Rmu_sc0001709.1_g000019

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001709.1
Physical Location & Seq
Reverse (-)
75219 .. 78379
3161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001709.1_g000019.1.cds

Sequence Viewer

Length: 1500 bp
atggaaacttggcaggaagcagttacagtagctgatgtggtcaaaaacctatctgatcaaattccggtcatttcctttgcagcacccaccatatccccgccactattacaacggcgttggccttccttgatacgaatggctaccgatggtgctgctcagatgaaatgcattggagatatagttaatgcttacaactggaaaagggttgttgtaatatatgaagatgatggttatggtggtggtgtggggaggctagctcttttatctgagactctaagaaatgttggttctacaattgagcttcgtatagttctcccacgactttctgagcctgatacaaattgggatgaaataaagaagcagctgttggagctttccaatgtaaactctcgggcatttatagttcttcagtcatctttaccaacagtaactggtctattcaaagtggctaggaagatgggatttgtaggaaatgattcagcttggataatcacagagagtattgctagtttgcttgaccctcatggcaactacgatatggaaggaactctgggaatcaagacctactacgccaatgagtctagttcttatgctgaattccacaaggaattccaagctaagtatgcagaagaaaataactccaagccaggaatttatgctcttcgagcatatgatactattaatgccatttcacaggccatggaaggaatccctaataacaccactagtactagccttcaggttatgataactagatcgttgagcaattacaacggtttaagtgggaaaatgcaactaaaaggaggtgaggtaccgctggattctccgagattcaggatcataaatattgtgggtgggaagacagataacgaattaaacttttggataccagactttggattttcagaaagccttgaaaaagtatcagacaaatacagaagtaatgatggtgttggcaaagtcatttggcccgggaacccaacactgccctccaaaggctgggcaatgcccactgatgagaagccaatgaaaattttgctcccagcttcccacgaaaattttgtaaggcatatcagcggggagaactcaaatcagatgggaaaagagggtttatgtttaggaaagggaaaagacgaagttttcatgaacaattactgtaagggatttaccaacaccaaagccacctacagttttggaggctttagctttgcatttcagaaaggttctccaatagcgaggaatttctctatggtcatcctagatctattggagaacggaaaaatgagagaacttcaagatcactggttgaatccgagcaaatgtccaaccaatacaacttccgatatgccagaaagcttgaccatcgagagcttttggggcatctttgtaatatccggtgcgacttccaccctctgtcttctatcttctgccatcttgaaaaagtttggacaccaagaagcatccggaacacgccctgaaaattccgtacaagtgctctaa

Protein Analysis

499

Amino Acids

55.14

Weight (kDa)

