Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Forward (+)

60377901 .. 60378971

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0448200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGAGAGTTTCATGCGTGTGTTTTCGACTTTCTTCGTCGCGCTCTTGCTTCTGGTGGCTACAGCTGGGATAGGACCAAATGTAATGGTTGCTGAGGCTAGAACTTGTGAGAGTCAGAGCCTCAAGTACGAGGGAATGTGCTTGAGAGAGAGCCACTGTGCATCTGTTTGCCAAACTGAGGGGTACAGTGGAGGCGACTGCCACGGTCTCTATAGCATATGTGTCTGTACCAAAGATTGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

81

Amino Acids

8.79

Weight (kDa)

5.11

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	34 - 80	4.1e-15	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	41
AfaI	GTAC	3 cut(s)	128, 185, 229
AfiI	CCNNNNNNNGG	1 cut(s)	178
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	74
BbvCI	CCTCAGC	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	2 cut(s)	60, 211
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	74
BmsI	GCATC	1 cut(s)	170
Bpu10I	CCTNAGC	1 cut(s)	93
BpuEI	CTTGAG	2 cut(s)	107, 163
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	84, 168
BseYI	CCCAGC	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	212
Bso31I	GGTCTC	1 cut(s)	212
BspCNI	CTCAG	2 cut(s)	85, 169
BspFNI	CGCG	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	202
Bst4CI	ACNGT	3 cut(s)	158, 188, 206
BstDEI	CTNAG	2 cut(s)	93, 177
BstDSI	CCRYGG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	212
BstSFI	CTRYAG	2 cut(s)	60, 211
BstUI	CGCG	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	154, 193
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	127, 184, 228
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	5 cut(s)	59, 65, 98, 120, 153
CviKI_1	RGCY	5 cut(s)	59, 65, 98, 120, 153
CviQI	GTAC	3 cut(s)	127, 184, 228
DdeI	CTNAG	2 cut(s)	93, 177
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	74
FaeI	CATG	1 cut(s)	16
FaiI	YATR	4 cut(s)	14, 213, 218, 220
FatI	CATG	1 cut(s)	12
FauNDI	CATATG	1 cut(s)	218
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	1 cut(s)	42
GsaI	CCCAGC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	117
Hpy99I	CGWCG	1 cut(s)	41
HpyCH4III	ACNGT	3 cut(s)	158, 188, 206
HpyCH4V	TGCA	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	93, 177
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	1 cut(s)	41
LpnPI	CCDG	2 cut(s)	38, 51
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	99
MboII	GAAGA	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	5 cut(s)	88, 124, 131, 172, 185
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	41
NdeI	CATATG	1 cut(s)	218
NlaIII	CATG	1 cut(s)	16
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	3 cut(s)	128, 185, 229
RsaNI	GTAC	3 cut(s)	127, 184, 228
RseI	CAYNNNNRTG	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	1 cut(s)	121
SetI	ASST	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	170
SfcI	CTRYAG	2 cut(s)	60, 211
SinI	GGWCC	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	122, 142
SmoI	CTYRAG	2 cut(s)	122, 142
SspMI	CTAG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	158, 188, 206
TaqI	TCGA	1 cut(s)	26
TscAI	CASTG	2 cut(s)	161, 193
TspRI	CASTG	2 cut(s)	161, 193
VpaK11BI	GGWCC	1 cut(s)	74
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.