FvH4_1g04591

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
2441132 .. 2442645
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04591.t1

Sequence Viewer

Length: 1401 bp
ATGAACACTCGCATAGGTAAAGAACAGGAAACAGCTATGGATGTTGCAGCTGAAAACTTCAACAACAATTCAAAGAATCATAGCATTGTCCTTCATTTTCGACATTCTGGATATCCCTTAACTGCAGCTTCTGCTGCTCAAGAGTTGATCAAAGAAAGGAAGGTGAAACTGCTAATTGGCATGGAGACTTGGATTGAAGCAGCTCTAGTGGCTGATGTGGGGAACCAAGCTCAAGTTCCGGTGATTTCATTTGCATCACCTGCTATAACCCCACCTCTAGTTGAACGTCGTTGGCCATTTTTGATACGAGTGGGAAGCAATGGTGCTGCTCAGATGAAATGCATTGCAGATATAGTTTCTGCATACGGTTGGAAAAGGGTTATTGCAATCTATGAGGATGATGGTTATGGTGATGATGCTGGGATTCTAACTCTTTTATCTGAGGCTCTCCAAGATGTTGGTTCAAAGATTGAGCATCATTTGGTTCTCCCACGGGTTTCTTCTGTATCTAATCCTAATTTGGGTGAATTAGAAGAGATGTTGAAGCTTCCCAGCTTTCAATCTCGAGTGTTCATTGTGCTTCAGTCATCTTTGCCAACGGTGACTAATCTATTCAGGGTGGCAAAGAAGATGGGACTTGTAGGAAGAGACTCGGCTTGGATAATCATAGAGAGTACTATTACTGGTTTACTTGACGCTCAAGTCAATCATGATATGGAAGGTGCTCTTGGAATCAAAACCTATAATGCCAATAACACAAGTTCCTATGTCAACTTCAACAAGGCATTCCAAGCAAAGTATCCAGAAGTAGATAACTCCGAGCCAGGAATTTATGCTCTTCGAGCATATGATATGATGAGTATAGTAACACAGGCGATAGAAATGACTAGTAACAGTACTGCTAACCTTCAGGTAGGGTTAAGTAGAGTGCTAAGCAATTACATGGGTTTAAGTGGGAAAATGTTCATTGAAGGAGGTGAAGTCTTGTCCTCTCCCATATTCAGGATCATAAATGTTGTGGAAGGGAACAGCTACAAAGAATTAAACTTTTGGATACCAGAGTTTGGGTTCACAGAACGCCTTTCAGAAGAAACAAGCAAAAACAGAAGTGATGGTGTTGGTGCAGTAGTTTGGCCAGGGAATCTAAGCCAAAAAGACCCCGAAGGCTGGGCAATGCCTACTGCTGATAAGCCAATGAGAATTGGGGTTCCTAAGGCTTCCTTCACGGCATTTGCAAAACTTGGTTTAGATGGGAAGAGTTATCAAGGTTTCTGCATTGAAATTTTCCAAATGGTGCGAATTCGTTTGAATTATCCTCTGCCCTTTGAATTCCAATACGTTGATGGCTCCTACGATGAAGATGTAGAACTAGTCCATAACAAGGTGAAAATATCTTATTAG

Protein Analysis

467

Amino Acids

51.57

Weight (kDa)

