Rw5G007320

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
7776173 .. 7789751
13579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G007320.1

Sequence Viewer

Length: 2721 bp
ATGGCTTTTCCTTGTAAGTTGACCTTTAACAAAATCGAAAGACTTTGGCATCTGCTTCCTCTGCTCATCATAATCATCATTATCACTGTCTCTGATAGAGCTGAAGCTGAAAATGAGAAAATTGTCACCAATCTTGGAGCAATCGTTAATCTGAATTCTCGTATGGGCAAAGAACAGAAAACTGCTATGGATATTGCAGCTGAAAACTTCAGCAACCTTTCAAAGACTCATAGCCTAATCATTCATTTTCGACATTCTGACAGAGATCCCTTTACAGCTGCTTCTGCTGCTGAAGAGTTGATAAAGGAGAAGAAAGTAAAAGTGCTAATTGGCATGGAGACTTGGCAGGAAGCAGTTCAAGTAGCTGATGTGGGGAACCGAGCTCAAGTTCCAGTGATTTCATTTGCAGCACCTACTATAACCCCACCTCTCATCCAACGCAAGTGGCCATTTTTGATACGAGTGGCAAGCGATGTGGGTGCTCAGATCAAATGCATTGCAGATATAGTTTCTTTGTACAGTTGGAAAAGGGTAATTGCAATATACGAGGATGATGGTTATGGTGGTAATGCTGGGATGCTAGCTCTTTTATTTGAGTCACTCCAAGACGTTGGTTCAAAGATTGAGCATCATTTGGTTCTCCCACGGGTTTCTTCTATGTCTAATCCTGATTGGGGTGAACTAGAGGAGATGCTGAAGCTTCCCAGCTTTCAGTCTCGGGTCTTCATTGTTCTTCAGTCATCTTTACCAACAGTGACTAATCTGTTCAGGGTGGCGAAGAAGATGGGACTTGTAGGAAGAGACTCGGCTTGGATAATCACAGAGAGTATTAAGAGTTTACTTGACCCTCAAGTCAATCACGATATGGAAGGTACTCTGGGAATCAAGACCTACTATGCCAATAATACCAGTTCCTATGTCAAGTTCAGCAAGTTATTTCGAAAAAAGTATCCAGAGAAAAATAACTCCGAGCCAGGAATATATGCTCTTCGAGCTTACGATCTAACTAGAATCGTAACTCAGGCCATAGGAATGACTGGTAACAGTACCACTAACCTTCAGGTAGTGTTGAATACAGTGTTAAGCAATTACATGGGTTTAAGCGGGAAAATGGGCTTCCAAGGAGGTGAAGTGTTGTACTCTCCAATATTCAGGATCATAAATGTTGTGGAAGGGAACAGGTACAAAGAGTTGGACTTTTGGAGACCAGAGATTGGATTCTCAGAAAGCCTTGCACAACAAACAAGCATAAACAGAACAGATGGTGTTGGTACAGTTGTTTGGCCCGGGAATCTAAGCCAACGAGCCCCCAAAGGCTGGGCAATGCCTACTGCTGATAAGCCAATGATAATTGGGGTTCCTAATGGTTCCTTCCCCGAATTTGTAAACCTTAGTTCGGATGGAAAGAAAGTTGACGGTTTCTGCATTGAGCTTTTCAAAACGGTGGTAAATTGTTTGAATTATCCTCTGCCATTCGAAGTCCGATACGTTAATTGCCCCTATGATGATTTGGTGGAACTAGTCCATAACAAGACTTTCGGTGTTGGTGATATCACCATAATAGCAGAGCGAGTGGACAAAGTGGAATTCACTCAGCCATATACCGAGTCTAGTTTGTCAATAATAGTTCCAGAAAAAGCTGAGCAATTAGATGAGTGGATGTTTATGAAACCTTTCACCTGGAAAATGTGGGCGGCAACTGGTGGCATATTAGTCTACACAATCTTGATTATATGGTTTTTGGAGCGCCTTGCTAATCCAGAATTCAGTGGCCCAGTGATGAATCAGATTGGCACAGCAACTTGGTTCGCCTTCACCTCTTTGTTCTTTTCTCACAGAGAGAAAATCTATAACAACTTAACTCGAGTAGTTGTTGTAATGTGGTTATTTGTTGTATTGATCCTAACCTCAAGCTACACCGCTAATCTATCATCAATGCTCACCATTCAACGATTGAAACCAAATGCAACAGACATCGAAATGCTAATAAGAACTAACTCAACAGTTGGCTCGAATAGGGATTCATTTGTCGTCAATTACTTGAAGAATGTTGGCTTCAATCGAGAGAACATCATCAAAACAGACAGGGAATCCAACTTCATTGAGGAGTTCGAAAGTAAACGTATATCTGCTGCCTTGCTTGAACTCCCATATGCCAAAGTATTCATGAACAAGTACTGCAAGGGATATACTGCGACCACACTACCCTTCTATAGATTCGGGGGACTAGCATTTATATTTCAGAAAGGCTCTCCAATTGCCCAAGATTTCACCAAGGCCATTCTAGAGTTATTGGAGGATGGAGAACTGAAGTTACTTGAAGGTACTTGGTTGACAACGAAACATGACTGTCCAAGCAATGCAACTTCCGATGTTCCAGAAAGCTTGAACGTCAAGAATTTTATGGGCCTTTATGTAACATCCACATCTACTTCCACCATTTGCCTTCTATTATCCTTCACTATCTTGCTGAATAAGTTTCAACAACACCAAAATGCGTACCACGGCAATGCAAGTGATGAAAGTGTTTGGAACAGAACATTTATTATAGCAAGATTCCTATATAATAGAGAGTTCAATATTCCAAGCAAAGCTCCAAGTTTTGTTGATGTGCTGGAATTAACTTCTTCCCAAGGGGAGCAGGTGATCACTTCCACCCCTCGGGAGCATCAACTTCAGGCCTCCATCCCCGCACAAACTGAAGGCAATCCGCCACATTAA

Protein Analysis

906

Amino Acids

101.96

Weight (kDa)

6.58

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 60 - 389 1.5e-34 Receptor family ligand binding region
Peripla_BP_6 PF13458 88 - 356 2e-14 Periplasmic binding protein
SBP_bac_3 PF00497 456 - 779 6.2e-13 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 560 - 807 1.7e-28 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2632
AasI GACNNNNNNGTC 1 cut(s) 851
Acc36I ACCTGC 1 cut(s) 2632
AccB7I CCANNNNNTGG 2 cut(s) 1214, 1317
AccI GTMKAC 1 cut(s) 1716
AciI CCGC 5 cut(s) 1104, 1694, 1920, 2691, 2711
AclWI GGATC 3 cut(s) 260, 1163, 1894
AcoI YGGCCR 1 cut(s) 446
AcsI RAATTY 5 cut(s) 154, 1379, 1586, 1763, 2398
AcuI CTGAAG 9 cut(s) 123, 193, 312, 716, 719, 1043, 2330, 2660, 2721
AfaI GTAC 9 cut(s) 518, 874, 1048, 1139, 1184, 1273, 2177, 2326, 2501
AfiI CCNNNNNNNGG 5 cut(s) 674, 1214, 1317, 1396, 2661
AhlI ACTAGT 1 cut(s) 1519
AjnI CCWGG 2 cut(s) 973, 1679
Alw21I GWGCWC 2 cut(s) 385, 484
Alw26I GTCTC 5 cut(s) 94, 332, 720, 795, 1198
AlwI GGATC 3 cut(s) 260, 1163, 1894
Ama87I CYCGRG 4 cut(s) 717, 1286, 1863, 2661
AoxI GGCC 7 cut(s) 446, 1023, 1283, 1771, 2277, 2407, 2679
ApeKI GCWGC 5 cut(s) 197, 278, 287, 407, 2132
ApoI RAATTY 5 cut(s) 154, 1379, 1586, 1763, 2398
Asp700I GAANNNNTTC 2 cut(s) 354, 1673
AspLEI GCGC 1 cut(s) 1749
AspS9I GGNCC 3 cut(s) 1284, 1772, 2407
AsuC2I CCSGG 2 cut(s) 1287, 1288
AsuII TTCGAA 3 cut(s) 940, 1476, 2112
AsuNHI GCTAGC 1 cut(s) 580
AvaI CYCGRG 4 cut(s) 717, 1286, 1863, 2661
BaeI ACNNNNGTAYC 2 cut(s) 1263, 1296
BalI TGGCCA 1 cut(s) 448
BanII GRGCYC 2 cut(s) 385, 1309
BbsI GAAGAC 1 cut(s) 715
Bbv12I GWGCWC 2 cut(s) 385, 484
BbvI GCAGC 5 cut(s) 209, 265, 274, 419, 2119
BccI CCATC 6 cut(s) 548, 778, 1256, 1394, 2294, 2693
