiI CCNNNNNNNGG 4 cut(s) 129, 1193, 1292, 1296
AhlI ACTAGT 1 cut(s) 1022
AjnI CCWGG 3 cut(s) 943, 1785, 2085
AjuI GAANNNNNNNTTGG 2 cut(s) 647, 679
Alw21I GWGCWC 1 cut(s) 2562
Alw26I GTCTC 2 cut(s) 560, 2111
AlwI GGATC 1 cut(s) 1142
AlwNI CAGNNNCTG 2 cut(s) 329, 728
Ama87I CYCGRG 2 cut(s) 687, 1268
Aor13HI TCCGGA 1 cut(s) 2528
AoxI GGCC 5 cut(s) 223, 416, 993, 1265, 1530
ApeKI GCWGC 8 cut(s) 146, 161, 242, 251, 377, 449, 658, 2154
AseI ATTAAT 1 cut(s) 978
Asp700I GAANNNNTTC 2 cut(s) 772, 1718
Asp718I GGTACC 1 cut(s) 1108
AspS9I GGNCC 3 cut(s) 1266, 1793, 1817
AsuC2I CCSGG 2 cut(s) 1269, 1270
AsuHPI GGTGA 1 cut(s) 1115
AsuNHI GCTAGC 1 cut(s) 550
AvaI CYCGRG 2 cut(s) 687, 1268
AvaII GGWCC 2 cut(s) 1793, 1817
BanI GGYRCC 1 cut(s) 1108
BanII GRGCYC 1 cut(s) 2006
BauI CACGAG 2 cut(s) 1908, 2161
BbsI GAAGAC 3 cut(s) 1163, 1968, 2474
Bbv12I GWGCWC 1 cut(s) 2562
BbvI GCAGC 8 cut(s) 133, 173, 229, 238, 389, 436, 670, 2166
BccI CCATC 9 cut(s) 437, 518, 748, 1238, 1387, 1760, 1808, 2435, 2504
BceAI ACGGC 1 cut(s) 425
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 3 cut(s) 945, 1787, 2087
BciVI GTATCC 1 cut(s) 1176
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 2 cut(s) 1269, 1270
BcoDI GTCTC 2 cut(s) 560, 2111
BcuI ACTAGT 1 cut(s) 1022
BfaI CTAG 9 cut(s) 551, 747, 804, 879, 1023, 1029, 1050, 1743, 2324
BfmI CTRYAG 2 cut(s) 1894, 2251
BfuI GTATCC 1 cut(s) 1176
BglII AGATCT 1 cut(s) 2326
BisI GCNGC 9 cut(s) 147, 162, 226, 243, 252, 378, 450, 659, 2155
BlsI GCNGC 9 cut(s) 148, 163, 227, 244, 253, 379, 451, 660, 2156
BmcAI AGTACT 1 cut(s) 1027
Bme1390I CCNGG 5 cut(s) 945, 1269, 1270, 1787, 2087
Bme18I GGWCC 2 cut(s) 1793, 1817
BmeT110I CYCGRG 2 cut(s) 687, 1268
BmgT120I GGNCC 3 cut(s) 1266, 1793, 1817
BmiI GGNNCC 4 cut(s) 1110, 1274, 1784, 1794
BmrFI CCNGG 5 cut(s) 945, 1269, 1270, 1787, 2087
BmsI GCATC 5 cut(s) 1573, 1622, 1971, 2454, 2534
BmtI GCTAGC 1 cut(s) 554
BpiI GAAGAC 3 cut(s) 1163, 1968, 2474
BplI GAGNNNNNCTC 2 cut(s) 538, 570
BpmI CTGGAG 3 cut(s) 1673, 1808, 2108
Bpu10I CCTNAGC 2 cut(s) 9, 1441
BpuEI CTTGAG 1 cut(s) 1939
BpuMI CCSGG 2 cut(s) 1269, 1270
BsaJI CCNNGG 2 cut(s) 996, 1268
BsaWI WCCGGW 3 cut(s) 361, 2459, 2528
BsaXI ACNNNNNCTCC 4 cut(s) 462, 492, 1092, 1122
Bsc4I CCNNNNNNNGG 4 cut(s) 129, 1193, 1292, 1296
Bse1I ACTGG 5 cut(s) 181, 497, 733, 1800, 2372
Bse3DI GCAATG 1 cut(s) 1308
BseAI TCCGGA 1 cut(s) 2528
BseBI CCWGG 3 cut(s) 945, 1787, 2087
BseDI CCNNGG 2 cut(s) 996, 1268
BseGI GGATG 4 cut(s) 649, 1944, 2319, 2525
BseLI CCNNNNNNNGG 4 cut(s) 129, 1193, 1292, 1296
BseMI GCAATG 1 cut(s) 1308
BseMII CTCAG 5 cut(s) 467, 555, 615, 1455, 1991
BseNI ACTGG 5 cut(s) 181, 497, 733, 1800, 2372
BseXI GCAGC 8 cut(s) 133, 173, 229, 238, 389, 436, 670, 2166
BseYI CCCAGC 2 cut(s) 1296, 1339
Bsh1236I CGCG 2 cut(s) 228, 1618
BshFI GGCC 5 cut(s) 225, 418, 995, 1267, 1532
BshNI GGYRCC 1 cut(s) 1108
BsiHKAI GWGCWC 1 cut(s) 2562
BsiHKCI CYCGRG 2 cut(s) 687, 1268
BsiSI CCGG 4 cut(s) 362, 1269, 2460, 2529
BslI CCNNNNNNNGG 4 cut(s) 129, 1193, 1292, 1296
BsmAI GTCTC 2 cut(s) 560, 2111
BsnI GGCC 5 cut(s) 225, 418, 995, 1267, 1532
BsoBI CYCGRG 2 cut(s) 687, 1268
Bsp1286I GDGCHC 2 cut(s) 2006, 2562
Bsp13I TCCGGA 1 cut(s) 2528
Bsp143I GATC 7 cut(s) 352, 1052, 1134, 1471, 1833, 2326, 2362
Bsp19I CCATGG 1 cut(s) 996
Bsp68I TCGCGA 1 cut(s) 1618
BspACI CCGC 4 cut(s) 226, 395, 1112, 1374
BspANI GGCC 5 cut(s) 225, 418, 995, 1267, 1532
BspCNI CTCAG 5 cut(s) 466, 556, 616, 1454, 1992
BspEI TCCGGA 1 cut(s) 2528
BspFNI CGCG 2 cut(s) 228, 1618
BspHI TCATGA 2 cut(s) 193, 2208
BspLI GGNNCC 4 cut(s) 1110, 1274, 1784, 1794
BspOI GCTAGC 1 cut(s) 554
BspPI GGATC 1 cut(s) 1142
BspQI GCTCTTC 1 cut(s) 963
BspT107I GGYRCC 1 cut(s) 1108
BsrDI GCAATG 1 cut(s) 1308
BsrI ACTGG 5 cut(s) 181, 497, 733, 1800, 2372
BssECI CCNNGG 2 cut(s) 996, 1268
BssMI GATC 7 cut(s) 352, 1052, 1134, 1471, 1833, 2326, 2362
BssSI CACGAG 2 cut(s) 1908, 2161
BssT1I CCWWGG 1 cut(s) 996
Bst2BI CACGAG 2 cut(s) 1908, 2161
Bst2UI CCWGG 3 cut(s) 945, 1787, 2087
Bst4CI ACNGT 9 cut(s) 325, 724, 1073, 1433, 1460, 1606, 2122, 2222, 2255
Bst6I CTCTTC 1 cut(s) 963
BstC8I GCNNGC 3 cut(s) 6, 552, 1487
BstDEI CTNAG 8 cut(s) 9, 453, 564, 572, 624, 915, 1441, 2000
BstDSI CCRYGG 1 cut(s) 996
BstF5I GGATG 4 cut(s) 649, 1944, 2319, 2525
BstFNI CGCG 2 cut(s) 228, 1618
BstKTI GATC 7 cut(s) 355, 1055, 1137, 1474, 1836, 2329, 2365
BstMAI GTCTC 2 cut(s) 560, 2111
BstMBI GATC 7 cut(s) 352, 1052, 1134, 1471, 1833, 2326, 2362
BstMWI GCNNNNNNNGC 7 cut(s) 248, 251, 667, 920, 962, 1748, 2442
BstNI CCWGG 3 cut(s) 945, 1787, 2087