5.46

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 6 - 297 2.2e-17 Periplasmic binding protein
ANF_receptor PF01094 10 - 339 1.3e-37 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 268
AasI GACNNNNNNGTC 1 cut(s) 701
Acc36I ACCTGC 1 cut(s) 268
AccB7I CCANNNNNTGG 1 cut(s) 1064
AclWI GGATC 1 cut(s) 1013
AcoI YGGCCR 2 cut(s) 293, 1133
AcsI RAATTY 4 cut(s) 828, 1281, 1299, 1328
AcuI CTGAAG 2 cut(s) 566, 893
AfaI GTAC 2 cut(s) 676, 898
AfiI CCNNNNNNNGG 5 cut(s) 521, 1002, 1064, 1167, 1381
AhlI ACTAGT 2 cut(s) 887, 1369
AjnI CCWGG 2 cut(s) 823, 1135
AjuI GAANNNNNNNTTGG 4 cut(s) 219, 251, 711, 743
AluBI AGCT 8 cut(s) 35, 50, 128, 203, 230, 547, 555, 1032
AluI AGCT 8 cut(s) 35, 50, 128, 203, 230, 547, 555, 1032
Alw21I GWGCWC 1 cut(s) 727
Alw26I GTCTC 2 cut(s) 179, 642
AlwI GGATC 1 cut(s) 1013
AlwNI CAGNNNCTG 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 564
AoxI GGCC 2 cut(s) 293, 1133
ApeKI GCWGC 5 cut(s) 47, 125, 134, 200, 326
ApoI RAATTY 4 cut(s) 828, 1281, 1299, 1328
Asp700I GAANNNNTTC 1 cut(s) 962
AsuHPI GGTGA 8 cut(s) 175, 249, 253, 422, 536, 613, 989, 1396
AvaI CYCGRG 1 cut(s) 564
AxyI CCTNAGG 1 cut(s) 1212
BaeI ACNNNNGTAYC 2 cut(s) 1046, 1079
BalI TGGCCA 2 cut(s) 295, 1135
Bbv12I GWGCWC 1 cut(s) 727
BbvI GCAGC 5 cut(s) 59, 121, 137, 212, 313
BccI CCATC 5 cut(s) 395, 625, 1106, 1244, 1337
BceAI ACGGC 1 cut(s) 1242
BciT130I CCWGG 2 cut(s) 825, 1137
BciVI GTATCC 2 cut(s) 810, 1047
BclI TGATCA 1 cut(s) 147
BcoDI GTCTC 2 cut(s) 179, 642
BcuI ACTAGT 2 cut(s) 887, 1369
BfaI CTAG 4 cut(s) 206, 278, 888, 1370
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 268
BfuI GTATCC 2 cut(s) 810, 1047
BisI GCNGC 5 cut(s) 48, 126, 135, 201, 327
BlpI GCTNAGC 1 cut(s) 932
BlsI GCNGC 5 cut(s) 49, 127, 136, 202, 328
BmcAI AGTACT 2 cut(s) 676, 898
Bme1390I CCNGG 2 cut(s) 825, 1137
BmeT110I CYCGRG 1 cut(s) 564
BmiI GGNNCC 3 cut(s) 224, 1209, 1348
BmrFI CCNGG 2 cut(s) 825, 1137
BmsI GCATC 3 cut(s) 263, 406, 484
Bpu1102I GCTNAGC 1 cut(s) 932
BpuEI CTTGAG 3 cut(s) 123, 216, 684
BsaJI CCNNGG 2 cut(s) 491, 1136
BsaWI WCCGGW 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 966, 996
Bsc4I CCNNNNNNNGG 5 cut(s) 521, 1002, 1064, 1167, 1381
Bse1I ACTGG 1 cut(s) 688
Bse21I CCTNAGG 1 cut(s) 1212
Bse3DI GCAATG 3 cut(s) 325, 342, 1179
BseBI CCWGG 2 cut(s) 825, 1137
BseDI CCNNGG 2 cut(s) 491, 1136
BseGI GGATG 2 cut(s) 46, 403
BseLI CCNNNNNNNGG 5 cut(s) 521, 1002, 1064, 1167, 1381
BseMI GCAATG 3 cut(s) 325, 342, 1179
BseMII CTCAG 2 cut(s) 344, 432
BseNI ACTGG 1 cut(s) 688
BseXI GCAGC 5 cut(s) 59, 121, 137, 212, 313
BseYI CCCAGC 3 cut(s) 419, 551, 1167
BsgI GTGCAG 1 cut(s) 1143
BshFI GGCC 2 cut(s) 295, 1135
BsiHKAI GWGCWC 1 cut(s) 727
BsiHKCI CYCGRG 1 cut(s) 564
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 648
BslI CCNNNNNNNGG 5 cut(s) 521, 1002, 1064, 1167, 1381
BsmAI GTCTC 2 cut(s) 179, 642
BsmFI GGGAC 1 cut(s) 648
BsmI GAATGC 1 cut(s) 785
BsnI GGCC 2 cut(s) 295, 1135
BsoBI CYCGRG 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 727
Bsp143I GATC 2 cut(s) 147, 1005
Bsp1720I GCTNAGC 1 cut(s) 932
BspANI GGCC 2 cut(s) 295, 1135
