FvH4_6g22211

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
15879288 .. 15882652
3365 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22211.t1

Sequence Viewer

Length: 2712 bp
ATGGCTTTTCATTGTACCAATACCTTCAACAAAGTCGAAAGACTTTGGCATCTGCTTCCTCTGCTGATCATAATCATCATCACTTTCTCTGATGGAGCTGAAGCTGATGATGAAAATGACATAACTGTCACAAATGTGGGAGTCATCGTTAATATGAACACTCGCATAGGTAAAGAACAGGAAACAGCTATGGATGTTGCAGCTGAAAACTTCAACAACAATTCAAAGAATTATAGCATTGTCCTTCATTTTCGACATTCTGGATATCCCTTAACTGCAGCTTCTGCTGCTCAAGAGTTGATCAAAGAAAGGAAGGTGAAACTGCTAATTGGCATGGAGACTTGGATTGAAGCAGCTCTAGTGGCTGATGTGGGGAACCAAGCTCAAGTTCCGGTGATTTCATTTGCATCACCTGCTATAACCCCACCTCTAGTTGAACGTCGTTGGCCATTTTTGATACGAGTGGGAAGCAATGGTGCTGCTCAGATGAAATGCATTGCAGATATAGTTTCTGCATACGTTTGGAAAAGGGTTATTGCAATCTATGAGGATGATGGTTATGGTGATGATGCTGGGATTCTAACTCTTTTATCTGAGGCTCTCCAAGATGTTGGTTCAAAGATTGAGCATCATTTGGTTCTCCCACGGGTTTCTTCTGTATCTAATCCTAATTTGGGTGAATTAGAAGAGATGTTGAAGCTTCCCAGCTTTCAATCTCGAGTGTTCATTGTGCTTCAGTCATCTTTGCCAACGGTGACTAATCTATTCAGGGTGGCAAAGAAGATGGGACTTGTAGGAAGAGACTCGGCTTGGATAATCATAGAGAGTACTATTACTGGTTTACTTGACGCCCAAGTCAATCATGATATGGAAGGTGCTCTTGGAATCAAAACCTATAATGCCAATAACACAAGTTCCTATGTCAACTTCAACAAGGCATTCCAAGCAAAGTATCCAGAAGTAGATAACTCCGAGCCAGGAATTTATGCTCTTCGAGCATATGATATGATGAGTATAGTAACACAGGCGATAGAAATGACTAGTAACAGTACTGCTAACCTTCAGGTAGGGTTAAGTAGAGTGCTAAGCAATTACATGGGTTTAAGTGGGAAAATGTTCATTGAAGGAGGTGAAGTCTTGTCCTCTCCCATATTCAGGATCATAAATGTTGTGGAAGGGAACAGCTACAAAGAATTAAACTTTTGGATACCAGAGTTTGGGTTCACAGAACGCCTTTCAGAAGAAACAAGCAAAAACAGAAGTGATGGTGTTGGTGCAGTAGTTTGGCCCGGGAATCTAAGCCAAAAAGACCCCGAAGGCTGGGCAATGCCTACTGCTGATAAGCCAATGAGAATTGGGGTTCCTAAGGCTTCCTTCACGGCATTTGCAAAACTTGGTTTAGATGGGAAGAGTTATCAAGGTTTCTGCATTGAAATTTTCCAAATGGTGCGAATTCGTTTGAATTATCCTCTGCCCTTTGAATTCCAATACGTTGATGGCTCCTACGATGAAGATGTAGAACTAGTCCATAACAAGACTCTTGATGCTGTTATTGGTGATATCACTATAACAGCAGACCGATTCAGCGTAGTGGAATACACACAGCCATATATCGAGTCTCCTTTGGTACTAATAGTTCCAGGGAAAGCTGAGGATTTGGAATGGACGTTAGTAAAACCTTTCTCCGGGAAAATGTGGACAGCAAGTGGTGGCATATTAGCCTACACTATCTTCATCATATGGTTTCTGGAGCGCTCAGTTAATCCAAAATTCAGCGGTCCATTGAAGAATCAGATTGGCAGAGCAATTTGGTTCGCCTTCACCTCTTTGTTCTTTTCTCACAGAGAGAGACTCTATAACAAATTAACTAAAGTAGTTGTTCTAGTGTGGCTGTTTGTTGTATTGATCCTGGTCACAAGCTACACTGCTAATCTCTCTTCAATCCTGACGATTCAACGATTGAAACCGAATGTATCAGACATTGAAACGCTAAAGAGAACCAACTCTAAAGTTGGCTTGAATACGCATTCGTTTGTCGTCAATTACTTGGTGACTGTACTTGGATTCAAGCCAGAAAACCTCATCAAAATAGACAGTGAATCCGACTACATAGAGGCGTTCGAAAACAGAAGTATATCTGCTGCATTGCTTGAGTTCCCATATGCGAAAGTATTTATGAACCAGTACTGCAAGGGATATACTGCGACCACACTCTCCTATAGATTTGGAGGGCTAGGCTTTATATTTCAGAAAGACTCTCCAATTGCCCGGGATTTCACCAAGGTCATTTTAGAGTTATTGGAGGAGGGAAAAATGATGTCACTTGAAGATGCTTGGTTGACACCAAATCGTGGGTGTCCAAACAATTCAACTTCAGATGGACCAGAAAGTTTGAAGGTCAAGAATTTTGTAGGACTTTATGTAATCTATGTTGCTACTTCCACCATTTGCTTTCTGTTATCCTTAACTATCTTGCTCAAGCAGTTTCAACAACACCAGGATGCTTACCAAGGCAATGCAAGTGATGAAAGTGTTTGGAACAGAACACTTAGAATGGCAAGATTCGTATATAATAGAGAGTTCAATGTTCCAAGTAGCAGAACTGCAAGTTTTGTTGATGTGCTGGAAATGACTTCCTCCCAATGGGAGCACGCAACCACTTCCACCCCTCTTGGAGCATCTTCTTCAGGCCTCTACCCCCGCACAAACTAG

Protein Analysis

904

Amino Acids

100.9

Weight (kDa)

5.61

Isoelectric Point (pI)

33.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 56 - 348 3e-15 Periplasmic binding protein
ANF_receptor PF01094 61 - 390 1.7e-35 Receptor family ligand binding region
SBP_bac_3 PF00497 469 - 781 9.9e-13 Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd PF10613 470 - 545 1.8e-06 Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan PF00060 564 - 812 1.6e-27 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 421
AasI GACNNNNNNGTC 2 cut(s) 125, 854
Acc36I ACCTGC 1 cut(s) 421
AccB7I CCANNNNNTGG 2 cut(s) 1217, 2351
AciI CCGC 2 cut(s) 1776, 2701
AclWI GGATC 2 cut(s) 1166, 1900
AcoI YGGCCR 1 cut(s) 446
AcsI RAATTY 6 cut(s) 981, 1434, 1452, 1481, 1769, 2404
AcuI CTGAAG 5 cut(s) 120, 719, 1046, 2358, 2670
AcyI GRCGYC 1 cut(s) 849
AfaI GTAC 6 cut(s) 16, 829, 1051, 1629, 2058, 2186
AfeI AGCGCT 1 cut(s) 1754
AfiI CCNNNNNNNGG 7 cut(s) 674, 1155, 1217, 1320, 1685, 2351, 2643
AhlI ACTAGT 2 cut(s) 1040, 1522
AjnI CCWGG 4 cut(s) 976, 1639, 1908, 2496
AjuI GAANNNNNNNTTGG 4 cut(s) 372, 404, 864, 896
AleI CACNNNNGTG 1 cut(s) 134
Alw21I GWGCWC 2 cut(s) 880, 2652
Alw26I GTCTC 4 cut(s) 332, 795, 1623, 1843