BceAI ACGGC 1 cut(s) 2521
BcgI CGANNNNNNTGC 2 cut(s) 461, 495
BciT130I CCWGG 2 cut(s) 975, 1681
BciVI GTATCC 1 cut(s) 960
BclI TGATCA 1 cut(s) 2646
BcnI CCSGG 2 cut(s) 1287, 1288
BcoDI GTCTC 5 cut(s) 94, 332, 720, 795, 1198
BcuI ACTAGT 1 cut(s) 1519
BfaI CTAG 7 cut(s) 581, 683, 1008, 1520, 1611, 2228, 2285
BfmI CTRYAG 1 cut(s) 2212
BfoI RGCGCY 1 cut(s) 1750
BfuAI ACCTGC 1 cut(s) 2632
BfuI GTATCC 1 cut(s) 960
BisI GCNGC 6 cut(s) 198, 279, 288, 408, 1695, 2133
BlpI GCTNAGC 1 cut(s) 1641
BlsI GCNGC 6 cut(s) 199, 280, 289, 409, 1696, 2134
BmcAI AGTACT 1 cut(s) 2177
Bme1390I CCNGG 4 cut(s) 975, 1287, 1288, 1681
BmeT110I CYCGRG 4 cut(s) 717, 1286, 1863, 2661
BmgT120I GGNCC 3 cut(s) 1284, 1772, 2407
BmiI GGNNCC 3 cut(s) 377, 1359, 1369
BmrFI CCNGG 4 cut(s) 975, 1287, 1288, 1681
BmrI ACTGGG 1 cut(s) 1769
BmsI GCATC 5 cut(s) 58, 567, 637, 681, 2677
BmtI GCTAGC 1 cut(s) 584
BmuI ACTGGG 1 cut(s) 1769
BpiI GAAGAC 1 cut(s) 715
Bpu1102I GCTNAGC 1 cut(s) 1641
Bpu14I TTCGAA 3 cut(s) 940, 1476, 2112
BpuEI CTTGAG 3 cut(s) 369, 834, 1894
BpuMI CCSGG 2 cut(s) 1287, 1288
BsaI GGTCTC 1 cut(s) 1198
BsaJI CCNNGG 7 cut(s) 644, 1120, 1286, 2274, 2503, 2632, 2660
BsaXI ACNNNNNCTCC 4 cut(s) 129, 159, 1116, 1146
Bsc4I CCNNNNNNNGG 5 cut(s) 674, 1214, 1317, 1396, 2661
Bse1I ACTGG 5 cut(s) 392, 909, 1042, 1705, 1775
Bse3DI GCAATG 4 cut(s) 495, 1329, 2365, 2515
BseBI CCWGG 2 cut(s) 975, 1681
BseDI CCNNGG 7 cut(s) 644, 1120, 1286, 2274, 2503, 2632, 2660
BseGI GGATG 8 cut(s) 432, 556, 582, 1405, 1665, 2305, 2420, 2685
BseLI CCNNNNNNNGG 5 cut(s) 674, 1214, 1317, 1396, 2661
BseMI GCAATG 4 cut(s) 495, 1329, 2365, 2515
BseMII CTCAG 5 cut(s) 497, 1034, 1236, 1607, 1632
BseNI ACTGG 5 cut(s) 392, 909, 1042, 1705, 1775
BseRI GAGGAG 2 cut(s) 701, 2120
BseXI GCAGC 5 cut(s) 209, 265, 274, 419, 2119
BseYI CCCAGC 3 cut(s) 572, 704, 1317
BshFI GGCC 7 cut(s) 448, 1025, 1285, 1773, 2279, 2409, 2681
BsiHKAI GWGCWC 2 cut(s) 385, 484
BsiHKCI CYCGRG 4 cut(s) 717, 1286, 1863, 2661
BsiSI CCGG 1 cut(s) 1287
BslFI GGGAC 2 cut(s) 801, 2238
BslI CCNNNNNNNGG 5 cut(s) 674, 1214, 1317, 1396, 2661
BsmAI GTCTC 5 cut(s) 94, 332, 720, 795, 1198
BsmFI GGGAC 2 cut(s) 801, 2238
BsnI GGCC 7 cut(s) 448, 1025, 1285, 1773, 2279, 2409, 2681
Bso31I GGTCTC 1 cut(s) 1198
BsoBI CYCGRG 4 cut(s) 717, 1286, 1863, 2661
Bsp119I TTCGAA 3 cut(s) 940, 1476, 2112