BspCNI CTCAG 2 cut(s) 343, 433
BspHI TCATGA 1 cut(s) 709
BspLI GGNNCC 3 cut(s) 224, 1209, 1348
BspMAI CTGCAG 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 1 cut(s) 1013
BspQI GCTCTTC 1 cut(s) 843
BsrDI GCAATG 3 cut(s) 325, 342, 1179
BsrI ACTGG 1 cut(s) 688
BssECI CCNNGG 2 cut(s) 491, 1136
BssMI GATC 2 cut(s) 147, 1005
Bst2UI CCWGG 2 cut(s) 825, 1137
Bst4CI ACNGT 3 cut(s) 368, 601, 896
Bst6I CTCTTC 4 cut(s) 528, 640, 843, 1250
BstAPI GCANNNNNTGC 2 cut(s) 131, 260
BstDEI CTNAG 5 cut(s) 330, 441, 932, 1145, 1212
BstDSI CCRYGG 1 cut(s) 491
BstF5I GGATG 2 cut(s) 46, 403
BstKTI GATC 2 cut(s) 150, 1008
BstMAI GTCTC 2 cut(s) 179, 642
BstMBI GATC 2 cut(s) 147, 1005
BstMWI GCNNNNNNNGC 6 cut(s) 131, 134, 209, 260, 791, 842
BstNI CCWGG 2 cut(s) 825, 1137
BstSCI CCNGG 2 cut(s) 823, 1135
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 5 cut(s) 59, 121, 137, 212, 313
BstXI CCANNNNNNTGG 1 cut(s) 458
Bsu36I CCTNAGG 1 cut(s) 1212
BsuI GTATCC 2 cut(s) 810, 1047
BsuRI GGCC 2 cut(s) 295, 1135
BtgI CCRYGG 1 cut(s) 491
BtsCI GGATG 2 cut(s) 46, 403
BveI ACCTGC 1 cut(s) 268
CaiI CAGNNNCTG 1 cut(s) 131
CciI TCATGA 1 cut(s) 709
CseI GACGC 1 cut(s) 704
Csp6I GTAC 2 cut(s) 675, 897
CviAII CATG 3 cut(s) 181, 710, 943
CviQI GTAC 2 cut(s) 675, 897
DdeI CTNAG 5 cut(s) 330, 441, 932, 1145, 1212
DpnI GATC 2 cut(s) 149, 1007
DpnII GATC 2 cut(s) 147, 1005
DrdI GACNNNNNNGTC 1 cut(s) 701
DseDI GACNNNNNNGTC 1 cut(s) 701
EaeI YGGCCR 2 cut(s) 293, 1133
Eam1104I CTCTTC 4 cut(s) 528, 640, 843, 1250
EarI CTCTTC 4 cut(s) 528, 640, 843, 1250
Eco32I GATATC 1 cut(s) 113
Eco57I CTGAAG 2 cut(s) 566, 893
Eco81I CCTNAGG 1 cut(s) 1212
Eco88I CYCGRG 1 cut(s) 564
EcoRI GAATTC 2 cut(s) 1299, 1328
EcoRII CCWGG 2 cut(s) 823, 1135
EcoRV GATATC 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 344
FaeI CATG 3 cut(s) 184, 713, 946
FalI AAGNNNNNCTT 4 cut(s) 711, 743, 1205, 1237
FaqI GGGAC 1 cut(s) 648
FatI CATG 3 cut(s) 180, 709, 942
FauNDI CATATG 1 cut(s) 847
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 5 cut(s) 48, 126, 135, 201, 327
FokI GGATG 2 cut(s) 53, 410
Fsp4HI GCNGC 5 cut(s) 48, 126, 135, 201, 327
FspBI CTAG 4 cut(s) 206, 278, 888, 1370
GluI GCNGC 5 cut(s) 48, 126, 135, 201, 327
GsaI CCCAGC 3 cut(s) 423, 555, 1171
HaeIII GGCC 2 cut(s) 295, 1135
HapII CCGG 1 cut(s) 239
HgaI GACGC 1 cut(s) 704
Hin1II CATG 3 cut(s) 184, 713, 946
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 5 cut(s) 76, 424, 650, 732, 1141
HpaII CCGG 1 cut(s) 239
HphI GGTGA 8 cut(s) 175, 249, 253, 422, 536, 613, 989, 1396
Hpy166II GTNNAC 3 cut(s) 689, 772, 1071
Hpy188I TCNGA 4 cut(s) 333, 442, 820, 1087
Hpy188III TCNNGA 6 cut(s) 108, 140, 564, 710, 803, 1003
Hpy8I GTNNAC 3 cut(s) 689, 772, 1071
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 8 cut(s) 101, 154, 713, 917, 965, 1016, 1157, 1231
HpyCH4III ACNGT 3 cut(s) 368, 601, 896
HpyCH4IV ACGT 2 cut(s) 286, 1338
HpyF10VI GCNNNNNNNGC 6 cut(s) 131, 134, 209, 260, 791, 842
HpyF3I CTNAG 5 cut(s) 330, 441, 932, 1145, 1212
HpySE526I ACGT 2 cut(s) 286, 1338
Hsp92II CATG 3 cut(s) 184, 713, 946
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 2 cut(s) 147, 1005