AlwI GGATC 2 cut(s) 1166, 1900
AlwNI CAGNNNCTG 1 cut(s) 284
Ama87I CYCGRG 3 cut(s) 717, 1289, 2268
Aor51HI AGCGCT 1 cut(s) 1754
AoxI GGCC 3 cut(s) 446, 1286, 2689
ApeKI GCWGC 6 cut(s) 200, 278, 287, 353, 479, 2141
ApoI RAATTY 6 cut(s) 981, 1434, 1452, 1481, 1769, 2404
Asp700I GAANNNNTTC 1 cut(s) 1115
AspLEI GCGC 1 cut(s) 1755
AspS9I GGNCC 3 cut(s) 1287, 1778, 2381
AsuC2I CCSGG 5 cut(s) 1290, 1291, 1687, 2269, 2270
AsuII TTCGAA 1 cut(s) 2121
AvaI CYCGRG 3 cut(s) 717, 1289, 2268
AvaII GGWCC 2 cut(s) 1778, 2381
AxyI CCTNAGG 1 cut(s) 1365
BaeI ACNNNNGTAYC 2 cut(s) 1199, 1232
BalI TGGCCA 1 cut(s) 448
Bbv12I GWGCWC 2 cut(s) 880, 2652
BbvCI CCTCAGC 1 cut(s) 1650
BbvI GCAGC 6 cut(s) 212, 274, 290, 365, 466, 2128
BccI CCATC 7 cut(s) 86, 548, 778, 1259, 1397, 1490, 2372
BceAI ACGGC 1 cut(s) 1395
BciT130I CCWGG 4 cut(s) 978, 1641, 1910, 2498
BciVI GTATCC 2 cut(s) 963, 1200
BclI TGATCA 2 cut(s) 66, 300
BcnI CCSGG 5 cut(s) 1290, 1291, 1687, 2269, 2270
BcoDI GTCTC 4 cut(s) 332, 795, 1623, 1843
BcuI ACTAGT 2 cut(s) 1040, 1522
BfaI CTAG 7 cut(s) 359, 431, 1041, 1523, 1883, 2234, 2710
BfmI CTRYAG 2 cut(s) 276, 2218
BfoI RGCGCY 1 cut(s) 1756
BfuAI ACCTGC 1 cut(s) 421
BfuI GTATCC 2 cut(s) 963, 1200
BisI GCNGC 6 cut(s) 201, 279, 288, 354, 480, 2142
BlpI GCTNAGC 1 cut(s) 1085
BlsI GCNGC 6 cut(s) 202, 280, 289, 355, 481, 2143
BmcAI AGTACT 3 cut(s) 829, 1051, 2186
Bme1390I CCNGG 9 cut(s) 978, 1290, 1291, 1641, 1687, 1910, 2269, 2270, 2498
Bme18I GGWCC 2 cut(s) 1778, 2381
BmeT110I CYCGRG 3 cut(s) 717, 1289, 2268
BmgT120I GGNCC 3 cut(s) 1287, 1778, 2381
BmiI GGNNCC 3 cut(s) 377, 1362, 1501
BmrFI CCNGG 9 cut(s) 978, 1290, 1291, 1641, 1687, 1910, 2269, 2270, 2498
BmsI GCATC 8 cut(s) 58, 416, 559, 637, 1534, 2320, 2491, 2687
BplI GAGNNNNNCTC 2 cut(s) 1836, 1868
BpmI CTGGAG 1 cut(s) 1769
Bpu10I CCTNAGC 1 cut(s) 1650
Bpu1102I GCTNAGC 1 cut(s) 1085
Bpu14I TTCGAA 1 cut(s) 2121
BpuEI CTTGAG 4 cut(s) 276, 369, 2171, 2462
BpuMI CCSGG 5 cut(s) 1290, 1291, 1687, 2269, 2270
BsaBI GATNNNNATC 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 849
BsaJI CCNNGG 6 cut(s) 644, 1289, 1640, 2268, 2280, 2509
