Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Forward (+)

87719687 .. 87723449

Gene Structure 3763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCTCACCATCCAACGATTGAAACCAAATGTAACAGACATCGAAATGCTAAAGAGAACCAATTCAAAGGTTGGCTTGGATGGGGATTCATTTGTCTTAAATTACATGGAGAATGCACTTATATTCAAACCAGAGAACATCATCAAAATAGGCAGCGAATACAACTACTCAGAGGCATTCAAAAACAAAAGTATATCTGCTGCCTTTCTTGAACTCCCATATGCAAAAGTATTCATGAACTATTACTGCAAGGGATATACTGCAACCACACCCACCTTTAGATTTGGAGGACTAGGCTTTATATTTCAGAAAGGCTCTCCAATTGCCTGGGATTTCACCAAGGCCATTCTAGAGTTATTGGAGAATGGCGAACTGAAGTCACTTGAAGATACTTGGTTGACACCGAATCATGACTGTCCAAACAATTCAACTTCCGATGATCCAGAAAGCTTGAGTGTCAAGAATTTTATTGGCCTTTATAAGTTTCAACAACTCGAGAATGCATACCTAGGCAATGCAATTGATGAAAGTGTTTGTAACAGGACAGTTAGAATACCAGGATTCCTATATAATAGAGAGTTCAATGTTCCAAGCAGAGCTCCACGTTTTGTTGATGTGCCGGAATTGACTTCTTCCCAAGGGGAGCATGTGATCACTTCCACCCCTCAGGAGCATCAACTTCAGGCCTCCACCCCCGCACAAACTGAATACAAATGGAGTAAAACAAGTTACCCCAACAAGCGGCCTGCAATTGGTGGCCAAATCAGAACTGGCCTCAACCAAAGTTCCTGTCCGGTCCAAGAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

269

Amino Acids

30.34

Weight (kDa)

