Rh5AG078700

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
6727964 .. 6731109
3146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG078700.1

Sequence Viewer

Length: 2868 bp
ATGTCTTCTCCCTCTGCAAACCTTTACAAAGTCAAAACGATTTGGCTCTTGTCTTCTCTGCTTATCTATTTGTCCATCATTCTCTCCAATGGAGTTGCAGCTCAAAATGATATCAGTGTCACAAACGTTGGAGCAATCATTGATCTTAATTCTCGTATCGGCAAAGAGCAGAAAGTTGCCATGGAAATTGCAGCTGAAAGCTTCAACAACAAGTCCAGCACTCATGAACTAATCCTTCATTTTCGAAACTCACTCGGAGAACCCTTTCTTGCTGCTTCTGATGCTGAAGAGTTGATAAAGGAAGAAAAAGTACAAGTGATTGTTGGCATGGAGTATTGGCCAGAAGCAGTTCAAGTAGCTGATCATGTTAAAAACCAATCTCAAGTTGTTCCGGTAGTTTCATTTGGTGCACCTCTTATAACTCCACCAATAATCCAACACCGGTGGCCTTTCTTGATACGAATGACAAGCGATGGATCAGCTCAAATGAAATGCATTGCAGACATAGTTGCTGCATACAATTGGAAAAGGGTTGTTGTGATATATGAAGACGATGGTTATGGTGGTTATGTTGGATTGCTATCTCTTTTGTCTGAGGCTCTTCAAGATGCTAATGCAAAGATTGAGAATCATTTGGTTCTTCCGAGACTAAATAATTCTTCGGAGTCTAAGCCTGATTGGGATGAAGTAGAAGAGCTGTTGAAGCTTCCCACCTTTCAGTCTCGGGTGTTTATTGTTCTTCAATCATCTTTACCAACAGTGACTAATCTGTTCAGAGTGGCTAAGAAGATGGGACTTGTAGGGAGAGAGTCAGCTTGGATATTCACAGAATGTATCACTAGTCTGCTTAACCCTCAAGGTAACTACGATATGGAAGGATCTCTGGGAATCAAGACCTACTACCCCACTGAGTCTAGTTCTTATGCCGAATTCCAGAAGGAATTCCAAGCTAAGTATGCAGAAGGAAATAACTCCAAGCCAGGAATTTATACTCTTCGAGCGTACGATACTGTTAATGTCATTTCACAGGCCATAGAAAGAATGCCTAATAACACCGCTAGTACTAGCCTTCAAGATATGATAACTAGATTGTTGAGCAATTACAAGGGTTTAAGTGGGGATATGCACTTCAATAAAGGTGAAGCACTGTTGGATTCTCCTAGACTGAGGATTGCAAATGTTGTGGATGGGAAGATGAACAGAGACTTAAACTTTTGGACACCAAATGTTGGGTTCTCAAAAGGCCTTGACACAAATAGAGTTGATGTTGTTGGTAAAGTAATTTGGCCTGGGAACCTAAGCCGTACCCCAAAAGGATGGGCAATGCCTAGTGTTGAAAAGCCAATGATAATTGGGGTTCCAGGTAAAACTTCCTTCAGCAAATTTGTAAAGGTGGAGTATAAGGACAATCCTGATGAGAATACATATGATGGTTTCTGCATTCAAATTTTCTATAAGGTTTTAAGTCGTTTGAATTATCCTCTGCCGTACGAGTTTCAGGCTCACAATGGAACCTATGATGAACTGGTTGAAAAAGTCCATAACAAGGTAACAACTTTATCTTCACTTCTTTTGTCTGTTTTTATCACATTTGATCTGTTACTGATAAAAAATGTATGCTTGTCATGTCCGTCAATATGTGAACCGAAGATCTATGATGCTGTTGTTGGTGATATAACCGTTCTAGCTGACAGAATGGACAAGGTGGAATTCACTCAGCCCTATATGGGGTCAGGTTTGTCAATGATAGTACCAAAAGTAACTGATGAGGAGGCAACATGGATGTTTATGAAACCTTTTACATGGGACATGTGGGTGGTGACCAGTTCCATTTTAATCTACACAATGTTGGTAGTATGGTTCCTAGAGCGGCCAACCAATCCCGAATTTGGTGGTCCATTGAAGGATCAAATTGGTACAGCAATTTGGTTCACCTTCTCCTCTTTATTCTTTGCTCACAGAGAAAAAGTCTATAGCAACTTAACTCGAGTAGTTTTTATTGTATGGCTGTTTGTTGTATTGATCCTAACCTCAAGCTACACTGCTAATCTCTCTTCAATGCTCACCGTTCAACGACTGAAACCAAATGTAACAGACATCGAAATGCTAAAAAGAACCAATGCAATAGTTGGTTTGGATGGGGATTCATTCGTGTACAAATACATGGTGGAGGTTCTTGAATTCAAGGAAGTTAACTTGATGAACATATCGAGCGAATACGACTATACAGGCTACTTCAAAAACAAAACAATATTAGCTGCCTTTCTCGAAATCCCCTATGCTGAAGTATTCTTGAACAAGTATTGTGATGGATATACTGATAACACTCCTCCCAATAGATTTGGAGGCTTAAGCTTTATGTTTCAGAAAGGCTCTCCCATTGCCAGGGATTTCACTATGGCCATATTAGAGCTATTGGAGAATGGAGAGATTAAGAAACTTCAAAATGAGTGGCTGTCGCCGGAGGAGGAGTGCACGAAGAATTCAACTTCCAATCGACCAGAAAGCTTAAGCCTCGACAGCTTTTCTGGCCTCTATGTAATATCCGGTGCTACTTCTACCTTCTGCTTTCTACTATCTCTTGCTATCTGGCTGAGGAGGTTTCAGCTCCAAGAAACAAATGAAGGCAATGCAAGTCCAAGTAATGAAAATATTTGGAACAAAACTGTCAGAATAGTAAAGTTTTTCAAACTTAGAGATCTTGAAATTCCAAATAGATCTCCAACTTTTGCTAGTTATATTGTGGATTGGACTACTCCAAGGTGGGGAGATTACTCGCCTACCTCCAACACTCCTGAGCAGCCTCCATTGTTCACTCCAGCAGAGATCGAATGCACTCCAGTAGAACATACAGAAACAAGGGTTTAG

Protein Analysis

955

Amino Acids

107.91

Weight (kDa)

5.28

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 53 - 378 2.1e-13 Periplasmic binding protein
ANF_receptor PF01094 58 - 382 4.5e-38 Receptor family ligand binding region
SBP_bac_3 PF00497 552 - 820 4.5e-07 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 601 - 851 3.2e-32 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 419
AccB7I CCANNNNNTGG 1 cut(s) 1229
AccBSI CCGCTC 1 cut(s) 1870
AciI CCGC 2 cut(s) 1056, 1870
AclI AACGTT 1 cut(s) 126
AclWI GGATC 4 cut(s) 484, 886, 1914, 2017
AcoI YGGCCR 3 cut(s) 338, 1871, 2400
AcuI CTGAAG 3 cut(s) 306, 1360, 2304
AfaI GTAC 8 cut(s) 312, 1004, 1063, 1306, 1490, 1752, 1918, 2156
AfiI CCNNNNNNNGG 7 cut(s) 1229, 1546, 1727, 1728, 1889, 2385, 2765
AflII CTTAAG 2 cut(s) 2350, 2509
AflIII ACRYGT 1 cut(s) 1809
AgeI ACCGGT 1 cut(s) 441
AhlI ACTAGT 1 cut(s) 839
AjnI CCWGG 4 cut(s) 979, 1288, 1360, 2384
Alw21I GWGCWC 2 cut(s) 412, 2477
Alw26I GTCTC 3 cut(s) 640, 726, 1197
Alw44I GTGCAC 2 cut(s) 408, 2473
AlwI GGATC 4 cut(s) 484, 886, 1914, 2017
Ama87I CYCGRG 2 cut(s) 723, 1986
AoxI GGCC 8 cut(s) 338, 446, 1029, 1243, 1286, 1871, 2400, 2530
ApaLI GTGCAC 2 cut(s) 408, 2473
ApeKI GCWGC 6 cut(s) 98, 191, 272, 512, 2258, 2800
AsiGI ACCGGT 1 cut(s) 441
Asp700I GAANNNNTTC 3 cut(s) 264, 348, 941