BsaWI WCCGGW 1 cut(s) 391
BsaXI ACNNNNNCTCC 4 cut(s) 132, 162, 1119, 1149
Bsc4I CCNNNNNNNGG 7 cut(s) 674, 1155, 1217, 1320, 1685, 2351, 2643
Bse1I ACTGG 2 cut(s) 841, 2182
Bse21I CCTNAGG 1 cut(s) 1365
Bse3DI GCAATG 5 cut(s) 478, 495, 1332, 2144, 2521
Bse8I GATNNNNATC 1 cut(s) 71
BseBI CCWGG 4 cut(s) 978, 1641, 1910, 2498
BseDI CCNNGG 6 cut(s) 644, 1289, 1640, 2268, 2280, 2509
BseGI GGATG 3 cut(s) 199, 556, 2506
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 7 cut(s) 674, 1155, 1217, 1320, 1685, 2351, 2643
BseMI GCAATG 5 cut(s) 478, 495, 1332, 2144, 2521
BseMII CTCAG 4 cut(s) 497, 585, 1641, 1770
BseNI ACTGG 2 cut(s) 841, 2182
BseRI GAGGAG 1 cut(s) 2318
BseXI GCAGC 6 cut(s) 212, 274, 290, 365, 466, 2128
BseYI CCCAGC 3 cut(s) 572, 704, 1320
BsgI GTGCAG 1 cut(s) 1296
BshFI GGCC 3 cut(s) 448, 1288, 2691
BsiHKAI GWGCWC 2 cut(s) 880, 2652
BsiHKCI CYCGRG 3 cut(s) 717, 1289, 2268
BsiSI CCGG 4 cut(s) 392, 1290, 1686, 2269
BslFI GGGAC 1 cut(s) 801
BslI CCNNNNNNNGG 7 cut(s) 674, 1155, 1217, 1320, 1685, 2351, 2643
BsmAI GTCTC 4 cut(s) 332, 795, 1623, 1843
BsmFI GGGAC 1 cut(s) 801
BsmI GAATGC 2 cut(s) 938, 2026
BsnI GGCC 3 cut(s) 448, 1288, 2691
BsoBI CYCGRG 3 cut(s) 717, 1289, 2268
Bsp119I TTCGAA 1 cut(s) 2121
Bsp1286I GDGCHC 2 cut(s) 880, 2652
Bsp143I GATC 4 cut(s) 66, 300, 1158, 1905
Bsp1720I GCTNAGC 1 cut(s) 1085
BspACI CCGC 2 cut(s) 1776, 2701
BspANI GGCC 3 cut(s) 448, 1288, 2691
BspCNI CTCAG 4 cut(s) 496, 586, 1642, 1769
BspHI TCATGA 1 cut(s) 862
BspLI GGNNCC 3 cut(s) 377, 1362, 1501
BspMAI CTGCAG 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 421
BspPI GGATC 2 cut(s) 1166, 1900
BspQI GCTCTTC 1 cut(s) 996
BspT104I TTCGAA 1 cut(s) 2121
BsrDI GCAATG 5 cut(s) 478, 495, 1332, 2144, 2521
BsrI ACTGG 2 cut(s) 841, 2182
BssECI CCNNGG 6 cut(s) 644, 1289, 1640, 2268, 2280, 2509
BssMI GATC 4 cut(s) 66, 300, 1158, 1905
BssNI GRCGYC 1 cut(s) 849
BssT1I CCWWGG 2 cut(s) 2280, 2509
Bst2UI CCWGG 4 cut(s) 978, 1641, 1910, 2498
Bst4CI ACNGT 5 cut(s) 127, 754, 1049, 2056, 2096
Bst6I CTCTTC 5 cut(s) 681, 793, 996, 1403, 1942