6.0

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
AciI	CCGC	2 cut(s)	696, 742
AclWI	GGATC	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	1 cut(s)	463
AcuI	CTGAAG	2 cut(s)	395, 665
AfiI	CCNNNNNNNGG	2 cut(s)	741, 752
AgsI	TTSAA	9 cut(s)	22, 66, 127, 181, 212, 386, 429, 488, 583
AjnI	CCWGG	2 cut(s)	326, 556
AluBI	AGCT	2 cut(s)	450, 599
AluI	AGCT	2 cut(s)	450, 599
Alw21I	GWGCWC	1 cut(s)	601
AlwI	GGATC	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	494
AoxI	GGCC	6 cut(s)	342, 472, 684, 743, 757, 772
ApeKI	GCWGC	2 cut(s)	153, 200
ApoI	RAATTY	1 cut(s)	463
ArsI	GACNNNNNNTTYG	2 cut(s)	775, 807
Asp700I	GAANNNNTTC	1 cut(s)	61
AspA2I	CCTAGG	1 cut(s)	508
AspS9I	GGNCC	1 cut(s)	796
AsuHPI	GGTGA	1 cut(s)	328
AvaI	CYCGRG	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	796
AvrII	CCTAGG	1 cut(s)	508
AxyI	CCTNAGG	1 cut(s)	666
BalI	TGGCCA	1 cut(s)	759
BanII	GRGCYC	1 cut(s)	601
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	2 cut(s)	165, 187
BccI	CCATC	2 cut(s)	17, 74
BciT130I	CCWGG	2 cut(s)	328, 558
BclI	TGATCA	1 cut(s)	651
BfaI	CTAG	3 cut(s)	293, 350, 509
BisI	GCNGC	3 cut(s)	154, 201, 743
BlnI	CCTAGG	1 cut(s)	508
BlsI	GCNGC	3 cut(s)	155, 202, 744
Bme1390I	CCNGG	2 cut(s)	328, 558
Bme18I	GGWCC	1 cut(s)	796
BmeT110I	CYCGRG	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	796
BmrFI	CCNGG	2 cut(s)	328, 558
BmsI	GCATC	1 cut(s)	682
BpuEI	CTTGAG	1 cut(s)	472
BsaJI	CCNNGG	4 cut(s)	327, 339, 508, 637
BsaWI	WCCGGW	1 cut(s)	793
Bsc4I	CCNNNNNNNGG	2 cut(s)	741, 752
Bse1I	ACTGG	1 cut(s)	775
Bse21I	CCTNAGG	1 cut(s)	666
Bse3DI	GCAATG	1 cut(s)	520
BseBI	CCWGG	2 cut(s)	328, 558
BseDI	CCNNGG	4 cut(s)	327, 339, 508, 637
BseGI	GGATG	2 cut(s)	9, 85
BseLI	CCNNNNNNNGG	2 cut(s)	741, 752
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	2 cut(s)	183, 680
BseNI	ACTGG	1 cut(s)	775
BseXI	GCAGC	2 cut(s)	165, 187
BshFI	GGCC	6 cut(s)	344, 474, 686, 745, 759, 774
BsiHKAI	GWGCWC	1 cut(s)	601
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	2 cut(s)	620, 794
BslI	CCNNNNNNNGG	2 cut(s)	741, 752
BsmI	GAATGC	3 cut(s)	118, 176, 505
BsnI	GGCC	6 cut(s)	344, 474, 686, 745, 759, 774
BsoBI	CYCGRG	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp143I	GATC	2 cut(s)	439, 651
BspACI	CCGC	2 cut(s)	696, 742
BspANI	GGCC	6 cut(s)	344, 474, 686, 745, 759, 774
BspCNI	CTCAG	2 cut(s)	182, 679
BspHI	TCATGA	2 cut(s)	234, 409
BspPI	GGATC	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	520
BsrI	ACTGG	1 cut(s)	775
BssECI	CCNNGG	4 cut(s)	327, 339, 508, 637
BssMI	GATC	2 cut(s)	439, 651
BssT1I	CCWWGG	3 cut(s)	339, 508, 637
Bst2UI	CCWGG	2 cut(s)	328, 558
Bst4CI	ACNGT	2 cut(s)	416, 547
BstC8I	GCNNGC	1 cut(s)	747
BstDEI	CTNAG	2 cut(s)	169, 666
BstF5I	GGATG	2 cut(s)	9, 85
BstKTI	GATC	2 cut(s)	442, 654
BstMBI	GATC	2 cut(s)	439, 651
BstNI	CCWGG	2 cut(s)	328, 558
BstNSI	RCATGY	1 cut(s)	650
BstSCI	CCNGG	2 cut(s)	326, 556
BstV1I	GCAGC	2 cut(s)	165, 187
BstXI	CCANNNNNNTGG	1 cut(s)	327
Bsu36I	CCTNAGG	1 cut(s)	666
BsuRI	GGCC	6 cut(s)	344, 474, 686, 745, 759, 774
BtsCI	GGATG	2 cut(s)	9, 85
Cac8I	GCNNGC	1 cut(s)	747
CciI	TCATGA	2 cut(s)	234, 409
Cfr13I	GGNCC	1 cut(s)	796
CviAII	CATG	4 cut(s)	106, 235, 410, 647
DdeI	CTNAG	2 cut(s)	169, 666
DpnI	GATC	2 cut(s)	441, 653
DpnII	GATC	2 cut(s)	439, 651
EaeI	YGGCCR	1 cut(s)	757
Ecl136II	GAGCTC	1 cut(s)	599
Eco130I	CCWWGG	3 cut(s)	339, 508, 637
Eco147I	AGGCCT	1 cut(s)	686
Eco24I	GRGCYC	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	796
Eco53kI	GAGCTC	1 cut(s)	599
Eco57I	CTGAAG	2 cut(s)	395, 665
Eco81I	CCTNAGG	1 cut(s)	666
Eco88I	CYCGRG	1 cut(s)	494
EcoICRI	GAGCTC	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	326, 556
EcoT14I	CCWWGG	3 cut(s)	339, 508, 637
EcoT22I	ATGCAT	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	601
ErhI	CCWWGG	3 cut(s)	339, 508, 637
FaeI	CATG	4 cut(s)	109, 238, 413, 650
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	4 cut(s)	105, 234, 409, 646
FauI	CCCGC	1 cut(s)	703