AspS9I GGNCC 1 cut(s) 1895
AsuHPI GGTGA 5 cut(s) 1151, 1682, 1831, 1924, 2056
AsuII TTCGAA 1 cut(s) 244
AvaI CYCGRG 2 cut(s) 723, 1986
AvaII GGWCC 1 cut(s) 1895
BaeGI GKGCMC 2 cut(s) 412, 2477
BalI TGGCCA 2 cut(s) 340, 2402
BarI GAAGNNNNNNTAC 2 cut(s) 294, 326
BbsI GAAGAC 2 cut(s) 45, 555
Bbv12I GWGCWC 2 cut(s) 412, 2477
BbvCI CCTCAGC 1 cut(s) 2594
BbvI GCAGC 6 cut(s) 110, 203, 259, 499, 2245, 2812
BccI CCATC 9 cut(s) 83, 467, 548, 784, 1181, 1311, 1424, 2132, 2303
BceAI ACGGC 2 cut(s) 1287, 1471
BciT130I CCWGG 4 cut(s) 981, 1290, 1362, 2386
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 3 cut(s) 640, 726, 1197
BcuI ACTAGT 1 cut(s) 839
BfmI CTRYAG 1 cut(s) 1972
BfrI CTTAAG 2 cut(s) 2350, 2509
BglII AGATCT 3 cut(s) 1650, 2698, 2717
BisI GCNGC 7 cut(s) 99, 192, 273, 513, 1871, 2259, 2801
BlsI GCNGC 7 cut(s) 100, 193, 274, 514, 1872, 2260, 2802
BmcAI AGTACT 1 cut(s) 1063
Bme1390I CCNGG 4 cut(s) 981, 1290, 1362, 2386
Bme18I GGWCC 1 cut(s) 1895
BmeT110I CYCGRG 2 cut(s) 723, 1986
BmgT120I GGNCC 1 cut(s) 1895
BmiI GGNNCC 4 cut(s) 1295, 1359, 1513, 1862
BmrFI CCNGG 4 cut(s) 981, 1290, 1362, 2386
BmsI GCATC 3 cut(s) 271, 598, 1648
BpiI GAAGAC 2 cut(s) 45, 555
BpmI CTGGAG 2 cut(s) 2802, 2823
Bpu10I CCTNAGC 3 cut(s) 1298, 2594, 2796
Bpu14I TTCGAA 1 cut(s) 244
BpuEI CTTGAG 3 cut(s) 366, 840, 2017
BsaBI GATNNNNATC 1 cut(s) 580
BsaJI CCNNGG 4 cut(s) 180, 1289, 2385, 2759
BsaWI WCCGGW 3 cut(s) 391, 441, 2546
BsaXI ACNNNNNCTCC 2 cut(s) 2456, 2486
Bsc4I CCNNNNNNNGG 7 cut(s) 1229, 1546, 1727, 1728, 1889, 2385, 2765
Bse118I RCCGGY 1 cut(s) 441
Bse1I ACTGG 3 cut(s) 1530, 1824, 2840
Bse3DI GCAATG 4 cut(s) 495, 1329, 2379, 2635
Bse8I GATNNNNATC 1 cut(s) 580
BseBI CCWGG 4 cut(s) 981, 1290, 1362, 2386
BseDI CCNNGG 4 cut(s) 180, 1289, 2385, 2759
BseGI GGATG 5 cut(s) 688, 1192, 1322, 1788, 2143
BseJI GATNNNNATC 1 cut(s) 580
BseLI CCNNNNNNNGG 7 cut(s) 1229, 1546, 1727, 1728, 1889, 2385, 2765
BseMI GCAATG 4 cut(s) 495, 1329, 2379, 2635
BseMII CTCAG 6 cut(s) 585, 900, 1157, 1730, 2585, 2787
BseNI ACTGG 3 cut(s) 1530, 1824, 2840
BseRI GAGGAG 6 cut(s) 1784, 1930, 2319, 2480, 2483, 2611
BseSI GKGCMC 2 cut(s) 412, 2477
BseXI GCAGC 6 cut(s) 110, 203, 259, 499, 2245, 2812