Bsp1286I GDGCHC 3 cut(s) 385, 484, 1309
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 6 cut(s) 265, 486, 1000, 1155, 1899, 2646
Bsp1720I GCTNAGC 1 cut(s) 1641
BspACI CCGC 5 cut(s) 1104, 1694, 1920, 2691, 2711
BspANI GGCC 7 cut(s) 448, 1025, 1285, 1773, 2279, 2409, 2681
BspCNI CTCAG 5 cut(s) 496, 1033, 1235, 1606, 1633
BspHI TCATGA 1 cut(s) 2166
BspLI GGNNCC 3 cut(s) 377, 1359, 1369
BspMI ACCTGC 1 cut(s) 2632
BspOI GCTAGC 1 cut(s) 584
BspPI GGATC 3 cut(s) 260, 1163, 1894
BspQI GCTCTTC 1 cut(s) 993
BspT104I TTCGAA 3 cut(s) 940, 1476, 2112
BspTNI GGTCTC 1 cut(s) 1198
BsrDI GCAATG 4 cut(s) 495, 1329, 2365, 2515
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 5 cut(s) 392, 909, 1042, 1705, 1775
BssECI CCNNGG 7 cut(s) 644, 1120, 1286, 2274, 2503, 2632, 2660
BssMI GATC 6 cut(s) 265, 486, 1000, 1155, 1899, 2646
BssT1I CCWWGG 3 cut(s) 1120, 2274, 2632
Bst2UI CCWGG 2 cut(s) 975, 1681
Bst6I CTCTTC 3 cut(s) 288, 793, 993
BstAUI TGTACA 1 cut(s) 516
BstBI TTCGAA 3 cut(s) 940, 1476, 2112
BstC8I GCNNGC 2 cut(s) 469, 582
BstDEI CTNAG 7 cut(s) 483, 1020, 1222, 1295, 1391, 1593, 1641
BstDSI CCRYGG 2 cut(s) 644, 2503
BstF5I GGATG 8 cut(s) 432, 556, 582, 1405, 1665, 2305, 2420, 2685
BstH2I RGCGCY 1 cut(s) 1750
BstHHI GCGC 1 cut(s) 1749
BstKTI GATC 6 cut(s) 268, 489, 1003, 1158, 1902, 2649
BstMAI GTCTC 5 cut(s) 94, 332, 720, 795, 1198
BstMBI GATC 6 cut(s) 265, 486, 1000, 1155, 1899, 2646
BstMWI GCNNNNNNNGC 4 cut(s) 61, 284, 287, 992
BstNI CCWGG 2 cut(s) 975, 1681
BstSCI CCNGG 4 cut(s) 973, 1285, 1286, 1679
BstSFI CTRYAG 1 cut(s) 2212
BstV1I GCAGC 5 cut(s) 209, 265, 274, 419, 2119
BstV2I GAAGAC 1 cut(s) 715
BstX2I RGATCY 1 cut(s) 265
BstXI CCANNNNNNTGG 1 cut(s) 611
BstYI RGATCY 1 cut(s) 265
BsuI GTATCC 1 cut(s) 960
BsuRI GGCC 7 cut(s) 448, 1025, 1285, 1773, 2279, 2409, 2681
BtgI CCRYGG 2 cut(s) 644, 2503
BtgZI GCGATG 1 cut(s) 486
BtsCI GGATG 8 cut(s) 432, 556, 582, 1405, 1665, 2305, 2420, 2685
BtsIMutI CAGTG 6 cut(s) 84, 399, 759, 1083, 1774, 1782
BveI ACCTGC 1 cut(s) 2632
Cac8I GCNNGC 2 cut(s) 469, 582
CciI TCATGA 1 cut(s) 2166
CfoI GCGC 1 cut(s) 1749
Cfr13I GGNCC 3 cut(s) 1284, 1772, 2407
Cfr9I CCCGGG 1 cut(s) 1286
Csp6I GTAC 9 cut(s) 517, 873, 1047, 1138, 1183, 1272, 2176, 2325, 2500
CspCI CAANNNNNGTGG 4 cut(s) 425, 456, 460, 491
CviAII CATG 4 cut(s) 334, 1093, 2167, 2345
