Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Reverse (-)

87829362 .. 87832578

Gene Structure 3217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2268 bp

ATGGAGACTTGGCAGGAAGCAGCTCTAGTAGCTGATCATGTGGGAAACCAATCTAAAAAAATTCCGGTAATTTCATTTGCAGCACCAGCCATAACCGTGCCACTAATGCAACAGCGTTGGCCATTTCTGATACGAATGGCAAGCAATGGATCTGCTCAGATGAAATGCATTGCAGATATAGTTTCTGCATACAAGTGGAAAAGGGTTGTTGTGATATACGAAGACGACGGTTATGGTGGTCAAGTTGGGTTGCTAGCTCTTTTATCTGAGGCTCTTCAAGATGCAAATGCAAAGATTGAGAATCATTTGGTTCTTCCGAGACTAAATAATTCTTCGATGGCTAAGCCTAATTGGGATGAAGTAGAAGAGCTGTTGAAGCTTCCCACCTTTCAGTCTCGGGTGTTTATTGTTCTTCAATCATCTTTACCAACAGTGACTAATCTGTTCAGCGTGGCTAGGAAGATGGGACTTGTAGGGAGAGAGTCGGCTTGGATAATCACAGAATGTATCACCAGTTTGCTTGACCCTCAAGGTGAAGACTCTATGGAAGGAACTCTGGGAATCAAGACCGACTACGCCACTGAGTCTAGTTCTTATGCTGAATTCCAGAAGGAATTCCAAGCTAAGTATGCAGAAGAAAATAACTCCAAGCCAGGAATTTATGCTCTTCGAGCATACGACACTATTACTGTCATTTCAAAGGCCTTAGAAAGGATGCCTAATAACATCACTAGTACTAGCCTTCAGAATATGATAACTACATTGTTGAGCAATTACAAGGGTTTAAGTGGGAATATGCACTTGAAAGAAGGTGAAGCACTGTTGGATTCTCTGAGATTCAGGATCATAAATGTTGTGGATGGGAAGAGGAACAAAGAGTTAAACTTTTGGCCACCAGAGGTTGGGTTCTCCGACGGCCTTGGCTGGGAAGCCTCACACGAGAACCTCACACGTGCGCCTCAAGGCTGGGGAATGCCTACTGCTGGGAAGCCAATGAAATTTGGGGTTCCAGCTGGTAACAAGCACTTCGGTAAATTTGTAAAGGTTGAGCCCAGAAACAATTCATCATATGACTTCTCATATGACGGTTTCTCCATTAGAATTTTCTACACGGTACTAACTCATTTGAATTATCATCTACCATTTGAATTTTTACCCTTTAACGGTTCTTACGATGATTTGGTAGAAGGAGTTTATAACAAGACTTTTGATGCTGCTGTTGGTGATTTCACTATATTACCTGAGCGAATGGAGAAAGTGGAATTCACTCAGCCATATATGAAGTCTGGTTTGTCAATGATAGTAGTAGAAAAATACGATGAATCAACATGGATGTTTGTGAGACCTTTCACATGGAAAATATGGGTGGTGAGTGGTGCCATCTTAATCTACACTAGTTTAGTAGTATGGTTCCTGGAGCGCTCAAGAAATCCAGAATTTGATGGTTCATTGAAGAATCAGATTGGCACAGCAACTTATATCACTTTCTCCTCCTTGTTCTTTGCTCACAGAGAAAAAGTATATACCAACTTTGCTCGGGTAGTATTTCTTCTGTGGCTATTTATTGTATTGATCTTGAGCTCAAGCTACACTGCTAGTCTTTCTTCCATGCTTACCACCCAACGACCGACCTTAAATGTAACAACTGAAATGTTAAACAAGACTGATGCCAAAGTTGGTTGGGATGGAGGTCCATTTGTCTCAAAGTATCTGTCAGATACCTATAAATTCGATGCTAACAACAGAATCAATGTAAGCAGCGAAAACAGCTACACTGATGCATTCAAAAGCAAAAATATAACTGCTATGTTTCTTGAACTCCCATATGCTCAAGTCTACATGAACGAGCTCTGTGAGGGATATACTTCAATCACAGAACCCTATGAATTTGGAGGATTTAGCTTTATATTCCAGAAAGGCTCTCCAATAGCTAATGATTTCTCTAAGGCCATTCTAGAGCTATTGGAGAATGGATATATCAAGCAACTTCAAAATGAATTATTGACTCCCGAGAAGCAGTGTCCAAACACTAATAGTAGACCAAAAAGCTTGAGCCTTAATAGCTTTTCGGGTCTCTATGTAATATGCGGTGCTACTTCCACCCTGTGTCTTCTACTATCTTTTACCCCATGTGTGAGGAAGTCTCAGAAGCAAGAAATGCACGAAGGCAATGCAGGTCCAAGTGATGAAAGTGTCCTTCGATCCAAACACTCCAACAGTCCGCAGGCCATCACATCCGTAGAAATCGAATGCGTGCCGCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

755

Amino Acids

84.94

Weight (kDa)

5.86

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	19 - 286	2.3e-34	Receptor family ligand binding region
SBP_bac_3	PF00497	360 - 666	2e-12	Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd	PF10613	388 - 435	2.6e-07	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	451 - 698	7.6e-26	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1197
Acc36I	ACCTGC	1 cut(s)	2165
AccB1I	GGYRCC	1 cut(s)	1376
AccB7I	CCANNNNNTGG	1 cut(s)	902
AccI	GTMKAC	2 cut(s)	1836, 2038
AciI	CCGC	3 cut(s)	2088, 2222, 2258
AclWI	GGATC	3 cut(s)	157, 851, 2196
AcoI	YGGCCR	2 cut(s)	119, 890
AcuI	CTGAAG	1 cut(s)	728
AcvI	CACGTG	1 cut(s)	953
AdeI	CACNNNGTG	1 cut(s)	2106
AfaI	GTAC	2 cut(s)	736, 1116
AfeI	AGCGCT	1 cut(s)	1421
AfiI	CCNNNNNNNGG	5 cut(s)	711, 902, 925, 983, 1163
AflIII	ACRYGT	1 cut(s)	950
AhlI	ACTAGT	2 cut(s)	731, 1394
AjnI	CCWGG	2 cut(s)	652, 1413
Alw21I	GWGCWC	2 cut(s)	1583, 1851
Alw26I	GTCTC	6 cut(s)	313, 399, 1336, 1705, 2078, 2148
AlwI	GGATC	3 cut(s)	157, 851, 2196
Ama87I	CYCGRG	3 cut(s)	396, 1536, 2009
Aor51HI	AGCGCT	1 cut(s)	1421
AoxI	GGCC	6 cut(s)	119, 702, 890, 916, 1947, 2226
ApeKI	GCWGC	4 cut(s)	20, 80, 1214, 1758
ArsI	GACNNNNNNTTYG	2 cut(s)	1697, 1729
Asp700I	GAANNNNTTC	2 cut(s)	614, 1060
AspLEI	GCGC	2 cut(s)	958, 1422
AspS9I	GGNCC	2 cut(s)	1691, 2177
AsuHPI	GGTGA	5 cut(s)	502, 545, 824, 1235, 1381
AsuNHI	GCTAGC	1 cut(s)	253
AvaI	CYCGRG	3 cut(s)	396, 1536, 2009
AvaII	GGWCC	2 cut(s)	1691, 2177
BalI	TGGCCA	2 cut(s)	121, 892
BanI	GGYRCC	1 cut(s)	1376
BanII	GRGCYC	3 cut(s)	1053, 1583, 1851
BarI	GAAGNNNNNNTAC	2 cut(s)	1533, 1565
BauI	CACGAG	1 cut(s)	938
BbrPI	CACGTG	1 cut(s)	953
BbsI	GAAGAC	3 cut(s)	228, 543, 2102
Bbv12I	GWGCWC	2 cut(s)	1583, 1851
BbvI	GCAGC	4 cut(s)	32, 92, 1201, 1770
BccI	CCATC	7 cut(s)	331, 457, 854, 1388, 1436, 1679, 2237