BshFI GGCC 8 cut(s) 340, 448, 1031, 1245, 1288, 1873, 2402, 2532
BshTI ACCGGT 1 cut(s) 441
BsiHKAI GWGCWC 2 cut(s) 412, 2477
BsiHKCI CYCGRG 2 cut(s) 723, 1986
BsiSI CCGG 4 cut(s) 392, 442, 2462, 2547
BsiWI CGTACG 2 cut(s) 1002, 1488
BslFI GGGAC 2 cut(s) 807, 1820
BslI CCNNNNNNNGG 7 cut(s) 1229, 1546, 1727, 1728, 1889, 2385, 2765
BsmAI GTCTC 3 cut(s) 640, 726, 1197
BsmFI GGGAC 2 cut(s) 807, 1820
BsmI GAATGC 3 cut(s) 1047, 1440, 2837
BsnI GGCC 8 cut(s) 340, 448, 1031, 1245, 1288, 1873, 2402, 2532
BsoBI CYCGRG 2 cut(s) 723, 1986
Bsp119I TTCGAA 1 cut(s) 244
Bsp1286I GDGCHC 2 cut(s) 412, 2477
Bsp1407I TGTACA 1 cut(s) 2154
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 2 cut(s) 1056, 1870
BspANI GGCC 8 cut(s) 340, 448, 1031, 1245, 1288, 1873, 2402, 2532
BspCNI CTCAG 6 cut(s) 586, 901, 1158, 1729, 2586, 2788
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 4 cut(s) 1295, 1359, 1513, 1862
BspPI GGATC 4 cut(s) 484, 886, 1914, 2017
BspQI GCTCTTC 2 cut(s) 606, 687
BspT104I TTCGAA 1 cut(s) 244
BspTI CTTAAG 2 cut(s) 2350, 2509
BsrBI CCGCTC 1 cut(s) 1870
BsrDI GCAATG 4 cut(s) 495, 1329, 2379, 2635
BsrFI RCCGGY 1 cut(s) 441
BsrGI TGTACA 1 cut(s) 2154
BsrI ACTGG 3 cut(s) 1530, 1824, 2840
BssAI RCCGGY 1 cut(s) 441
BssECI CCNNGG 4 cut(s) 180, 1289, 2385, 2759
BssT1I CCWWGG 2 cut(s) 180, 2759
Bst2UI CCWGG 4 cut(s) 981, 1290, 1362, 2386
Bst4CI ACNGT 6 cut(s) 760, 1012, 1149, 1681, 2068, 2668
Bst6I CTCTTC 5 cut(s) 282, 606, 687, 999, 2059
BstAFI CTTAAG 2 cut(s) 2350, 2509
BstAUI TGTACA 1 cut(s) 2154
BstBI TTCGAA 1 cut(s) 244
BstDSI CCRYGG 1 cut(s) 180
BstEII GGTNACC 1 cut(s) 1819
BstF5I GGATG 5 cut(s) 688, 1192, 1322, 1788, 2143
BstMAI GTCTC 3 cut(s) 640, 726, 1197
BstMWI GCNNNNNNNGC 5 cut(s) 281, 703, 956, 2520, 2529
BstNI CCWGG 4 cut(s) 981, 1290, 1362, 2386
BstNSI RCATGY 1 cut(s) 1813
BstPI GGTNACC 1 cut(s) 1819
BstSCI CCNGG 4 cut(s) 979, 1288, 1360, 2384
BstSFI CTRYAG 1 cut(s) 1972
BstSLI GKGCMC 2 cut(s) 412, 2477
BstV1I GCAGC 6 cut(s) 110, 203, 259, 499, 2245, 2812
BstV2I GAAGAC 2 cut(s) 45, 555
BstX2I RGATCY 4 cut(s) 878, 1650, 2698, 2717
BstXI CCANNNNNNTGG 1 cut(s) 1317
BstYI RGATCY 4 cut(s) 878, 1650, 2698, 2717
BsuRI GGCC 8 cut(s) 340, 448, 1031, 1245, 1288, 1873, 2402, 2532
