Rh5DG074500

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
6498607 .. 6499463
857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG074500.1

Sequence Viewer

Length: 696 bp
ATGAGAACCAACTCAAAAGTTGGTTTGGATATGGACTCGTTTGTCGTCAAGTTCGTGCAGAATGTTCTTAAATTCAGGCCAGAGAACATCATCAAAGTGGGTAGTAAATACAACTATGTGGAGGAATTCAAACACAAAAGAATATCTGCTGCCTTTCTTGAATTCCCATATGCGAAAATATTCGTGAACCGGTACTGTGAGGGATATACTATATTTCAGAAAGGCTCTCCAATTGCCCAAGATTTCACCAAGGCCATTCTAGAGTTATTGGAGGATGGAGAACTGAAGTTACTTGAAGGTACTTGGTTGACAACGAAACATGACTGTCCAAGCAATGCAACTTCCGATGTTCCAGAAAGCTTGAACGTCAAGAATTTTATGGGCCTTTATGTAACATCCACATCTACTTCGACCATTTGCCTTCTATTATCCTTCACTATCTTGCTGAATAAGTTTCAACAACACCAAAATGCGTACCATGGCAATGCAAGTGATGAATGTGTTTGGAACAGAACATTTATTATAGCAAGATTCCTATATAATAGAGAGTTCAATATTCCAAGCAAAGCTCCAAGTTTTGTTGATGTGCTGGAATTAACTTCTTCCCAAGGGGAGCAGGTGATCACTTCCACCCCTCGGGAGCATCAACTTCAGGCCTCCACCCCCGCACAAACTGAAGGCAATCCGCCACATTAA

Protein Analysis

231

Amino Acids

26.26

Weight (kDa)