5.99

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 811
AccB1I GGYRCC 1 cut(s) 811
AccB7I CCANNNNNTGG 2 cut(s) 896, 999
AccIII TCCGGA 1 cut(s) 1463
AciI CCGC 3 cut(s) 98, 815, 1077
AclWI GGATC 1 cut(s) 845
AcsI RAATTY 8 cut(s) 60, 596, 608, 651, 1032, 1057, 1240, 1480
AcuI CTGAAG 2 cut(s) 392, 722
AfaI GTAC 3 cut(s) 730, 813, 1488
AfiI CCNNNNNNNGG 3 cut(s) 896, 995, 999
AgsI TTSAA 5 cut(s) 442, 917, 1295, 1309, 1438
AhlI ACTAGT 1 cut(s) 725
AjnI CCWGG 1 cut(s) 646
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
Alw21I GWGCWC 1 cut(s) 1497
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 1 cut(s) 845
AlwNI CAGNNNCTG 2 cut(s) 32, 431
Ama87I CYCGRG 2 cut(s) 390, 971
Aor13HI TCCGGA 1 cut(s) 1463
AoxI GGCC 3 cut(s) 119, 696, 968
ApeKI GCWGC 3 cut(s) 80, 152, 361
ApoI RAATTY 8 cut(s) 60, 596, 608, 651, 1032, 1057, 1240, 1480
AseI ATTAAT 1 cut(s) 681
Asp700I GAANNNNTTC 1 cut(s) 475
Asp718I GGTACC 1 cut(s) 811
AspS9I GGNCC 1 cut(s) 969
AsuC2I CCSGG 2 cut(s) 972, 973
AsuHPI GGTGA 1 cut(s) 818
AsuNHI GCTAGC 1 cut(s) 253
AvaI CYCGRG 2 cut(s) 390, 971
BanI GGYRCC 1 cut(s) 811
BbsI GAAGAC 2 cut(s) 866, 1409
Bbv12I GWGCWC 1 cut(s) 1497
BbvI GCAGC 3 cut(s) 92, 139, 373
BccI CCATC 7 cut(s) 140, 221, 451, 941, 1090, 1370, 1439
BceAI ACGGC 1 cut(s) 128
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 1 cut(s) 648
BciVI GTATCC 1 cut(s) 879
BclI TGATCA 1 cut(s) 55
BcnI CCSGG 2 cut(s) 972, 973
BcoDI GTCTC 1 cut(s) 263
BcuI ACTAGT 1 cut(s) 725
BfaI CTAG 8 cut(s) 254, 450, 507, 582, 726, 732, 753, 1259
BfmI CTRYAG 1 cut(s) 1186
BfuI GTATCC 1 cut(s) 879
BglII AGATCT 1 cut(s) 1261
BisI GCNGC 3 cut(s) 81, 153, 362
BlsI GCNGC 3 cut(s) 82, 154, 363
BmcAI AGTACT 1 cut(s) 730
Bme1390I CCNGG 3 cut(s) 648, 972, 973
BmeT110I CYCGRG 2 cut(s) 390, 971
BmgT120I GGNCC 1 cut(s) 969
BmiI GGNNCC 2 cut(s) 813, 977
BmrFI CCNGG 3 cut(s) 648, 972, 973
BmsI GCATC 2 cut(s) 1389, 1469
BmtI GCTAGC 1 cut(s) 257
BpiI GAAGAC 2 cut(s) 866, 1409
BplI GAGNNNNNCTC 2 cut(s) 241, 273
BpuMI CCSGG 2 cut(s) 972, 973
BsaJI CCNNGG 2 cut(s) 699, 971
BsaWI WCCGGW 3 cut(s) 64, 1394, 1463
BsaXI ACNNNNNCTCC 4 cut(s) 165, 195, 795, 825
Bsc4I CCNNNNNNNGG 3 cut(s) 896, 995, 999
Bse1I ACTGG 3 cut(s) 200, 436, 1307
Bse3DI GCAATG 1 cut(s) 1011
BseAI TCCGGA 1 cut(s) 1463
BseBI CCWGG 1 cut(s) 648
BseDI CCNNGG 2 cut(s) 699, 971
BseGI GGATG 3 cut(s) 352, 1254, 1460
BseLI CCNNNNNNNGG 3 cut(s) 896, 995, 999
BseMI GCAATG 1 cut(s) 1011
BseMII CTCAG 3 cut(s) 170, 258, 318
BseNI ACTGG 3 cut(s) 200, 436, 1307
BseXI GCAGC 3 cut(s) 92, 139, 373
BseYI CCCAGC 2 cut(s) 999, 1042
BshFI GGCC 3 cut(s) 121, 698, 970
BshNI GGYRCC 1 cut(s) 811
BsiHKAI GWGCWC 1 cut(s) 1497
BsiHKCI CYCGRG 2 cut(s) 390, 971
BsiSI CCGG 4 cut(s) 65, 972, 1395, 1464
BslI CCNNNNNNNGG 3 cut(s) 896, 995, 999
BsmAI GTCTC 1 cut(s) 263
BsnI GGCC 3 cut(s) 121, 698, 970
BsoBI CYCGRG 2 cut(s) 390, 971
Bsp1286I GDGCHC 1 cut(s) 1497
Bsp13I TCCGGA 1 cut(s) 1463
Bsp143I GATC 5 cut(s) 55, 755, 837, 1261, 1297
Bsp19I CCATGG 1 cut(s) 699
BspACI CCGC 3 cut(s) 98, 815, 1077
BspANI GGCC 3 cut(s) 121, 698, 970
BspCNI CTCAG 3 cut(s) 169, 259, 319
BspEI TCCGGA 1 cut(s) 1463
BspHI TCATGA 1 cut(s) 1143
BspLI GGNNCC 2 cut(s) 813, 977
BspOI GCTAGC 1 cut(s) 257
BspPI GGATC 1 cut(s) 845
BspQI GCTCTTC 1 cut(s) 666
BspT107I GGYRCC 1 cut(s) 811
BsrDI GCAATG 1 cut(s) 1011
BsrI ACTGG 3 cut(s) 200, 436, 1307
BssECI CCNNGG 2 cut(s) 699, 971
BssMI GATC 5 cut(s) 55, 755, 837, 1261, 1297
BssT1I CCWWGG 1 cut(s) 699
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 5 cut(s) 28, 427, 776, 1157, 1190
Bst6I CTCTTC 1 cut(s) 666
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 5 cut(s) 156, 267, 275, 327, 618
BstDSI CCRYGG 1 cut(s) 699
BstF5I GGATG 3 cut(s) 352, 1254, 1460
BstKTI GATC 5 cut(s) 58, 758, 840, 1264, 1300
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 5 cut(s) 55, 755, 837, 1261, 1297
BstMWI GCNNNNNNNGC 4 cut(s) 370, 623, 665, 1377
BstNI CCWGG 1 cut(s) 648
BstSCI CCNGG 3 cut(s) 646, 970, 971
BstSFI CTRYAG 1 cut(s) 1186
BstV1I GCAGC 3 cut(s) 92, 139, 373
BstV2I GAAGAC 2 cut(s) 866, 1409
BstX2I RGATCY 1 cut(s) 1261
BstYI RGATCY 1 cut(s) 1261
BsuI GTATCC 1 cut(s) 879
BsuRI GGCC 3 cut(s) 121, 698, 970
BtgI CCRYGG 1 cut(s) 699
BtsCI GGATG 3 cut(s) 352, 1254, 1460
BtsI GCAGTG 1 cut(s) 983
BtsIMutI CAGTG 3 cut(s) 983, 1011, 1300
Cac8I GCNNGC 1 cut(s) 255
CaiI CAGNNNCTG 2 cut(s) 32, 431
CciI TCATGA 1 cut(s) 1143
Cfr13I GGNCC 1 cut(s) 969
Cfr9I CCCGGG 1 cut(s) 971
Csp6I GTAC 3 cut(s) 729, 812, 1487
CviAII CATG 3 cut(s) 524, 700, 1144
CviQI GTAC 3 cut(s) 729, 812, 1487
DdeI CTNAG 5 cut(s) 156, 267, 275, 327, 618
DpnI GATC 5 cut(s) 57, 757, 839, 1263, 1299
DpnII GATC 5 cut(s) 55, 755, 837, 1261, 1297
Eam1104I CTCTTC 1 cut(s) 666
EarI CTCTTC 1 cut(s) 666
Eco130I CCWWGG 1 cut(s) 699
Eco57I CTGAAG 2 cut(s) 392, 722
Eco88I CYCGRG 2 cut(s) 390, 971
EcoRI GAATTC 2 cut(s) 596, 608
EcoRII CCWGG 1 cut(s) 646
EcoT14I CCWWGG 1 cut(s) 699
EcoT22I ATGCAT 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 699
FaeI CATG 3 cut(s) 527, 703, 1147
FatI CATG 3 cut(s) 523, 699, 1143
FauI CCCGC 2 cut(s) 105, 1070
FauNDI CATATG 1 cut(s) 670
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 3 cut(s) 81, 153, 362
FokI GGATG 3 cut(s) 359, 1241, 1447
Fsp4HI GCNGC 3 cut(s) 81, 153, 362
FspBI CTAG 8 cut(s) 254, 450, 507, 582, 726, 732, 753, 1259
GluI GCNGC 3 cut(s) 81, 153, 362
GsaI CCCAGC 2 cut(s) 1003, 1046
HaeIII GGCC 3 cut(s) 121, 698, 970
HapII CCGG 4 cut(s) 65, 972, 1395, 1464
Hin1II CATG 3 cut(s) 527, 703, 1147
HindIII AAGCTT 1 cut(s) 1354
HinfI GANTC 8 cut(s) 271, 476, 555, 578, 708, 821, 831, 1309
HpaII CCGG 4 cut(s) 65, 972, 1395, 1464
HphI GGTGA 1 cut(s) 818
Hpy166II GTNNAC 1 cut(s) 385
Hpy188III TCNNGA 7 cut(s) 559, 835, 1144, 1295, 1366, 1435, 1464
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 4 cut(s) 132, 536, 698, 746
HpyCH4III ACNGT 5 cut(s) 28, 427, 776, 1157, 1190
HpyCH4V TGCA 5 cut(s) 80, 168, 626, 793, 1211
HpyF10VI GCNNNNNNNGC 4 cut(s) 370, 623, 665, 1377
HpyF3I CTNAG 5 cut(s) 156, 267, 275, 327, 618
Hsp92II CATG 3 cut(s) 527, 703, 1147
Kpn2I TCCGGA 1 cut(s) 1463
KpnI GGTACC 1 cut(s) 815
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 5 cut(s) 55, 755, 837, 1261, 1297
LguI GCTCTTC 1 cut(s) 666