BtgI CCRYGG 1 cut(s) 180
BtgZI GCGATG 1 cut(s) 486
BtsCI GGATG 5 cut(s) 688, 1192, 1322, 1788, 2143
BtsI GCAGTG 1 cut(s) 2040
BtsIMutI CAGTG 5 cut(s) 121, 765, 906, 1145, 2040
CciI TCATGA 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 1895
Csp6I GTAC 8 cut(s) 311, 1003, 1062, 1305, 1489, 1751, 1917, 2155
CspAI ACCGGT 1 cut(s) 441
CspCI CAANNNNNGTGG 6 cut(s) 425, 460, 1164, 1199, 2432, 2467
CviAII CATG 9 cut(s) 181, 224, 328, 365, 1626, 1779, 1803, 1810, 2164
CviQI GTAC 8 cut(s) 311, 1003, 1062, 1305, 1489, 1751, 1917, 2155
EaeI YGGCCR 3 cut(s) 338, 1871, 2400
Eam1104I CTCTTC 5 cut(s) 282, 606, 687, 999, 2059
EarI CTCTTC 5 cut(s) 282, 606, 687, 999, 2059
Eco130I CCWWGG 2 cut(s) 180, 2759
Eco147I AGGCCT 1 cut(s) 1245
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 1895
Eco57I CTGAAG 3 cut(s) 306, 1360, 2304
Eco88I CYCGRG 2 cut(s) 723, 1986
Eco91I GGTNACC 1 cut(s) 1819
EcoO65I GGTNACC 1 cut(s) 1819
EcoRI GAATTC 5 cut(s) 929, 941, 1709, 2180, 2482
EcoRII CCWGG 4 cut(s) 979, 1288, 1360, 2384
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 180, 2759
EcoT22I ATGCAT 1 cut(s) 497
ErhI CCWWGG 2 cut(s) 180, 2759
FaeI CATG 9 cut(s) 184, 227, 331, 368, 1629, 1782, 1806, 1813, 2167
FaqI GGGAC 2 cut(s) 807, 1820
FatI CATG 9 cut(s) 180, 223, 327, 364, 1625, 1778, 1802, 1809, 2163
FauNDI CATATG 1 cut(s) 1426
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 7 cut(s) 99, 192, 273, 513, 1871, 2259, 2801
FokI GGATG 5 cut(s) 695, 1199, 1329, 1795, 2150
Fsp4HI GCNGC 7 cut(s) 99, 192, 273, 513, 1871, 2259, 2801
GluI GCNGC 7 cut(s) 99, 192, 273, 513, 1871, 2259, 2801
GsuI CTGGAG 2 cut(s) 2802, 2823
HaeIII GGCC 8 cut(s) 340, 448, 1031, 1245, 1288, 1873, 2402, 2532
HapII CCGG 4 cut(s) 392, 442, 2462, 2547
Hin1II CATG 9 cut(s) 184, 227, 331, 368, 1629, 1782, 1806, 1813, 2167
HincII GTYRAC 1 cut(s) 2194
HindII GTYRAC 1 cut(s) 2194
HindIII AAGCTT 4 cut(s) 199, 704, 2353, 2506
HinfI GANTC 7 cut(s) 628, 665, 809, 888, 911, 1154, 2144
HpaI GTTAAC 1 cut(s) 2194
HpaII CCGG 4 cut(s) 392, 442, 2462, 2547
HphI GGTGA 5 cut(s) 1151, 1682, 1831, 1924, 2056
Hpy166II GTNNAC 7 cut(s) 410, 1643, 1932, 2155, 2194, 2475, 2814
Hpy188I TCNGA 8 cut(s) 257, 280, 595, 645, 664, 776, 2367, 2672