BstACI GRCGYC 1 cut(s) 849
BstAPI GCANNNNNTGC 2 cut(s) 284, 413
BstBI TTCGAA 1 cut(s) 2121
BstC8I GCNNGC 1 cut(s) 2652
BstDEI CTNAG 8 cut(s) 483, 594, 1085, 1298, 1365, 1650, 1756, 2549
BstDSI CCRYGG 1 cut(s) 644
BstF5I GGATG 3 cut(s) 199, 556, 2506
BstH2I RGCGCY 1 cut(s) 1756
BstHHI GCGC 1 cut(s) 1755
BstKTI GATC 4 cut(s) 69, 303, 1161, 1908
BstMAI GTCTC 4 cut(s) 332, 795, 1623, 1843
BstMBI GATC 4 cut(s) 66, 300, 1158, 1905
BstMWI GCNNNNNNNGC 7 cut(s) 61, 284, 287, 362, 413, 944, 995
BstNI CCWGG 4 cut(s) 978, 1641, 1910, 2498
BstSCI CCNGG 9 cut(s) 976, 1288, 1289, 1639, 1685, 1908, 2267, 2268, 2496
BstSFI CTRYAG 2 cut(s) 276, 2218
BstV1I GCAGC 6 cut(s) 212, 274, 290, 365, 466, 2128
BstXI CCANNNNNNTGG 1 cut(s) 611
Bsu36I CCTNAGG 1 cut(s) 1365
BsuI GTATCC 2 cut(s) 963, 1200
BsuRI GGCC 3 cut(s) 448, 1288, 2691
BtgI CCRYGG 1 cut(s) 644
BtsCI GGATG 3 cut(s) 199, 556, 2506
BtsI GCAGTG 1 cut(s) 1923
BtsIMutI CAGTG 2 cut(s) 1923, 2101
BveI ACCTGC 1 cut(s) 421
Cac8I GCNNGC 1 cut(s) 2652
CaiI CAGNNNCTG 1 cut(s) 284
CciI TCATGA 1 cut(s) 862
CfoI GCGC 1 cut(s) 1755
Cfr13I GGNCC 3 cut(s) 1287, 1778, 2381
Cfr9I CCCGGG 2 cut(s) 1289, 2268
CseI GACGC 1 cut(s) 857
Csp6I GTAC 6 cut(s) 15, 828, 1050, 1628, 2057, 2185
CspCI CAANNNNNGTGG 2 cut(s) 2653, 2688
CviAII CATG 3 cut(s) 334, 863, 1096
CviQI GTAC 6 cut(s) 15, 828, 1050, 1628, 2057, 2185
DdeI CTNAG 8 cut(s) 483, 594, 1085, 1298, 1365, 1650, 1756, 2549
DpnI GATC 4 cut(s) 68, 302, 1160, 1907
DpnII GATC 4 cut(s) 66, 300, 1158, 1905
DrdI GACNNNNNNGTC 2 cut(s) 125, 854
DseDI GACNNNNNNGTC 2 cut(s) 125, 854
EaeI YGGCCR 1 cut(s) 446
Eam1104I CTCTTC 5 cut(s) 681, 793, 996, 1403, 1942
EarI CTCTTC 5 cut(s) 681, 793, 996, 1403, 1942
Eco130I CCWWGG 2 cut(s) 2280, 2509
Eco147I AGGCCT 1 cut(s) 2691
Eco32I GATATC 2 cut(s) 266, 1561
Eco47I GGWCC 2 cut(s) 1778, 2381
Eco47III AGCGCT 1 cut(s) 1754
Eco57I CTGAAG 5 cut(s) 120, 719, 1046, 2358, 2670
Eco81I CCTNAGG 1 cut(s) 1365
Eco88I CYCGRG 3 cut(s) 717, 1289, 2268
EcoRI GAATTC 2 cut(s) 1452, 1481
EcoRII CCWGG 4 cut(s) 976, 1639, 1908, 2496