BceAI	ACGGC	1 cut(s)	931
BcgI	CGANNNNNNTGC	2 cut(s)	2153, 2187
BciT130I	CCWGG	2 cut(s)	654, 1415
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	6 cut(s)	313, 399, 1336, 1705, 2078, 2148
BcuI	ACTAGT	2 cut(s)	731, 1394
BfaI	CTAG	9 cut(s)	26, 254, 456, 588, 732, 738, 1395, 1596, 1955
BfoI	RGCGCY	1 cut(s)	1423
BfuAI	ACCTGC	1 cut(s)	2165
BisI	GCNGC	5 cut(s)	21, 81, 1215, 1759, 2258
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	5 cut(s)	22, 82, 1216, 1760, 2259
BmcAI	AGTACT	1 cut(s)	736
Bme1390I	CCNGG	2 cut(s)	654, 1415
Bme18I	GGWCC	2 cut(s)	1691, 2177
BmeT110I	CYCGRG	3 cut(s)	396, 1536, 2009
BmgT120I	GGNCC	2 cut(s)	1691, 2177
BmiI	GGNNCC	3 cut(s)	1008, 1378, 1412
BmrFI	CCNGG	2 cut(s)	654, 1415
BmsI	GCATC	6 cut(s)	271, 705, 1201, 1657, 1723, 1768
BmtI	GCTAGC	1 cut(s)	257
BpiI	GAAGAC	3 cut(s)	228, 543, 2102
BplI	GAGNNNNNCTC	2 cut(s)	2128, 2160
BpmI	CTGGAG	1 cut(s)	1436
Bpu10I	CCTNAGC	1 cut(s)	1242
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	7 cut(s)	513, 945, 1408, 1567, 1597, 1815, 2071
BsaAI	YACGTR	1 cut(s)	953
BsaI	GGTCTC	2 cut(s)	1336, 2078
BsaJI	CCNNGG	1 cut(s)	919
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	1076, 1106
Bsc4I	CCNNNNNNNGG	5 cut(s)	711, 902, 925, 983, 1163
Bse1I	ACTGG	1 cut(s)	513
Bse3DI	GCAATG	3 cut(s)	151, 168, 2176
BseBI	CCWGG	2 cut(s)	654, 1415
BseDI	CCNNGG	1 cut(s)	919
BseGI	GGATG	6 cut(s)	361, 720, 865, 1338, 1690, 2234
BseLI	CCNNNNNNNGG	5 cut(s)	711, 902, 925, 983, 1163
BseMI	GCAATG	3 cut(s)	151, 168, 2176
BseMII	CTCAG	7 cut(s)	170, 258, 573, 824, 1233, 1283, 2159
BseNI	ACTGG	1 cut(s)	513
BseRI	GAGGAG	1 cut(s)	1480
BseXI	GCAGC	4 cut(s)	32, 92, 1201, 1770
BseYI	CCCAGC	3 cut(s)	924, 966, 983
Bsh1285I	CGRYCG	1 cut(s)	1628
BshFI	GGCC	6 cut(s)	121, 704, 892, 918, 1949, 2228
BshNI	GGYRCC	1 cut(s)	1376
BsiEI	CGRYCG	1 cut(s)	1628
BsiHKAI	GWGCWC	2 cut(s)	1583, 1851
BsiHKCI	CYCGRG	3 cut(s)	396, 1536, 2009
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	5 cut(s)	711, 902, 925, 983, 1163
BsmAI	GTCTC	6 cut(s)	313, 399, 1336, 1705, 2078, 2148
BsmFI	GGGAC	1 cut(s)	480
BsmI	GAATGC	3 cut(s)	978, 1781, 2255
BsnI	GGCC	6 cut(s)	121, 704, 892, 918, 1949, 2228