Hpy8I GTNNAC 7 cut(s) 410, 1643, 1932, 2155, 2194, 2475, 2814
HpyCH4III ACNGT 6 cut(s) 760, 1012, 1149, 1681, 2068, 2668
HpyCH4IV ACGT 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 5 cut(s) 281, 703, 956, 2520, 2529
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 9 cut(s) 184, 227, 331, 368, 1629, 1782, 1806, 1813, 2167
Ksp22I TGATCA 1 cut(s) 361
KspAI GTTAAC 1 cut(s) 2194
LguI GCTCTTC 2 cut(s) 606, 687
LmnI GCTCC 2 cut(s) 131, 2613
Lsp1109I GCAGC 6 cut(s) 110, 203, 259, 499, 2245, 2812
LweI GCATC 3 cut(s) 271, 598, 1648
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 8 cut(s) 118, 760, 860, 1549, 1599, 1759, 1819, 2089
MbiI CCGCTC 1 cut(s) 1870
MfeI CAATTG 1 cut(s) 520
MflI RGATCY 4 cut(s) 878, 1650, 2698, 2717
MhlI GDGCHC 2 cut(s) 412, 2477
MlsI TGGCCA 2 cut(s) 340, 2402
MluNI TGGCCA 2 cut(s) 340, 2402
MlyI GAGTC 3 cut(s) 674, 818, 920
MmeI TCCRAC 6 cut(s) 109, 460, 553, 1131, 2747, 2811
Mox20I TGGCCA 2 cut(s) 340, 2402
Mph1103I ATGCAT 1 cut(s) 497
MroXI GAANNNNTTC 3 cut(s) 264, 348, 941
MscI TGGCCA 2 cut(s) 340, 2402
MslI CAYNNNNRTG 2 cut(s) 1814, 2102
Msp20I TGGCCA 2 cut(s) 340, 2402
MspA1I CMGCKG 1 cut(s) 194
MspCI CTTAAG 2 cut(s) 2350, 2509
MspI CCGG 4 cut(s) 392, 442, 2462, 2547
MspR9I CCNGG 4 cut(s) 981, 1290, 1362, 2386
MunI CAATTG 1 cut(s) 520
Mva1269I GAATGC 3 cut(s) 1047, 1440, 2837
MvaI CCWGG 4 cut(s) 981, 1290, 1362, 2386
MwoI GCNNNNNNNGC 5 cut(s) 281, 703, 956, 2520, 2529
NcoI CCATGG 1 cut(s) 180
NdeI CATATG 1 cut(s) 1426
NlaIII CATG 9 cut(s) 184, 227, 331, 368, 1629, 1782, 1806, 1813, 2167
NlaIV GGNNCC 4 cut(s) 1295, 1359, 1513, 1862
NmuCI GTSAC 3 cut(s) 118, 760, 1819
NsiI ATGCAT 1 cut(s) 497
NspI RCATGY 1 cut(s) 1813
NspV TTCGAA 1 cut(s) 244
PaeR7I CTCGAG 1 cut(s) 1986
PagI TCATGA 1 cut(s) 223
PceI AGGCCT 1 cut(s) 1245
PciI ACATGT 1 cut(s) 1809
PciSI GCTCTTC 2 cut(s) 606, 687
PctI GAATGC 3 cut(s) 1047, 1440, 2837
PdmI GAANNNNTTC 3 cut(s) 264, 348, 941
PfeI GAWTC 4 cut(s) 628, 888, 1154, 2144
Pfl23II CGTACG 2 cut(s) 1002, 1488
PflMI CCANNNNNTGG 1 cut(s) 1229
PinAI ACCGGT 1 cut(s) 441
PkrI GCNGC 7 cut(s) 100, 193, 274, 514, 1872, 2260, 2802
PleI GAGTC 3 cut(s) 673, 817, 919
PpsI GAGTC 3 cut(s) 673, 817, 919