CviQI GTAC 9 cut(s) 517, 873, 1047, 1138, 1183, 1272, 2176, 2325, 2500
DdeI CTNAG 7 cut(s) 483, 1020, 1222, 1295, 1391, 1593, 1641
DpnI GATC 6 cut(s) 267, 488, 1002, 1157, 1901, 2648
DpnII GATC 6 cut(s) 265, 486, 1000, 1155, 1899, 2646
DrdI GACNNNNNNGTC 1 cut(s) 851
DseDI GACNNNNNNGTC 1 cut(s) 851
EaeI YGGCCR 1 cut(s) 446
Eam1104I CTCTTC 3 cut(s) 288, 793, 993
EarI CTCTTC 3 cut(s) 288, 793, 993
EciI GGCGGA 1 cut(s) 2700
Ecl136II GAGCTC 1 cut(s) 383
Eco130I CCWWGG 3 cut(s) 1120, 2274, 2632
Eco147I AGGCCT 1 cut(s) 2681
Eco24I GRGCYC 2 cut(s) 385, 1309
Eco31I GGTCTC 1 cut(s) 1198
Eco32I GATATC 1 cut(s) 1552
Eco53kI GAGCTC 1 cut(s) 383
Eco57I CTGAAG 9 cut(s) 123, 193, 312, 716, 719, 1043, 2330, 2660, 2721
Eco88I CYCGRG 4 cut(s) 717, 1286, 1863, 2661
EcoICRI GAGCTC 1 cut(s) 383
EcoRI GAATTC 3 cut(s) 154, 1586, 1763
EcoRII CCWGG 2 cut(s) 973, 1679
EcoRV GATATC 1 cut(s) 1552
EcoT14I CCWWGG 3 cut(s) 1120, 2274, 2632
EcoT22I ATGCAT 1 cut(s) 497
EcoT38I GRGCYC 2 cut(s) 385, 1309
ErhI CCWWGG 3 cut(s) 1120, 2274, 2632
FaeI CATG 4 cut(s) 337, 1096, 2170, 2348
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FaqI GGGAC 2 cut(s) 801, 2238
FatI CATG 4 cut(s) 333, 1092, 2166, 2344
FauI CCCGC 2 cut(s) 1097, 2698
FauNDI CATATG 1 cut(s) 2152
FbaI TGATCA 1 cut(s) 2646
FblI GTMKAC 1 cut(s) 1716
Fnu4HI GCNGC 6 cut(s) 198, 279, 288, 408, 1695, 2133
FokI GGATG 8 cut(s) 419, 563, 589, 1412, 1672, 2312, 2407, 2672
FriOI GRGCYC 2 cut(s) 385, 1309
Fsp4HI GCNGC 6 cut(s) 198, 279, 288, 408, 1695, 2133
FspBI CTAG 7 cut(s) 581, 683, 1008, 1520, 1611, 2228, 2285
GlaI GCGC 1 cut(s) 1748
GluI GCNGC 6 cut(s) 198, 279, 288, 408, 1695, 2133
GsaI CCCAGC 3 cut(s) 576, 708, 1321
HaeII RGCGCY 1 cut(s) 1750
HaeIII GGCC 7 cut(s) 448, 1025, 1285, 1773, 2279, 2409, 2681
HapII CCGG 1 cut(s) 1287
HhaI GCGC 1 cut(s) 1749
Hin1II CATG 4 cut(s) 337, 1096, 2170, 2348
Hin6I GCGC 1 cut(s) 1747
HinP1I GCGC 1 cut(s) 1747
HincII GTYRAC 3 cut(s) 21, 1414, 2334
HindII GTYRAC 3 cut(s) 21, 1414, 2334
HindIII AAGCTT 2 cut(s) 698, 2383
HpaII CCGG 1 cut(s) 1287
Hpy166II GTNNAC 9 cut(s) 21, 680, 839, 1387, 1414, 1576, 1717, 2120, 2334
Hpy8I GTNNAC 9 cut(s) 21, 680, 839, 1387, 1414, 1576, 1717, 2120, 2334
HpyCH4IV ACGT 4 cut(s) 609, 1488, 2122, 2391
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 284, 287, 992