EcoRV GATATC 2 cut(s) 266, 1561
EcoT14I CCWWGG 2 cut(s) 2280, 2509
EcoT22I ATGCAT 1 cut(s) 497
ErhI CCWWGG 2 cut(s) 2280, 2509
FaeI CATG 3 cut(s) 337, 866, 1099
FalI AAGNNNNNCTT 4 cut(s) 864, 896, 1358, 1390
FaqI GGGAC 1 cut(s) 801
FatI CATG 3 cut(s) 333, 862, 1095
FauI CCCGC 1 cut(s) 2708
FauNDI CATATG 3 cut(s) 1000, 1739, 2161
FbaI TGATCA 2 cut(s) 66, 300
Fnu4HI GCNGC 6 cut(s) 201, 279, 288, 354, 480, 2142
FokI GGATG 3 cut(s) 206, 563, 2513
Fsp4HI GCNGC 6 cut(s) 201, 279, 288, 354, 480, 2142
FspBI CTAG 7 cut(s) 359, 431, 1041, 1523, 1883, 2234, 2710
GlaI GCGC 1 cut(s) 1754
GluI GCNGC 6 cut(s) 201, 279, 288, 354, 480, 2142
GsaI CCCAGC 3 cut(s) 576, 708, 1324
GsuI CTGGAG 1 cut(s) 1769
HaeII RGCGCY 1 cut(s) 1756
HaeIII GGCC 3 cut(s) 448, 1288, 2691
HapII CCGG 4 cut(s) 392, 1290, 1686, 2269
HgaI GACGC 1 cut(s) 857
HhaI GCGC 1 cut(s) 1755
Hin1I GRCGYC 1 cut(s) 849
Hin1II CATG 3 cut(s) 337, 866, 1099
Hin6I GCGC 1 cut(s) 1753
HinP1I GCGC 1 cut(s) 1753
HincII GTYRAC 2 cut(s) 925, 2340
HindII GTYRAC 2 cut(s) 925, 2340
HindIII AAGCTT 1 cut(s) 698
HpaII CCGG 4 cut(s) 392, 1290, 1686, 2269
Hpy166II GTNNAC 5 cut(s) 842, 925, 1224, 1698, 2340
Hpy8I GTNNAC 5 cut(s) 842, 925, 1224, 1698, 2340
Hpy99I CGWCG 1 cut(s) 444
HpyCH4III ACNGT 5 cut(s) 127, 754, 1049, 2056, 2096
HpyCH4IV ACGT 4 cut(s) 439, 519, 1491, 1667
HpyF10VI GCNNNNNNNGC 7 cut(s) 61, 284, 287, 362, 413, 944, 995
HpyF3I CTNAG 8 cut(s) 483, 594, 1085, 1298, 1365, 1650, 1756, 2549
HpySE526I ACGT 4 cut(s) 439, 519, 1491, 1667
Hsp92I GRCGYC 1 cut(s) 849
Hsp92II CATG 3 cut(s) 337, 866, 1099
HspAI GCGC 1 cut(s) 1753
Ksp22I TGATCA 2 cut(s) 66, 300
Kzo9I GATC 4 cut(s) 66, 300, 1158, 1905
LguI GCTCTTC 1 cut(s) 996
LmnI GCTCC 5 cut(s) 95, 1505, 1750, 2647, 2675
Lsp1109I GCAGC 6 cut(s) 212, 274, 290, 365, 466, 2128
LweI GCATC 8 cut(s) 58, 416, 559, 637, 1534, 2320, 2491, 2687
MaeI CTAG 7 cut(s) 359, 431, 1041, 1523, 1883, 2234, 2710
MaeII ACGT 4 cut(s) 439, 519, 1491, 1667
MaeIII GTNAC 7 cut(s) 127, 754, 1018, 1043, 1912, 2050, 2319
MalI GATC 4 cut(s) 68, 302, 1160, 1907
MboI GATC 4 cut(s) 66, 300, 1158, 1905