Bso31I	GGTCTC	2 cut(s)	1336, 2078
BsoBI	CYCGRG	3 cut(s)	396, 1536, 2009
Bsp1286I	GDGCHC	3 cut(s)	1053, 1583, 1851
Bsp143I	GATC	5 cut(s)	34, 149, 843, 1572, 2201
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	3 cut(s)	2088, 2222, 2258
BspANI	GGCC	6 cut(s)	121, 704, 892, 918, 1949, 2228
BspCNI	CTCAG	7 cut(s)	169, 259, 574, 825, 1234, 1282, 2158
BspLI	GGNNCC	3 cut(s)	1008, 1378, 1412
BspMI	ACCTGC	1 cut(s)	2165
BspOI	GCTAGC	1 cut(s)	257
BspPI	GGATC	3 cut(s)	157, 851, 2196
BspQI	GCTCTTC	3 cut(s)	279, 360, 672
BspT107I	GGYRCC	1 cut(s)	1376
BspTNI	GGTCTC	2 cut(s)	1336, 2078
BsrDI	GCAATG	3 cut(s)	151, 168, 2176
BsrI	ACTGG	1 cut(s)	513
BssECI	CCNNGG	1 cut(s)	919
BssMI	GATC	5 cut(s)	34, 149, 843, 1572, 2201
BssSI	CACGAG	1 cut(s)	938
BssT1I	CCWWGG	1 cut(s)	919
Bst2BI	CACGAG	1 cut(s)	938
Bst2UI	CCWGG	2 cut(s)	654, 1415
Bst4CI	ACNGT	9 cut(s)	97, 230, 433, 691, 822, 1088, 1114, 1166, 2219
Bst6I	CTCTTC	4 cut(s)	279, 360, 672, 860
BstAPI	GCANNNNNTGC	1 cut(s)	2158
BstBAI	YACGTR	1 cut(s)	953
BstC8I	GCNNGC	4 cut(s)	142, 255, 2226, 2255
BstENI	CCTNNNNNAGG	1 cut(s)	709
BstF5I	GGATG	6 cut(s)	361, 720, 865, 1338, 1690, 2234
BstH2I	RGCGCY	1 cut(s)	1423
BstHHI	GCGC	2 cut(s)	958, 1422
BstKTI	GATC	5 cut(s)	37, 152, 846, 1575, 2204
BstMAI	GTCTC	6 cut(s)	313, 399, 1336, 1705, 2078, 2148
BstMBI	GATC	5 cut(s)	34, 149, 843, 1572, 2201
BstMCI	CGRYCG	1 cut(s)	1628
BstMWI	GCNNNNNNNGC	9 cut(s)	29, 86, 106, 376, 629, 671, 1767, 2061, 2158
BstNI	CCWGG	2 cut(s)	654, 1415
BstSCI	CCNGG	2 cut(s)	652, 1413
BstV1I	GCAGC	4 cut(s)	32, 92, 1201, 1770
BstV2I	GAAGAC	3 cut(s)	228, 543, 2102
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BsuRI	GGCC	6 cut(s)	121, 704, 892, 918, 1949, 2228
BtsCI	GGATG	6 cut(s)	361, 720, 865, 1338, 1690, 2234
BtsI	GCAGTG	2 cut(s)	1590, 2024
BtsIMutI	CAGTG	6 cut(s)	438, 579, 818, 1590, 1773, 2024
BveI	ACCTGC	1 cut(s)	2165
Cac8I	GCNNGC	4 cut(s)	142, 255, 2226, 2255
CfoI	GCGC	2 cut(s)	958, 1422
Cfr13I	GGNCC	2 cut(s)	1691, 2177
Csp6I	GTAC	2 cut(s)	735, 1115
CviAII	CATG	6 cut(s)	38, 1329, 1353, 1609, 1840, 2130
CviQI	GTAC	2 cut(s)	735, 1115
DpnI	GATC	5 cut(s)	36, 151, 845, 1574, 2203
DpnII	GATC	5 cut(s)	34, 149, 843, 1572, 2201