HpyF3I CTNAG 7 cut(s) 483, 1020, 1222, 1295, 1391, 1593, 1641
HpySE526I ACGT 4 cut(s) 609, 1488, 2122, 2391
Hsp92II CATG 4 cut(s) 337, 1096, 2170, 2348
HspAI GCGC 1 cut(s) 1747
Ksp22I TGATCA 1 cut(s) 2646
Kzo9I GATC 6 cut(s) 265, 486, 1000, 1155, 1899, 2646
LguI GCTCTTC 1 cut(s) 993
LmnI GCTCC 5 cut(s) 137, 1744, 2599, 2638, 2665
Lsp1109I GCAGC 5 cut(s) 209, 265, 274, 419, 2119
LweI GCATC 5 cut(s) 58, 567, 637, 681, 2677
MaeI CTAG 7 cut(s) 581, 683, 1008, 1520, 1611, 2228, 2285
MaeII ACGT 4 cut(s) 609, 1488, 2122, 2391
MaeIII GTNAC 7 cut(s) 124, 597, 754, 1015, 1040, 2313, 2416
MalI GATC 6 cut(s) 267, 488, 1002, 1157, 1901, 2648
MboI GATC 6 cut(s) 265, 486, 1000, 1155, 1899, 2646
MfeI CAATTG 1 cut(s) 2256
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 3 cut(s) 385, 484, 1309
MlsI TGGCCA 1 cut(s) 448
MluNI TGGCCA 1 cut(s) 448
MlyI GAGTC 4 cut(s) 220, 605, 797, 1616
MmeI TCCRAC 4 cut(s) 460, 503, 1173, 2118
Mox20I TGGCCA 1 cut(s) 448
Mph1103I ATGCAT 1 cut(s) 497
MroXI GAANNNNTTC 2 cut(s) 354, 1673
MscI TGGCCA 1 cut(s) 448
MseI TTAA 9 cut(s) 27, 147, 831, 1082, 1100, 1491, 1859, 2621, 2719
MslI CAYNNNNRTG 4 cut(s) 1031, 1979, 2493, 2508
Msp20I TGGCCA 1 cut(s) 448
MspA1I CMGCKG 2 cut(s) 200, 278
MspI CCGG 1 cut(s) 1287
MspR9I CCNGG 4 cut(s) 975, 1287, 1288, 1681
MunI CAATTG 1 cut(s) 2256
MvaI CCWGG 2 cut(s) 975, 1681
MwoI GCNNNNNNNGC 4 cut(s) 61, 284, 287, 992
NciI CCSGG 2 cut(s) 1287, 1288
NdeI CATATG 1 cut(s) 2152
NdeII GATC 6 cut(s) 265, 486, 1000, 1155, 1899, 2646
NheI GCTAGC 1 cut(s) 580
NlaIII CATG 4 cut(s) 337, 1096, 2170, 2348
NlaIV GGNNCC 3 cut(s) 377, 1359, 1369
NmeAIII GCCGAG 1 cut(s) 785
NmuCI GTSAC 3 cut(s) 124, 597, 754
NsiI ATGCAT 1 cut(s) 497
NspV TTCGAA 3 cut(s) 940, 1476, 2112
PaeR7I CTCGAG 1 cut(s) 1863
PagI TCATGA 1 cut(s) 2166
PaqCI CACCTGC 1 cut(s) 2632
PceI AGGCCT 1 cut(s) 2681
PciSI GCTCTTC 1 cut(s) 993
PdmI GAANNNNTTC 2 cut(s) 354, 1673
PfeI GAWTC 9 cut(s) 882, 1011, 1218, 1291, 1783, 2021, 2090, 2217, 2556
PflMI CCANNNNNTGG 2 cut(s) 1214, 1317
PkrI GCNGC 6 cut(s) 199, 280, 289, 409, 1696, 2134
PleI GAGTC 4 cut(s) 220, 604, 797, 1615
PpsI GAGTC 4 cut(s) 220, 604, 797, 1615
Psp124BI GAGCTC 1 cut(s) 385
Psp6I CCWGG 2 cut(s) 973, 1679
PspFI CCCAGC 3 cut(s) 572, 704, 1317
PspGI CCWGG 2 cut(s) 973, 1679
PspN4I GGNNCC 3 cut(s) 377, 1359, 1369
PspPI GGNCC 3 cut(s) 1284, 1772, 2407