6.6

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 607
AasI GACNNNNNNGTC 1 cut(s) 41
Acc36I ACCTGC 1 cut(s) 607
AciI CCGC 2 cut(s) 666, 686
AcsI RAATTY 4 cut(s) 71, 125, 161, 373
AcuI CTGAAG 3 cut(s) 305, 635, 696
AfaI GTAC 3 cut(s) 194, 301, 476
AfiI CCNNNNNNNGG 1 cut(s) 636
AgeI ACCGGT 1 cut(s) 189
AgsI TTSAA 6 cut(s) 130, 161, 296, 364, 458, 553
AluBI AGCT 2 cut(s) 360, 569
AluI AGCT 2 cut(s) 360, 569
Ama87I CYCGRG 1 cut(s) 636
AoxI GGCC 4 cut(s) 77, 252, 382, 654
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 4 cut(s) 71, 125, 161, 373
AsiGI ACCGGT 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 382
AsuHPI GGTGA 2 cut(s) 238, 631
AvaI CYCGRG 1 cut(s) 636
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 269
BclI TGATCA 1 cut(s) 621
BfaI CTAG 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 607
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 636
BmgT120I GGNCC 1 cut(s) 382
BmsI GCATC 1 cut(s) 652
BsaJI CCNNGG 4 cut(s) 249, 478, 607, 635
BsaWI WCCGGW 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 636
Bse118I RCCGGY 1 cut(s) 189
Bse3DI GCAATG 2 cut(s) 340, 490
BseDI CCNNGG 4 cut(s) 249, 478, 607, 635
BseGI GGATG 2 cut(s) 280, 395
BseLI CCNNNNNNNGG 1 cut(s) 636
BseMI GCAATG 2 cut(s) 340, 490
BseXI GCAGC 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 77
BshFI GGCC 4 cut(s) 79, 254, 384, 656
BshTI ACCGGT 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 636
BsiSI CCGG 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 636
BsnI GGCC 4 cut(s) 79, 254, 384, 656
BsoBI CYCGRG 1 cut(s) 636
Bsp143I GATC 1 cut(s) 621
Bsp19I CCATGG 1 cut(s) 478
BspACI CCGC 2 cut(s) 666, 686
BspANI GGCC 4 cut(s) 79, 254, 384, 656
BspMI ACCTGC 1 cut(s) 607
BsrDI GCAATG 2 cut(s) 340, 490
BsrFI RCCGGY 1 cut(s) 189
BssAI RCCGGY 1 cut(s) 189
BssECI CCNNGG 4 cut(s) 249, 478, 607, 635
BssMI GATC 1 cut(s) 621
BssT1I CCWWGG 3 cut(s) 249, 478, 607
Bst4CI ACNGT 2 cut(s) 197, 326
BstDSI CCRYGG 1 cut(s) 478
BstF5I GGATG 2 cut(s) 280, 395
BstKTI GATC 1 cut(s) 624
BstMBI GATC 1 cut(s) 621
BstV1I GCAGC 1 cut(s) 136
BsuRI GGCC 4 cut(s) 79, 254, 384, 656
BtgI CCRYGG 1 cut(s) 478
BtsCI GGATG 2 cut(s) 280, 395
BveI ACCTGC 1 cut(s) 607
Cfr10I RCCGGY 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 382
Csp6I GTAC 3 cut(s) 193, 300, 475
CspAI ACCGGT 1 cut(s) 189
CviAII CATG 2 cut(s) 320, 479
CviJI RGCY 7 cut(s) 79, 225, 254, 360, 384, 569, 656
CviKI_1 RGCY 7 cut(s) 79, 225, 254, 360, 384, 569, 656
CviQI GTAC 3 cut(s) 193, 300, 475
DpnI GATC 1 cut(s) 623
DpnII GATC 1 cut(s) 621
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 675
Eco130I CCWWGG 3 cut(s) 249, 478, 607
Eco147I AGGCCT 1 cut(s) 656
Eco57I CTGAAG 3 cut(s) 305, 635, 696
Eco88I CYCGRG 1 cut(s) 636
EcoRI GAATTC 2 cut(s) 125, 161
EcoT14I CCWWGG 3 cut(s) 249, 478, 607
ErhI CCWWGG 3 cut(s) 249, 478, 607
FaeI CATG 2 cut(s) 323, 482
FatI CATG 2 cut(s) 319, 478
FauI CCCGC 1 cut(s) 673
FauNDI CATATG 1 cut(s) 169
FbaI TGATCA 1 cut(s) 621
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 2 cut(s) 287, 382
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 260
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 4 cut(s) 79, 254, 384, 656
HapII CCGG 1 cut(s) 190
Hin1II CATG 2 cut(s) 323, 482
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HindIII AAGCTT 1 cut(s) 358
HinfI GANTC 2 cut(s) 35, 531
HpaII CCGG 1 cut(s) 190
HphI GGTGA 2 cut(s) 238, 631
Hpy166II GTNNAC 2 cut(s) 187, 309
Hpy188I TCNGA 2 cut(s) 219, 346
Hpy188III TCNNGA 6 cut(s) 158, 184, 260, 353, 370, 638
Hpy8I GTNNAC 2 cut(s) 187, 309
HpyAV CCTTC 4 cut(s) 290, 431, 442, 671
HpyCH4III ACNGT 2 cut(s) 197, 326
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 3 cut(s) 58, 338, 488
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 2 cut(s) 323, 482
Ksp22I TGATCA 1 cut(s) 621
Kzo9I GATC 1 cut(s) 621
LmnI GCTCC 3 cut(s) 574, 613, 640
LpnPI CCDG 7 cut(s) 61, 93, 203, 366, 575, 602, 638
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 652
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 2 cut(s) 288, 391
MalI GATC 1 cut(s) 623
MboI GATC 1 cut(s) 621
MboII GAAGA 1 cut(s) 594
MfeI CAATTG 1 cut(s) 231
MluCI AATT 6 cut(s) 71, 125, 161, 231, 373, 593
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 5 cut(s) 115, 193, 265, 645, 667
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 3 cut(s) 69, 596, 694
MslI CAYNNNNRTG 3 cut(s) 95, 468, 483
MspI CCGG 1 cut(s) 190
MunI CAATTG 1 cut(s) 231
NcoI CCATGG 1 cut(s) 478
NdeI CATATG 1 cut(s) 169
NdeII GATC 1 cut(s) 621
NlaIII CATG 2 cut(s) 323, 482
PaqCI CACCTGC 1 cut(s) 607
PceI AGGCCT 1 cut(s) 656
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 531
PinAI ACCGGT 1 cut(s) 189
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 382
PsrI GAACNNNNNNTAC 2 cut(s) 273, 305
RsaI GTAC 3 cut(s) 194, 301, 476
RsaNI GTAC 3 cut(s) 193, 300, 475
RseI CAYNNNNRTG 3 cut(s) 95, 468, 483
SaqAI TTAA 3 cut(s) 69, 596, 694
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 621
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 1 cut(s) 29
SetI ASST 5 cut(s) 301, 362, 369, 571, 621
SfaNI GCATC 1 cut(s) 652
SmiMI CAYNNNNRTG 3 cut(s) 95, 468, 483
Sse9I AATT 6 cut(s) 71, 125, 161, 231, 373, 593
SseBI AGGCCT 1 cut(s) 656
SsiI CCGC 2 cut(s) 666, 686
SspI AATATT 2 cut(s) 180, 556
SspMI CTAG 1 cut(s) 260
StuI AGGCCT 1 cut(s) 656
StyI CCWWGG 3 cut(s) 249, 478, 607
TaaI ACNGT 2 cut(s) 197, 326
TaiI ACGT 1 cut(s) 369
TaqI TCGA 1 cut(s) 410
TasI AATT 6 cut(s) 71, 125, 161, 231, 373, 593
TfiI GAWTC 1 cut(s) 531
Tru1I TTAA 3 cut(s) 69, 596, 694
Tru9I TTAA 3 cut(s) 69, 596, 694
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 510
XapI RAATTY 4 cut(s) 71, 125, 161, 373
XbaI TCTAGA 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.