MfeI CAATTG 1 cut(s) 2262
MhlI GDGCHC 2 cut(s) 880, 2652
MlsI TGGCCA 1 cut(s) 448
MluNI TGGCCA 1 cut(s) 448
MlyI GAGTC 6 cut(s) 150, 797, 1531, 1625, 1845, 2249
MmeI TCCRAC 1 cut(s) 2127
Mox20I TGGCCA 1 cut(s) 448
Mph1103I ATGCAT 1 cut(s) 497
MroXI GAANNNNTTC 1 cut(s) 1115
MscI TGGCCA 1 cut(s) 448
MseI TTAA 8 cut(s) 150, 272, 1073, 1103, 1196, 1761, 1865, 2465
MslI CAYNNNNRTG 2 cut(s) 134, 2499
Msp20I TGGCCA 1 cut(s) 448
MspA1I CMGCKG 2 cut(s) 203, 1776
MspI CCGG 4 cut(s) 392, 1290, 1686, 2269
MspR9I CCNGG 9 cut(s) 978, 1290, 1291, 1641, 1687, 1910, 2269, 2270, 2498
MunI CAATTG 1 cut(s) 2262
Mva1269I GAATGC 2 cut(s) 938, 2026
MvaI CCWGG 4 cut(s) 978, 1641, 1910, 2498
MwoI GCNNNNNNNGC 7 cut(s) 61, 284, 287, 362, 413, 944, 995
NciI CCSGG 5 cut(s) 1290, 1291, 1687, 2269, 2270
NdeI CATATG 3 cut(s) 1000, 1739, 2161
NdeII GATC 4 cut(s) 66, 300, 1158, 1905
NlaIII CATG 3 cut(s) 337, 866, 1099
NlaIV GGNNCC 3 cut(s) 377, 1362, 1501
NmeAIII GCCGAG 1 cut(s) 785
NmuCI GTSAC 5 cut(s) 127, 754, 1912, 2050, 2319
NsiI ATGCAT 1 cut(s) 497
NspV TTCGAA 1 cut(s) 2121
OliI CACNNNNGTG 1 cut(s) 134
PaeR7I CTCGAG 1 cut(s) 717
PagI TCATGA 1 cut(s) 862
PaqCI CACCTGC 1 cut(s) 421
PceI AGGCCT 1 cut(s) 2691
PciSI GCTCTTC 1 cut(s) 996
PctI GAATGC 2 cut(s) 938, 2026
PdmI GAANNNNTTC 1 cut(s) 1115
PfeI GAWTC 9 cut(s) 577, 885, 1294, 1581, 1789, 1951, 2064, 2099, 2562
PflMI CCANNNNNTGG 2 cut(s) 1217, 2351
PfoI TCCNGGA 1 cut(s) 1685
PkrI GCNGC 6 cut(s) 202, 280, 289, 355, 481, 2143
PleI GAGTC 6 cut(s) 149, 797, 1531, 1624, 1845, 2249
PpsI GAGTC 6 cut(s) 149, 797, 1531, 1624, 1845, 2249
Psp6I CCWGG 4 cut(s) 976, 1639, 1908, 2496
PspFI CCCAGC 3 cut(s) 572, 704, 1320
PspGI CCWGG 4 cut(s) 976, 1639, 1908, 2496
PspN4I GGNNCC 3 cut(s) 377, 1362, 1501
PspPI GGNCC 3 cut(s) 1287, 1778, 2381
PsrI GAACNNNNNNTAC 2 cut(s) 1620, 1652
PstI CTGCAG 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 6 cut(s) 16, 829, 1051, 1629, 2058, 2186
RsaNI GTAC 6 cut(s) 15, 828, 1050, 1628, 2057, 2185
RseI CAYNNNNRTG 2 cut(s) 134, 2499
SapI GCTCTTC 1 cut(s) 996