BstSCI CCNGG 5 cut(s) 943, 1267, 1268, 1785, 2085
BstSFI CTRYAG 2 cut(s) 1894, 2251
BstUI CGCG 2 cut(s) 228, 1618
BstV1I GCAGC 8 cut(s) 133, 173, 229, 238, 389, 436, 670, 2166
BstV2I GAAGAC 3 cut(s) 1163, 1968, 2474
BstX2I RGATCY 1 cut(s) 2326
BstYI RGATCY 1 cut(s) 2326
BsuI GTATCC 1 cut(s) 1176
BsuRI GGCC 5 cut(s) 225, 418, 995, 1267, 1532
BtgI CCRYGG 1 cut(s) 996
BtgZI GCGATG 1 cut(s) 1599
BtsCI GGATG 4 cut(s) 649, 1944, 2319, 2525
BtsI GCAGTG 2 cut(s) 1280, 1962
BtsIMutI CAGTG 4 cut(s) 1280, 1308, 1962, 2365
BtuMI TCGCGA 1 cut(s) 1618
Cac8I GCNNGC 3 cut(s) 6, 552, 1487
CaiI CAGNNNCTG 2 cut(s) 329, 728
CciI TCATGA 2 cut(s) 193, 2208
Cfr13I GGNCC 3 cut(s) 1266, 1793, 1817
Cfr9I CCCGGG 1 cut(s) 1268
Csp6I GTAC 5 cut(s) 1026, 1109, 1607, 1676, 2552
CviAII CATG 8 cut(s) 194, 298, 821, 997, 1517, 1701, 1725, 2209
CviQI GTAC 5 cut(s) 1026, 1109, 1607, 1676, 2552
DdeI CTNAG 8 cut(s) 9, 453, 564, 572, 624, 915, 1441, 2000
DpnI GATC 7 cut(s) 354, 1054, 1136, 1473, 1835, 2328, 2364
DpnII GATC 7 cut(s) 352, 1052, 1134, 1471, 1833, 2326, 2362
EaeI YGGCCR 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 963
EarI CTCTTC 1 cut(s) 963
Eco130I CCWWGG 1 cut(s) 996
Eco24I GRGCYC 1 cut(s) 2006
Eco47I GGWCC 2 cut(s) 1793, 1817
Eco57I CTGAAG 4 cut(s) 93, 689, 1019, 2134
Eco88I CYCGRG 2 cut(s) 687, 1268
EcoO109I RGGNCCY 1 cut(s) 1793
EcoRI GAATTC 2 cut(s) 893, 905
EcoRII CCWGG 3 cut(s) 943, 1785, 2085
EcoT14I CCWWGG 1 cut(s) 996
EcoT22I ATGCAT 1 cut(s) 467
EcoT38I GRGCYC 1 cut(s) 2006
ErhI CCWWGG 1 cut(s) 996
FaeI CATG 8 cut(s) 197, 301, 824, 1000, 1520, 1704, 1728, 2212
FatI CATG 8 cut(s) 193, 297, 820, 996, 1516, 1700, 1724, 2208
FauI CCCGC 2 cut(s) 402, 1367
FauNDI CATATG 2 cut(s) 967, 2194
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 9 cut(s) 147, 162, 226, 243, 252, 378, 450, 659, 2155
FokI GGATG 4 cut(s) 656, 1931, 2306, 2512
FriOI GRGCYC 1 cut(s) 2006
Fsp4HI GCNGC 9 cut(s) 147, 162, 226, 243, 252, 378, 450, 659, 2155
FspBI CTAG 9 cut(s) 551, 747, 804, 879, 1023, 1029, 1050, 1743, 2324
GluI GCNGC 9 cut(s) 147, 162, 226, 243, 252, 378, 450, 659, 2155
GsaI CCCAGC 2 cut(s) 1300, 1343
GsuI CTGGAG 3 cut(s) 1673, 1808, 2108
HaeIII GGCC 5 cut(s) 225, 418, 995, 1267, 1532
HapII CCGG 4 cut(s) 362, 1269, 2460, 2529