PscI ACATGT 1 cut(s) 1809
PsiI TTATAA 1 cut(s) 419
Psp1406I AACGTT 1 cut(s) 126
Psp6I CCWGG 4 cut(s) 979, 1288, 1360, 2384
PspEI GGTNACC 1 cut(s) 1819
PspGI CCWGG 4 cut(s) 979, 1288, 1360, 2384
PspLI CGTACG 2 cut(s) 1002, 1488
PspN4I GGNNCC 4 cut(s) 1295, 1359, 1513, 1862
PspPI GGNCC 1 cut(s) 1895
PspXI VCTCGAGB 1 cut(s) 1986
PsuI RGATCY 4 cut(s) 878, 1650, 2698, 2717
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 8 cut(s) 312, 1004, 1063, 1306, 1490, 1752, 1918, 2156
RsaNI GTAC 8 cut(s) 311, 1003, 1062, 1305, 1489, 1751, 1917, 2155
RseI CAYNNNNRTG 2 cut(s) 1814, 2102
SapI GCTCTTC 2 cut(s) 606, 687
SatI GCNGC 7 cut(s) 99, 192, 273, 513, 1871, 2259, 2801
Sau96I GGNCC 1 cut(s) 1895
ScaI AGTACT 1 cut(s) 1063
SchI GAGTC 3 cut(s) 674, 818, 920
ScrFI CCNGG 4 cut(s) 981, 1290, 1362, 2386
SduI GDGCHC 2 cut(s) 412, 2477
SfaNI GCATC 3 cut(s) 271, 598, 1648
SfcI CTRYAG 1 cut(s) 1972
Sfr274I CTCGAG 1 cut(s) 1986
SfuI TTCGAA 1 cut(s) 244
SgrAI CRCCGGYG 1 cut(s) 441
SinI GGWCC 1 cut(s) 1895
SlaI CTCGAG 1 cut(s) 1986
SmiMI CAYNNNNRTG 2 cut(s) 1814, 2102
SmlI CTYRAG 6 cut(s) 381, 855, 1986, 2032, 2350, 2509
SmoI CTYRAG 6 cut(s) 381, 855, 1986, 2032, 2350, 2509
SpeI ACTAGT 1 cut(s) 839
SseBI AGGCCT 1 cut(s) 1245
SsiI CCGC 2 cut(s) 1056, 1870
SspI AATATT 2 cut(s) 2253, 2653
StuI AGGCCT 1 cut(s) 1245
StyD4I CCNGG 4 cut(s) 979, 1288, 1360, 2384
StyI CCWWGG 2 cut(s) 180, 2759
TaaI ACNGT 6 cut(s) 760, 1012, 1149, 1681, 2068, 2668
TaiI ACGT 1 cut(s) 129
TaqI TCGA 9 cut(s) 244, 997, 1987, 2100, 2210, 2268, 2497, 2517, 2829
TatI WGTACW 3 cut(s) 310, 1061, 2154
TauI GCSGC 1 cut(s) 1873
TfiI GAWTC 4 cut(s) 628, 888, 1154, 2144
TscAI CASTG 5 cut(s) 121, 765, 913, 1152, 2047
TseFI GTSAC 3 cut(s) 118, 760, 1819
TseI GCWGC 6 cut(s) 98, 191, 272, 512, 2258, 2800
Tsp45I GTSAC 3 cut(s) 118, 760, 1819
TspGWI ACGGA 1 cut(s) 1620
TspRI CASTG 5 cut(s) 121, 765, 913, 1152, 2047
Van91I CCANNNNNTGG 1 cut(s) 1229
Vha464I CTTAAG 2 cut(s) 2350, 2509
VneI GTGCAC 2 cut(s) 408, 2473
VpaK11BI GGWCC 1 cut(s) 1895
XceI RCATGY 1 cut(s) 1813
XhoI CTCGAG 1 cut(s) 1986
XmnI GAANNNNTTC 3 cut(s) 264, 348, 941
ZrmI AGTACT 1 cut(s) 1063
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.