SaqAI TTAA 8 cut(s) 150, 272, 1073, 1103, 1196, 1761, 1865, 2465
SatI GCNGC 6 cut(s) 201, 279, 288, 354, 480, 2142
Sau3AI GATC 4 cut(s) 66, 300, 1158, 1905
Sau96I GGNCC 3 cut(s) 1287, 1778, 2381
ScaI AGTACT 3 cut(s) 829, 1051, 2186
SchI GAGTC 6 cut(s) 150, 797, 1531, 1625, 1845, 2249
ScrFI CCNGG 9 cut(s) 978, 1290, 1291, 1641, 1687, 1910, 2269, 2270, 2498
SduI GDGCHC 2 cut(s) 880, 2652
SfaNI GCATC 8 cut(s) 58, 416, 559, 637, 1534, 2320, 2491, 2687
SfcI CTRYAG 2 cut(s) 276, 2218
Sfr274I CTCGAG 1 cut(s) 717
SfuI TTCGAA 1 cut(s) 2121
SinI GGWCC 2 cut(s) 1778, 2381
SlaI CTCGAG 1 cut(s) 717
SmaI CCCGGG 2 cut(s) 1291, 2270
SmiMI CAYNNNNRTG 2 cut(s) 134, 2499
SmlI CTYRAG 5 cut(s) 291, 384, 717, 2150, 2477
SmoI CTYRAG 5 cut(s) 291, 384, 717, 2150, 2477
SpeI ACTAGT 2 cut(s) 1040, 1522
SseBI AGGCCT 1 cut(s) 2691
SsiI CCGC 2 cut(s) 1776, 2701
SspMI CTAG 7 cut(s) 359, 431, 1041, 1523, 1883, 2234, 2710
StuI AGGCCT 1 cut(s) 2691
StyD4I CCNGG 9 cut(s) 976, 1288, 1289, 1639, 1685, 1908, 2267, 2268, 2496
StyI CCWWGG 2 cut(s) 2280, 2509
TaaI ACNGT 5 cut(s) 127, 754, 1049, 2056, 2096
TaiI ACGT 4 cut(s) 442, 522, 1494, 1670
TaqI TCGA 6 cut(s) 36, 253, 718, 994, 1614, 2121
TaqII GACCGA 1 cut(s) 1593
TatI WGTACW 4 cut(s) 827, 1049, 2056, 2184
TfiI GAWTC 9 cut(s) 577, 885, 1294, 1581, 1789, 1951, 2064, 2099, 2562
Tru1I TTAA 8 cut(s) 150, 272, 1073, 1103, 1196, 1761, 1865, 2465
Tru9I TTAA 8 cut(s) 150, 272, 1073, 1103, 1196, 1761, 1865, 2465
TscAI CASTG 2 cut(s) 1930, 2101
TseFI GTSAC 5 cut(s) 127, 754, 1912, 2050, 2319
TseI GCWGC 6 cut(s) 200, 278, 287, 353, 479, 2141
Tsp45I GTSAC 5 cut(s) 127, 754, 1912, 2050, 2319
TspMI CCCGGG 2 cut(s) 1289, 2268
TspRI CASTG 2 cut(s) 1930, 2101
Van91I CCANNNNNTGG 2 cut(s) 1217, 2351
VpaK11BI GGWCC 2 cut(s) 1778, 2381
XapI RAATTY 6 cut(s) 981, 1434, 1452, 1481, 1769, 2404
XcmI CCANNNNNNNNNTGG 1 cut(s) 1493
XhoI CTCGAG 1 cut(s) 717
XmaI CCCGGG 2 cut(s) 1289, 2268
XmnI GAANNNNTTC 1 cut(s) 1115
XspI CTAG 7 cut(s) 359, 431, 1041, 1523, 1883, 2234, 2710
ZrmI AGTACT 3 cut(s) 829, 1051, 2186
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.