DraIII	CACNNNGTG	1 cut(s)	2106
EaeI	YGGCCR	2 cut(s)	119, 890
Eam1104I	CTCTTC	4 cut(s)	279, 360, 672, 860
EarI	CTCTTC	4 cut(s)	279, 360, 672, 860
Ecl136II	GAGCTC	2 cut(s)	1581, 1849
Eco130I	CCWWGG	1 cut(s)	919
Eco147I	AGGCCT	1 cut(s)	704
Eco24I	GRGCYC	3 cut(s)	1053, 1583, 1851
Eco31I	GGTCTC	2 cut(s)	1336, 2078
Eco47I	GGWCC	2 cut(s)	1691, 2177
Eco47III	AGCGCT	1 cut(s)	1421
Eco53kI	GAGCTC	2 cut(s)	1581, 1849
Eco57I	CTGAAG	1 cut(s)	728
Eco72I	CACGTG	1 cut(s)	953
Eco88I	CYCGRG	3 cut(s)	396, 1536, 2009
EcoICRI	GAGCTC	2 cut(s)	1581, 1849
EcoNI	CCTNNNNNAGG	1 cut(s)	709
EcoRI	GAATTC	3 cut(s)	602, 614, 1262
EcoRII	CCWGG	2 cut(s)	652, 1413
EcoT14I	CCWWGG	1 cut(s)	919
EcoT22I	ATGCAT	2 cut(s)	170, 1783
EcoT38I	GRGCYC	3 cut(s)	1053, 1583, 1851
ErhI	CCWWGG	1 cut(s)	919
FaeI	CATG	6 cut(s)	41, 1332, 1356, 1612, 1843, 2133
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	6 cut(s)	37, 1328, 1352, 1608, 1839, 2129
FauNDI	CATATG	3 cut(s)	1069, 1081, 1825
FbaI	TGATCA	1 cut(s)	34
FblI	GTMKAC	2 cut(s)	1836, 2038
Fnu4HI	GCNGC	5 cut(s)	21, 81, 1215, 1759, 2258
FokI	GGATG	6 cut(s)	368, 727, 872, 1345, 1697, 2221
FriOI	GRGCYC	3 cut(s)	1053, 1583, 1851
Fsp4HI	GCNGC	5 cut(s)	21, 81, 1215, 1759, 2258
FspBI	CTAG	9 cut(s)	26, 254, 456, 588, 732, 738, 1395, 1596, 1955
GlaI	GCGC	2 cut(s)	957, 1421
GluI	GCNGC	5 cut(s)	21, 81, 1215, 1759, 2258
GsaI	CCCAGC	3 cut(s)	928, 970, 987
GsuI	CTGGAG	1 cut(s)	1436
HaeII	RGCGCY	1 cut(s)	1423
HaeIII	GGCC	6 cut(s)	121, 704, 892, 918, 1949, 2228
HapII	CCGG	1 cut(s)	65
HhaI	GCGC	2 cut(s)	958, 1422
Hin1II	CATG	6 cut(s)	41, 1332, 1356, 1612, 1843, 2133
Hin6I	GCGC	2 cut(s)	956, 1420
HinP1I	GCGC	2 cut(s)	956, 1420
HindIII	AAGCTT	2 cut(s)	377, 2047
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	5 cut(s)	502, 545, 824, 1235, 1381
Hpy166II	GTNNAC	2 cut(s)	1837, 2039
Hpy8I	GTNNAC	2 cut(s)	1837, 2039
Hpy99I	CGWCG	2 cut(s)	230, 917
HpyAV	CCTTC	7 cut(s)	542, 604, 752, 803, 1181, 2159, 2207
HpyCH4III	ACNGT	9 cut(s)	97, 230, 433, 691, 822, 1088, 1114, 1166, 2219
HpyCH4IV	ACGT	1 cut(s)	952
HpyF10VI	GCNNNNNNNGC	9 cut(s)	29, 86, 106, 376, 629, 671, 1767, 2061, 2158
HpySE526I	ACGT	1 cut(s)	952