Hin1II CATG 8 cut(s) 197, 301, 824, 1000, 1520, 1704, 1728, 2212
HincII GTYRAC 1 cut(s) 1698
HindII GTYRAC 1 cut(s) 1698
HindIII AAGCTT 1 cut(s) 2419
HpaII CCGG 4 cut(s) 362, 1269, 2460, 2529
HphI GGTGA 1 cut(s) 1115
Hpy166II GTNNAC 2 cut(s) 682, 1698
Hpy8I GTNNAC 2 cut(s) 682, 1698
HpyAV CCTTC 8 cut(s) 215, 429, 833, 995, 1043, 1806, 1867, 2158
HpyCH4III ACNGT 9 cut(s) 325, 724, 1073, 1433, 1460, 1606, 2122, 2222, 2255
HpyCH4V TGCA 9 cut(s) 4, 161, 377, 465, 923, 1090, 1613, 2198, 2276
HpyF10VI GCNNNNNNNGC 7 cut(s) 248, 251, 667, 920, 962, 1748, 2442
HpyF3I CTNAG 8 cut(s) 9, 453, 564, 572, 624, 915, 1441, 2000
Hsp92II CATG 8 cut(s) 197, 301, 824, 1000, 1520, 1704, 1728, 2212
Kpn2I TCCGGA 1 cut(s) 2528
KpnI GGTACC 1 cut(s) 1112
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 7 cut(s) 352, 1052, 1134, 1471, 1833, 2326, 2362
LguI GCTCTTC 1 cut(s) 963
LmnI GCTCC 3 cut(s) 101, 667, 1341
Lsp1109I GCAGC 8 cut(s) 133, 173, 229, 238, 389, 436, 670, 2166
LweI GCATC 5 cut(s) 1573, 1622, 1971, 2454, 2534
MaeI CTAG 9 cut(s) 551, 747, 804, 879, 1023, 1029, 1050, 1743, 2324
MaeIII GTNAC 3 cut(s) 319, 724, 2011
MalI GATC 7 cut(s) 354, 1054, 1136, 1473, 1835, 2328, 2364
MboI GATC 7 cut(s) 352, 1052, 1134, 1471, 1833, 2326, 2362
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 1 cut(s) 2326
MhlI GDGCHC 2 cut(s) 2006, 2562
MlyI GAGTC 4 cut(s) 562, 884, 1664, 1703
MmeI TCCRAC 2 cut(s) 645, 2414
Mph1103I ATGCAT 1 cut(s) 467
MroI TCCGGA 1 cut(s) 2528
MroXI GAANNNNTTC 2 cut(s) 772, 1718
MslI CAYNNNNRTG 1 cut(s) 2024
MspA1I CMGCKG 5 cut(s) 44, 164, 661, 1114, 1374
MspI CCGG 4 cut(s) 362, 1269, 2460, 2529
MspR9I CCNGG 5 cut(s) 945, 1269, 1270, 1787, 2087
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 3 cut(s) 945, 1787, 2087
MvnI CGCG 2 cut(s) 228, 1618
MwoI GCNNNNNNNGC 7 cut(s) 248, 251, 667, 920, 962, 1748, 2442
NciI CCSGG 2 cut(s) 1269, 1270
NcoI CCATGG 1 cut(s) 996
NdeI CATATG 2 cut(s) 967, 2194
NdeII GATC 7 cut(s) 352, 1052, 1134, 1471, 1833, 2326, 2362
NheI GCTAGC 1 cut(s) 550
NlaIII CATG 8 cut(s) 197, 301, 824, 1000, 1520, 1704, 1728, 2212
NlaIV GGNNCC 4 cut(s) 1110, 1274, 1784, 1794
NruI TCGCGA 1 cut(s) 1618
NsiI ATGCAT 1 cut(s) 467
PagI TCATGA 2 cut(s) 193, 2208
PciSI GCTCTTC 1 cut(s) 963
PdmI GAANNNNTTC 2 cut(s) 772, 1718
PflMI CCANNNNNTGG 2 cut(s) 1193, 1296