PspXI VCTCGAGB 1 cut(s) 1863
PsrI GAACNNNNNNTAC 2 cut(s) 2298, 2330
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 2 cut(s) 200, 278
RsaI GTAC 9 cut(s) 518, 874, 1048, 1139, 1184, 1273, 2177, 2326, 2501
RsaNI GTAC 9 cut(s) 517, 873, 1047, 1138, 1183, 1272, 2176, 2325, 2500
RseI CAYNNNNRTG 4 cut(s) 1031, 1979, 2493, 2508
SacI GAGCTC 1 cut(s) 385
SapI GCTCTTC 1 cut(s) 993
SaqAI TTAA 9 cut(s) 27, 147, 831, 1082, 1100, 1491, 1859, 2621, 2719
SatI GCNGC 6 cut(s) 198, 279, 288, 408, 1695, 2133
Sau3AI GATC 6 cut(s) 265, 486, 1000, 1155, 1899, 2646
Sau96I GGNCC 3 cut(s) 1284, 1772, 2407
ScaI AGTACT 1 cut(s) 2177
SchI GAGTC 4 cut(s) 220, 605, 797, 1616
ScrFI CCNGG 4 cut(s) 975, 1287, 1288, 1681
SduI GDGCHC 3 cut(s) 385, 484, 1309
SfaNI GCATC 5 cut(s) 58, 567, 637, 681, 2677
SfcI CTRYAG 1 cut(s) 2212
Sfr274I CTCGAG 1 cut(s) 1863
SfuI TTCGAA 3 cut(s) 940, 1476, 2112
SlaI CTCGAG 1 cut(s) 1863
SmaI CCCGGG 1 cut(s) 1288
SmiMI CAYNNNNRTG 4 cut(s) 1031, 1979, 2493, 2508
SmlI CTYRAG 4 cut(s) 384, 849, 1863, 1909
SmoI CTYRAG 4 cut(s) 384, 849, 1863, 1909
SpeI ACTAGT 1 cut(s) 1519
SseBI AGGCCT 1 cut(s) 2681
SsiI CCGC 5 cut(s) 1104, 1694, 1920, 2691, 2711
SspI AATATT 2 cut(s) 1149, 2581
SspMI CTAG 7 cut(s) 581, 683, 1008, 1520, 1611, 2228, 2285
SstI GAGCTC 1 cut(s) 385
StuI AGGCCT 1 cut(s) 2681
StyD4I CCNGG 4 cut(s) 973, 1285, 1286, 1679
StyI CCWWGG 3 cut(s) 1120, 2274, 2632
TaiI ACGT 4 cut(s) 612, 1491, 2125, 2394
TatI WGTACW 3 cut(s) 516, 1137, 2175
TauI GCSGC 1 cut(s) 1697
TfiI GAWTC 9 cut(s) 882, 1011, 1218, 1291, 1783, 2021, 2090, 2217, 2556
Tru1I TTAA 9 cut(s) 27, 147, 831, 1082, 1100, 1491, 1859, 2621, 2719
Tru9I TTAA 9 cut(s) 27, 147, 831, 1082, 1100, 1491, 1859, 2621, 2719
TscAI CASTG 6 cut(s) 91, 399, 759, 1083, 1774, 1782
TseFI GTSAC 3 cut(s) 124, 597, 754
TseI GCWGC 5 cut(s) 197, 278, 287, 407, 2132
Tsp45I GTSAC 3 cut(s) 124, 597, 754
TspMI CCCGGG 1 cut(s) 1286
TspRI CASTG 6 cut(s) 91, 399, 759, 1083, 1774, 1782
Van91I CCANNNNNTGG 2 cut(s) 1214, 1317
XapI RAATTY 5 cut(s) 154, 1379, 1586, 1763, 2398
XbaI TCTAGA 1 cut(s) 2284
XhoI CTCGAG 1 cut(s) 1863
XmaI CCCGGG 1 cut(s) 1286
XmiI GTMKAC 1 cut(s) 1716
XmnI GAANNNNTTC 2 cut(s) 354, 1673
XspI CTAG 7 cut(s) 581, 683, 1008, 1520, 1611, 2228, 2285
ZrmI AGTACT 1 cut(s) 2177
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.