Hsp92II	CATG	6 cut(s)	41, 1332, 1356, 1612, 1843, 2133
HspAI	GCGC	2 cut(s)	956, 1420
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	5 cut(s)	34, 149, 843, 1572, 2201
LguI	GCTCTTC	3 cut(s)	279, 360, 672
LmnI	GCTCC	1 cut(s)	1417
Lsp1109I	GCAGC	4 cut(s)	32, 92, 1201, 1770
LweI	GCATC	6 cut(s)	271, 705, 1201, 1657, 1723, 1768
MaeI	CTAG	9 cut(s)	26, 254, 456, 588, 732, 738, 1395, 1596, 1955
MaeII	ACGT	1 cut(s)	952
MaeIII	GTNAC	3 cut(s)	433, 1016, 1639
MalI	GATC	5 cut(s)	36, 151, 845, 1574, 2203
MboI	GATC	5 cut(s)	34, 149, 843, 1572, 2201
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	3 cut(s)	1053, 1583, 1851
MlsI	TGGCCA	2 cut(s)	121, 892
MluNI	TGGCCA	2 cut(s)	121, 892
MlyI	GAGTC	4 cut(s)	491, 533, 593, 1999
MmeI	TCCRAC	3 cut(s)	804, 936, 2238
Mox20I	TGGCCA	2 cut(s)	121, 892
Mph1103I	ATGCAT	2 cut(s)	170, 1783
MroXI	GAANNNNTTC	2 cut(s)	614, 1060
MscI	TGGCCA	2 cut(s)	121, 892
MseI	TTAA	7 cut(s)	785, 881, 1161, 1385, 1634, 1655, 2058
MslI	CAYNNNNRTG	2 cut(s)	95, 193
Msp20I	TGGCCA	2 cut(s)	121, 892
MspA1I	CMGCKG	1 cut(s)	1013
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	654, 1415
Mva1269I	GAATGC	3 cut(s)	978, 1781, 2255
MvaI	CCWGG	2 cut(s)	654, 1415
MwoI	GCNNNNNNNGC	9 cut(s)	29, 86, 106, 376, 629, 671, 1767, 2061, 2158
NdeI	CATATG	3 cut(s)	1069, 1081, 1825
NdeII	GATC	5 cut(s)	34, 149, 843, 1572, 2201
NheI	GCTAGC	1 cut(s)	253
NlaIII	CATG	6 cut(s)	41, 1332, 1356, 1612, 1843, 2133
NlaIV	GGNNCC	3 cut(s)	1008, 1378, 1412
NmuCI	GTSAC	1 cut(s)	433
NsiI	ATGCAT	2 cut(s)	170, 1783
PceI	AGGCCT	1 cut(s)	704
PciSI	GCTCTTC	3 cut(s)	279, 360, 672
PcsI	WCGNNNNNNNCGW	1 cut(s)	1170
PctI	GAATGC	3 cut(s)	978, 1781, 2255
PdmI	GAANNNNTTC	2 cut(s)	614, 1060
PfeI	GAWTC	7 cut(s)	301, 561, 827, 837, 1322, 1456, 1746
PflMI	CCANNNNNTGG	1 cut(s)	902
PfoI	TCCNGGA	1 cut(s)	1413
PkrI	GCNGC	5 cut(s)	22, 82, 1216, 1760, 2259
PleI	GAGTC	4 cut(s)	490, 533, 592, 1999
PmaCI	CACGTG	1 cut(s)	953
PmlI	CACGTG	1 cut(s)	953
PpsI	GAGTC	4 cut(s)	490, 533, 592, 1999
Ppu21I	YACGTR	1 cut(s)	953
PsiI	TTATAA	1 cut(s)	1197
Psp124BI	GAGCTC	2 cut(s)	1583, 1851
Psp6I	CCWGG	2 cut(s)	652, 1413
PspCI	CACGTG	1 cut(s)	953
PspFI	CCCAGC	3 cut(s)	924, 966, 983
PspGI	CCWGG	2 cut(s)	652, 1413