FauNDI	CATATG	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	651
Fnu4HI	GCNGC	3 cut(s)	154, 201, 743
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	3 cut(s)	154, 201, 743
FspBI	CTAG	3 cut(s)	293, 350, 509
GluI	GCNGC	3 cut(s)	154, 201, 743
HaeIII	GGCC	6 cut(s)	344, 474, 686, 745, 759, 774
HapII	CCGG	2 cut(s)	620, 794
Hin1II	CATG	4 cut(s)	109, 238, 413, 650
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	448
HinfI	GANTC	4 cut(s)	86, 406, 561, 803
HpaII	CCGG	2 cut(s)	620, 794
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	4 cut(s)	172, 309, 436, 767
Hpy188III	TCNNGA	8 cut(s)	209, 235, 350, 410, 443, 460, 496, 668
Hpy8I	GTNNAC	1 cut(s)	399
HpyCH4III	ACNGT	2 cut(s)	416, 547
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	7 cut(s)	116, 224, 249, 263, 503, 518, 749
HpyF3I	CTNAG	2 cut(s)	169, 666
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	4 cut(s)	109, 238, 413, 650
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	2 cut(s)	439, 651
LmnI	GCTCC	3 cut(s)	604, 643, 670
Lsp1109I	GCAGC	2 cut(s)	165, 187
LweI	GCATC	1 cut(s)	682
MaeI	CTAG	3 cut(s)	293, 350, 509
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	4 cut(s)	31, 378, 536, 728
MalI	GATC	2 cut(s)	441, 653
MboI	GATC	2 cut(s)	439, 651
MboII	GAAGA	2 cut(s)	398, 624
MfeI	CAATTG	3 cut(s)	321, 519, 750
MhlI	GDGCHC	1 cut(s)	601
MlsI	TGGCCA	1 cut(s)	759
MluCI	AATT	8 cut(s)	61, 100, 321, 424, 463, 519, 623, 750
MluNI	TGGCCA	1 cut(s)	759
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	5 cut(s)	166, 281, 675, 697, 785
Mox20I	TGGCCA	1 cut(s)	759
Mph1103I	ATGCAT	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	61
MscI	TGGCCA	1 cut(s)	759
MseI	TTAA	2 cut(s)	98, 808
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	759
MspI	CCGG	2 cut(s)	620, 794
MspR9I	CCNGG	2 cut(s)	328, 558
MunI	CAATTG	3 cut(s)	321, 519, 750
Mva1269I	GAATGC	3 cut(s)	118, 176, 505
MvaI	CCWGG	2 cut(s)	328, 558
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	2 cut(s)	439, 651
NlaIII	CATG	4 cut(s)	109, 238, 413, 650
NmuCI	GTSAC	1 cut(s)	378
NsiI	ATGCAT	1 cut(s)	505
NspI	RCATGY	1 cut(s)	650
PaeR7I	CTCGAG	1 cut(s)	494
PagI	TCATGA	2 cut(s)	234, 409
PceI	AGGCCT	1 cut(s)	686
PctI	GAATGC	3 cut(s)	118, 176, 505
PdmI	GAANNNNTTC	1 cut(s)	61
PfeI	GAWTC	4 cut(s)	86, 406, 561, 803
PkrI	GCNGC	3 cut(s)	155, 202, 744
PsiI	TTATAA	1 cut(s)	480
Psp124BI	GAGCTC	1 cut(s)	601
Psp6I	CCWGG	2 cut(s)	326, 556
PspGI	CCWGG	2 cut(s)	326, 556
PspPI	GGNCC	1 cut(s)	796
RseI	CAYNNNNRTG	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	601
SaqAI	TTAA	2 cut(s)	98, 808
SatI	GCNGC	3 cut(s)	154, 201, 743
Sau3AI	GATC	2 cut(s)	439, 651
Sau96I	GGNCC	1 cut(s)	796
ScrFI	CCNGG	2 cut(s)	328, 558
SduI	GDGCHC	1 cut(s)	601
SetI	ASST	6 cut(s)	72, 278, 452, 510, 601, 607
SfaNI	GCATC	1 cut(s)	682
Sfr274I	CTCGAG	1 cut(s)	494
SinI	GGWCC	1 cut(s)	796
SlaI	CTCGAG	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	451, 494
SmoI	CTYRAG	2 cut(s)	451, 494
Sse9I	AATT	8 cut(s)	61, 100, 321, 424, 463, 519, 623, 750
SseBI	AGGCCT	1 cut(s)	686
SsiI	CCGC	2 cut(s)	696, 742
SspMI	CTAG	3 cut(s)	293, 350, 509
SstI	GAGCTC	1 cut(s)	601
StuI	AGGCCT	1 cut(s)	686
StyD4I	CCNGG	2 cut(s)	326, 556
StyI	CCWWGG	3 cut(s)	339, 508, 637
TaaI	ACNGT	2 cut(s)	416, 547
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	2 cut(s)	42, 495
TasI	AATT	8 cut(s)	61, 100, 321, 424, 463, 519, 623, 750
TauI	GCSGC	1 cut(s)	745
TfiI	GAWTC	4 cut(s)	86, 406, 561, 803
Tru1I	TTAA	2 cut(s)	98, 808
Tru9I	TTAA	2 cut(s)	98, 808
TseFI	GTSAC	1 cut(s)	378
TseI	GCWGC	2 cut(s)	153, 200
Tsp45I	GTSAC	1 cut(s)	378
TspDTI	ATGAA	4 cut(s)	78, 223, 251, 540
VpaK11BI	GGWCC	1 cut(s)	796
XapI	RAATTY	1 cut(s)	463
XbaI	TCTAGA	1 cut(s)	349
XceI	RCATGY	1 cut(s)	650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	767
XhoI	CTCGAG	1 cut(s)	494
XmaJI	CCTAGG	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	61
XspI	CTAG	3 cut(s)	293, 350, 509
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.