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 1 cut(s) 1352
Lsp1109I GCAGC 5 cut(s) 59, 121, 137, 212, 313
LweI GCATC 3 cut(s) 263, 406, 484
MaeI CTAG 4 cut(s) 206, 278, 888, 1370
MaeII ACGT 2 cut(s) 286, 1338
MaeIII GTNAC 3 cut(s) 601, 865, 890
MalI GATC 2 cut(s) 149, 1007
MboI GATC 2 cut(s) 147, 1005
MboII GAAGA 8 cut(s) 492, 545, 640, 657, 830, 1100, 1267, 1370
MhlI GDGCHC 1 cut(s) 727
MlsI TGGCCA 2 cut(s) 295, 1135
MluNI TGGCCA 2 cut(s) 295, 1135
MlyI GAGTC 1 cut(s) 644
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 6 cut(s) 285, 388, 436, 968, 1000, 1326
Mox20I TGGCCA 2 cut(s) 295, 1135
Mph1103I ATGCAT 1 cut(s) 344
MroXI GAANNNNTTC 1 cut(s) 962
MscI TGGCCA 2 cut(s) 295, 1135
MseI TTAA 4 cut(s) 119, 920, 950, 1043
Msp20I TGGCCA 2 cut(s) 295, 1135
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 825, 1137
Mva1269I GAATGC 1 cut(s) 785
MvaI CCWGG 2 cut(s) 825, 1137
MwoI GCNNNNNNNGC 6 cut(s) 131, 134, 209, 260, 791, 842
NdeI CATATG 1 cut(s) 847
NdeII GATC 2 cut(s) 147, 1005
NlaIII CATG 3 cut(s) 184, 713, 946
NlaIV GGNNCC 3 cut(s) 224, 1209, 1348
NmeAIII GCCGAG 1 cut(s) 632
NmuCI GTSAC 1 cut(s) 601
NsiI ATGCAT 1 cut(s) 344
PaeR7I CTCGAG 1 cut(s) 564
PagI TCATGA 1 cut(s) 709
PaqCI CACCTGC 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 843
PctI GAATGC 1 cut(s) 785
PdmI GAANNNNTTC 1 cut(s) 962
PfeI GAWTC 4 cut(s) 76, 424, 732, 1141
PflMI CCANNNNNTGG 1 cut(s) 1064
PkrI GCNGC 5 cut(s) 49, 127, 136, 202, 328
PleI GAGTC 1 cut(s) 644
PpsI GAGTC 1 cut(s) 644
Psp6I CCWGG 2 cut(s) 823, 1135
PspFI CCCAGC 3 cut(s) 419, 551, 1167
PspGI CCWGG 2 cut(s) 823, 1135
PspN4I GGNNCC 3 cut(s) 224, 1209, 1348
PstI CTGCAG 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 2 cut(s) 676, 898
RsaNI GTAC 2 cut(s) 675, 897
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 4 cut(s) 119, 920, 950, 1043
SatI GCNGC 5 cut(s) 48, 126, 135, 201, 327
Sau3AI GATC 2 cut(s) 147, 1005
ScaI AGTACT 2 cut(s) 676, 898
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 2 cut(s) 825, 1137
SduI GDGCHC 1 cut(s) 727
SfaNI GCATC 3 cut(s) 263, 406, 484
SfcI CTRYAG 1 cut(s) 123
Sfr274I CTCGAG 1 cut(s) 564
SlaI CTCGAG 1 cut(s) 564
SmlI CTYRAG 4 cut(s) 138, 231, 564, 699
SmoI CTYRAG 4 cut(s) 138, 231, 564, 699
SpeI ACTAGT 2 cut(s) 887, 1369
SspMI CTAG 4 cut(s) 206, 278, 888, 1370
StyD4I CCNGG 2 cut(s) 823, 1135
TaaI ACNGT 3 cut(s) 368, 601, 896
TaiI ACGT 2 cut(s) 289, 1341
TaqI TCGA 3 cut(s) 100, 565, 841
TatI WGTACW 2 cut(s) 674, 896
TfiI GAWTC 4 cut(s) 76, 424, 732, 1141
Tru1I TTAA 4 cut(s) 119, 920, 950, 1043
Tru9I TTAA 4 cut(s) 119, 920, 950, 1043
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 5 cut(s) 47, 125, 134, 200, 326
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 7 cut(s) 17, 83, 237, 350, 562, 955, 1371
Van91I CCANNNNNTGG 1 cut(s) 1064
XapI RAATTY 4 cut(s) 828, 1281, 1299, 1328
XcmI CCANNNNNNNNNTGG 1 cut(s) 1340
XhoI CTCGAG 1 cut(s) 564
XmnI GAANNNNTTC 1 cut(s) 962
XspI CTAG 4 cut(s) 206, 278, 888, 1370
ZrmI AGTACT 2 cut(s) 676, 898
Zsp2I ATGCAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.