PspN4I	GGNNCC	3 cut(s)	1008, 1378, 1412
PspPI	GGNCC	2 cut(s)	1691, 2177
PsuI	RGATCY	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	1013
RsaI	GTAC	2 cut(s)	736, 1116
RsaNI	GTAC	2 cut(s)	735, 1115
RseI	CAYNNNNRTG	2 cut(s)	95, 193
SacI	GAGCTC	2 cut(s)	1583, 1851
SapI	GCTCTTC	3 cut(s)	279, 360, 672
SaqAI	TTAA	7 cut(s)	785, 881, 1161, 1385, 1634, 1655, 2058
SatI	GCNGC	5 cut(s)	21, 81, 1215, 1759, 2258
Sau3AI	GATC	5 cut(s)	34, 149, 843, 1572, 2201
Sau96I	GGNCC	2 cut(s)	1691, 2177
ScaI	AGTACT	1 cut(s)	736
SchI	GAGTC	4 cut(s)	491, 533, 593, 1999
ScrFI	CCNGG	2 cut(s)	654, 1415
SduI	GDGCHC	3 cut(s)	1053, 1583, 1851
SfaNI	GCATC	6 cut(s)	271, 705, 1201, 1657, 1723, 1768
SinI	GGWCC	2 cut(s)	1691, 2177
SmiMI	CAYNNNNRTG	2 cut(s)	95, 193
SmlI	CTYRAG	7 cut(s)	528, 960, 1423, 1576, 1582, 1830, 2050
SmoI	CTYRAG	7 cut(s)	528, 960, 1423, 1576, 1582, 1830, 2050
SpeI	ACTAGT	2 cut(s)	731, 1394
SseBI	AGGCCT	1 cut(s)	704
SsiI	CCGC	3 cut(s)	2088, 2222, 2258
SspMI	CTAG	9 cut(s)	26, 254, 456, 588, 732, 738, 1395, 1596, 1955
SstI	GAGCTC	2 cut(s)	1583, 1851
StuI	AGGCCT	1 cut(s)	704
StyD4I	CCNGG	2 cut(s)	652, 1413
StyI	CCWWGG	1 cut(s)	919
TaaI	ACNGT	9 cut(s)	97, 230, 433, 691, 822, 1088, 1114, 1166, 2219
TaiI	ACGT	1 cut(s)	955
TaqI	TCGA	5 cut(s)	335, 670, 1731, 2200, 2247
TaqII	GACCGA	2 cut(s)	584, 1642
TatI	WGTACW	1 cut(s)	734
TauI	GCSGC	1 cut(s)	2260
TfiI	GAWTC	7 cut(s)	301, 561, 827, 837, 1322, 1456, 1746
Tru1I	TTAA	7 cut(s)	785, 881, 1161, 1385, 1634, 1655, 2058
Tru9I	TTAA	7 cut(s)	785, 881, 1161, 1385, 1634, 1655, 2058
TscAI	CASTG	6 cut(s)	438, 586, 825, 1597, 1780, 2024
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	4 cut(s)	20, 80, 1214, 1758
Tsp45I	GTSAC	1 cut(s)	433
TspGWI	ACGGA	1 cut(s)	2227
TspRI	CASTG	6 cut(s)	438, 586, 825, 1597, 1780, 2024
Van91I	CCANNNNNTGG	1 cut(s)	902
VpaK11BI	GGWCC	2 cut(s)	1691, 2177
XagI	CCTNNNNNAGG	1 cut(s)	709
XbaI	TCTAGA	1 cut(s)	1954
XmiI	GTMKAC	2 cut(s)	1836, 2038
XmnI	GAANNNNTTC	2 cut(s)	614, 1060
XspI	CTAG	9 cut(s)	26, 254, 456, 588, 732, 738, 1395, 1596, 1955
ZrmI	AGTACT	1 cut(s)	736
Zsp2I	ATGCAT	2 cut(s)	170, 1783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.