LmnI GCTCC 2 cut(s) 370, 1044
Lsp1109I GCAGC 3 cut(s) 92, 139, 373
LweI GCATC 2 cut(s) 1389, 1469
MaeI CTAG 8 cut(s) 254, 450, 507, 582, 726, 732, 753, 1259
MaeIII GTNAC 2 cut(s) 22, 427
MalI GATC 5 cut(s) 57, 757, 839, 1263, 1299
MboI GATC 5 cut(s) 55, 755, 837, 1261, 1297
MboII GAAGA 8 cut(s) 233, 398, 466, 641, 653, 871, 1409, 1416
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 1 cut(s) 1261
MhlI GDGCHC 1 cut(s) 1497
MlyI GAGTC 2 cut(s) 265, 587
MmeI TCCRAC 2 cut(s) 348, 1349
MnlI CCTC 9 cut(s) 243, 531, 797, 802, 1000, 1099, 1190, 1230, 1421
Mph1103I ATGCAT 1 cut(s) 170
MroI TCCGGA 1 cut(s) 1463
MroXI GAANNNNTTC 1 cut(s) 475
MseI TTAA 4 cut(s) 183, 681, 779, 875
MspA1I CMGCKG 3 cut(s) 364, 817, 1077
MspI CCGG 4 cut(s) 65, 972, 1395, 1464
MspR9I CCNGG 3 cut(s) 648, 972, 973
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 648
MwoI GCNNNNNNNGC 4 cut(s) 370, 623, 665, 1377
NciI CCSGG 2 cut(s) 972, 973
NcoI CCATGG 1 cut(s) 699
NdeI CATATG 1 cut(s) 670
NdeII GATC 5 cut(s) 55, 755, 837, 1261, 1297
NheI GCTAGC 1 cut(s) 253
NlaIII CATG 3 cut(s) 527, 703, 1147
NlaIV GGNNCC 2 cut(s) 813, 977
NsiI ATGCAT 1 cut(s) 170
PagI TCATGA 1 cut(s) 1143
PciSI GCTCTTC 1 cut(s) 666
PdmI GAANNNNTTC 1 cut(s) 475
PfeI GAWTC 6 cut(s) 476, 555, 708, 821, 831, 1309
PflMI CCANNNNNTGG 2 cut(s) 896, 999
PkrI GCNGC 3 cut(s) 82, 154, 363
PleI GAGTC 2 cut(s) 265, 586
PpsI GAGTC 2 cut(s) 265, 586
PshBI ATTAAT 1 cut(s) 681
Psp6I CCWGG 1 cut(s) 646
PspFI CCCAGC 2 cut(s) 999, 1042
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 2 cut(s) 813, 977
PspPI GGNCC 1 cut(s) 969
PstNI CAGNNNCTG 2 cut(s) 32, 431
PsuI RGATCY 1 cut(s) 1261
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 3 cut(s) 730, 813, 1488
RsaNI GTAC 3 cut(s) 729, 812, 1487
SapI GCTCTTC 1 cut(s) 666
SaqAI TTAA 4 cut(s) 183, 681, 779, 875
SatI GCNGC 3 cut(s) 81, 153, 362
Sau3AI GATC 5 cut(s) 55, 755, 837, 1261, 1297
Sau96I GGNCC 1 cut(s) 969
ScaI AGTACT 1 cut(s) 730
SchI GAGTC 2 cut(s) 265, 587
ScrFI CCNGG 3 cut(s) 648, 972, 973
SduI GDGCHC 1 cut(s) 1497
SfaNI GCATC 2 cut(s) 1389, 1469
SfcI CTRYAG 1 cut(s) 1186
SmaI CCCGGG 1 cut(s) 973
SpeI ACTAGT 1 cut(s) 725
SsiI CCGC 3 cut(s) 98, 815, 1077
SspI AATATT 1 cut(s) 847
SspMI CTAG 8 cut(s) 254, 450, 507, 582, 726, 732, 753, 1259
StyD4I CCNGG 3 cut(s) 646, 970, 971
StyI CCWWGG 1 cut(s) 699
TaaI ACNGT 5 cut(s) 28, 427, 776, 1157, 1190
TaqI TCGA 2 cut(s) 664, 1365
TatI WGTACW 1 cut(s) 728
TfiI GAWTC 6 cut(s) 476, 555, 708, 821, 831, 1309
Tru1I TTAA 4 cut(s) 183, 681, 779, 875
Tru9I TTAA 4 cut(s) 183, 681, 779, 875
TscAI CASTG 3 cut(s) 990, 1018, 1307
TseI GCWGC 3 cut(s) 80, 152, 361
TspDTI ATGAA 6 cut(s) 176, 234, 363, 1043, 1132, 1160
TspGWI ACGGA 2 cut(s) 1290, 1474
TspMI CCCGGG 1 cut(s) 971
TspRI CASTG 3 cut(s) 990, 1018, 1307
Van91I CCANNNNNTGG 2 cut(s) 896, 999
VspI ATTAAT 1 cut(s) 681
XapI RAATTY 8 cut(s) 60, 596, 608, 651, 1032, 1057, 1240, 1480
XmaI CCCGGG 1 cut(s) 971
XmnI GAANNNNTTC 1 cut(s) 475
XspI CTAG 8 cut(s) 254, 450, 507, 582, 726, 732, 753, 1259
ZrmI AGTACT 1 cut(s) 730
Zsp2I ATGCAT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.