PfoI TCCNGGA 1 cut(s) 1785
PkrI GCNGC 9 cut(s) 148, 163, 227, 244, 253, 379, 451, 660, 2156
PleI GAGTC 4 cut(s) 562, 883, 1663, 1702
PpsI GAGTC 4 cut(s) 562, 883, 1663, 1702
PpuMI RGGWCCY 1 cut(s) 1793
PshBI ATTAAT 1 cut(s) 978
PsiI TTATAA 1 cut(s) 1527
Psp5II RGGWCCY 1 cut(s) 1793
Psp6I CCWGG 3 cut(s) 943, 1785, 2085
PspFI CCCAGC 2 cut(s) 1296, 1339
PspGI CCWGG 3 cut(s) 943, 1785, 2085
PspN4I GGNNCC 4 cut(s) 1110, 1274, 1784, 1794
PspPI GGNCC 3 cut(s) 1266, 1793, 1817
PspPPI RGGWCCY 1 cut(s) 1793
PstNI CAGNNNCTG 2 cut(s) 329, 728
PsuI RGATCY 1 cut(s) 2326
PvuII CAGCTG 3 cut(s) 44, 164, 661
RruI TCGCGA 1 cut(s) 1618
RsaI GTAC 5 cut(s) 1027, 1110, 1608, 1677, 2553
RsaNI GTAC 5 cut(s) 1026, 1109, 1607, 1676, 2552
RseI CAYNNNNRTG 1 cut(s) 2024
SapI GCTCTTC 1 cut(s) 963
SatI GCNGC 9 cut(s) 147, 162, 226, 243, 252, 378, 450, 659, 2155
Sau3AI GATC 7 cut(s) 352, 1052, 1134, 1471, 1833, 2326, 2362
Sau96I GGNCC 3 cut(s) 1266, 1793, 1817
ScaI AGTACT 1 cut(s) 1027
SchI GAGTC 4 cut(s) 562, 884, 1664, 1703
ScrFI CCNGG 5 cut(s) 945, 1269, 1270, 1787, 2087
SduI GDGCHC 2 cut(s) 2006, 2562
SfaNI GCATC 5 cut(s) 1573, 1622, 1971, 2454, 2534
SfcI CTRYAG 2 cut(s) 1894, 2251
SinI GGWCC 2 cut(s) 1793, 1817
SmaI CCCGGG 1 cut(s) 1270
SmiMI CAYNNNNRTG 1 cut(s) 2024
SmlI CTYRAG 1 cut(s) 1954
SmoI CTYRAG 1 cut(s) 1954
SpeI ACTAGT 1 cut(s) 1022
SsiI CCGC 4 cut(s) 226, 395, 1112, 1374
SspI AATATT 1 cut(s) 1144
SspMI CTAG 9 cut(s) 551, 747, 804, 879, 1023, 1029, 1050, 1743, 2324
StyD4I CCNGG 5 cut(s) 943, 1267, 1268, 1785, 2085
StyI CCWWGG 1 cut(s) 996
TaaI ACNGT 9 cut(s) 325, 724, 1073, 1433, 1460, 1606, 2122, 2222, 2255
TaqI TCGA 6 cut(s) 48, 214, 961, 1979, 2115, 2430
TatI WGTACW 2 cut(s) 1025, 1606
TauI GCSGC 1 cut(s) 228
TscAI CASTG 4 cut(s) 1287, 1315, 1969, 2372
TseI GCWGC 8 cut(s) 146, 161, 242, 251, 377, 449, 658, 2154
TspGWI ACGGA 2 cut(s) 2355, 2539
TspMI CCCGGG 1 cut(s) 1268
TspRI CASTG 4 cut(s) 1287, 1315, 1969, 2372
Van91I CCANNNNNTGG 2 cut(s) 1193, 1296
VpaK11BI GGWCC 2 cut(s) 1793, 1817
VspI ATTAAT 1 cut(s) 978
XmaI CCCGGG 1 cut(s) 1268
XmnI GAANNNNTTC 2 cut(s) 772, 1718
XspI CTAG 9 cut(s) 551, 747, 804, 879, 1023, 1029, 1050, 1743, 2324
ZrmI AGTACT 1 cut(s) 1027
Zsp2I ATGCAT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.