Rh5AG363100

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
61330254 .. 61333646
3393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG363100.1

Sequence Viewer

Length: 2724 bp
ATGGCTATTCCTTGTATCAATTCCTCTAACAAAATCCAAAGACTTTGGCTCCTGCTTCCTCTGCTCATCATCATCACCATGATCACTCTCTCAGATGTTGCTGAAGCTGAAAATGAGAAAATTATCATCAATGTTGGAGCAATCGTTAATATGAACACTCGTATGGGTAAAGAACAGAAAACTGCTATGGATATTGCAGCGGACAGCTTCAGCAGCCATTCAAAGACTCATAGCCTAATCCTTCATTTTCGACATTCTGACAGAGATCCCTTAATTGCTGCATCTGCTGCTGAAGAGTTGATAAACGATAAGAAGGTAAAACTGATAATTGGCATGGAGACTTGGCAGGAAGCAGCTCTAGTAGCTGATGTGGGGAACCGAGCTCAAGTTCCGGTGATTTCATTTGCAGCACCTACTATAAACCCACCTCTAATACAACATGACTGGCCATTTTTGATACGAGTGGCAAGCGATCGTGCTTCTCAGATGAAATGCATCACAGATGTAGTGTCTTTGTACACTTGGAAAAGGGTTATTGTTATATACCAGGATGACGGTTATGGTGGCGATGCTGGGATGCTAGCTGTTTTATCTGAGGCTCTCCAAAACGTTGGCTCAAAGATTGAGCAGTATTTGGTTCTCCCACGGGTTTCTTCCTTGTCTAATCCTAGTTGGGGTGAACTAGAAGAGATCTTGAAGCTTCCCACCTTTCAATCTCGGGTGTTCATTGTTCTCCAGTCGTCTTTCCCATCAGTCACTAATCTATTCAGGGTGGCAAAAAAGATGGGACTTGTAGGAAGAGACTCAGCTTGGATAATCACAGAGAGTATTACAAGTTTGCTTGACTCTCAAGTCAATCATGATATGGTAGGTACTTTGGGAATCAAGTCCTACTATGCCAATAATACTAGTTCCTATGCTAAGTTTGTAGAGGTATTCCAAACAAGATTTCTAGAAGAAGATAACTCCAAGCCAGGAATTTATGCTCTTCGAGCATACGATCTTATTATGATCGTATCACAGGCCATAAGGAACACTACTAACAGTACTAACCTTCAGGTGTTGTTAAATACAGTACTGAACAATTATACGTGTTTAAGTGGCAAAATGCACTTCAAAAGAGGTGAAGTATTGTACACTCCAATATTCAGGATCATAAATATTGTGGAAGGGAACAGACACAAAGAATTGGACCTTTGGAGACCAGAGGTTGGGTTCTCTCAGAGACTTTCAAAAGAGACAAGCAAAAACAGAAGTGATGATGCGGTAGTTTGGCCCGGCAACCTAACTGAACGAGCCCCTAAAGGCTGGGCAATGCCCACTGCAAGAAAGCCCTTGACAATTGTGGTTCCAGGTAGAACTTCCTTCAGTGCATTTGTAAAGGTTGATAACAGGACGAACACACCGCACTATGACGGTTTCTGCATTCAAATTTTTAACAAGGTGCTAAGTCGCTTGGGCTATCCTCTGCCATATGAGCTCCATGCCGTTAATGCCTCCTATGATGATATGGTAGAACAAGTTTATAACAAGACTTTTGATGCTGGTGTTGGAGATTTCACCGTACTAGCAGACCGATTGGACAAAGTGGAATTCACTCAGCCCTATATTGAGTCTGGTTTGTCAATGATAGTTCAAGAAAAAAATGAGCAATTAACATGGATGTTTATAAAACCTCTTACCTGGGAAATGTGGGTGGCGAGTGGTGGCATATTAGTCTACACAATCTTGATTATATGGTTTCTGGAGCGCCCGTCTAATCCAGAGTTCAGTGGTCCATTGAAGAATCAGATTGGCACCGCAACTTGGTTTGCCTTCACCTCTTTGTTCTTTTCTCACAGAGAGAAAATCCATAACAACTTAACTCGAGTAGTTGTTGTAATGTGGCTGTTTGTTGTATTAATCCTAACCTCAAGCTACACCGCTAATTTGTCGTCAATGCTCACCATCCAACGATTGAAACCAAATGTAACAGACATCGAAATACTAAAGAGAACCAACTCAAAGGTTGGCTTGGATGGGGATTCATTTGTCGTAACTTACATGGAGAGGGTACTTCAATTCAATTCACAGAACATCATCACAATAAGCAGTGAATTCAACTACACAGAGGCATTTAAAAACGGAAGTATATCTGCTGCCTTTCTTGAACTCCCATATGCTAAAGTATTCATGAACCACTACTGCAAGGGATATACTGCGACCACACCCACCTTTAGATTTGGAGGACTAGGCTTTATATTTCAGAAAGGCTCTCCAATTGCCCGGGATTTCACCAAGGCCATTCTAGAGTTATTGGAGGATGGAGAACTGAAGTCACTTGAAGATACTTGGTTGACACCAAATCGTGACTGTCCAAATAATGCAAGTTCTGATGTTCCAGATAGCTTGAGCGTCAAGAATTTTATGGGCCTTTATGTAATATCCAGCGCTACTTCTACCATTTGCCTTCTATTATCCTTCACTATCTTGCTGAAGAAGTTTCAACAACACGAGGATGCATACCTAGGCAATGCAAGTGATGAAAGTGTTTGGAACAAGACAGTTAGAATAGCAAGATTCCTATATAATAAAGAGTTCAATGTTCCAAGCAGAGCTCCAAGTATTGTTGATGTGCCAGAATTGATTTCTTCCCAAGGGGAGCATGTGATCACTTCCACCCCTCAGGAGCATCAACTTCAGGCCTCCACCCCCGCACAAACTGAAAGCGGTCCACTACATTAA

Protein Analysis

907

Amino Acids

101.96

Weight (kDa)

6.42

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 60 - 376 8.1e-37 Receptor family ligand binding region
Peripla_BP_6 PF13458 85 - 350 1.3e-13 Periplasmic binding protein
Lig_chan-Glu_bd PF10613 462 - 548 3.9e-09 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 469 - 780 2.3e-14 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 561 - 809 3.4e-30 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1527, 1670
AasI GACNNNNNNGTC 1 cut(s) 851
AccB1I GGYRCC 1 cut(s) 1796
AccB7I CCANNNNNTGG 1 cut(s) 1211
AccI GTMKAC 1 cut(s) 1719
AciI CCGC 7 cut(s) 200, 1265, 1406, 1800, 1923, 2694, 2709
AclI AACGTT 1 cut(s) 609
AclWI GGATC 2 cut(s) 260, 1160
AcoI YGGCCR 1 cut(s) 446
AcsI RAATTY 5 cut(s) 978, 1431, 1592, 2096, 2401
AcuI CTGAAG 8 cut(s) 123, 193, 312, 1040, 1351, 2333, 2495, 2663
AfaI GTAC 7 cut(s) 518, 874, 1048, 1077, 1136, 1566, 2055
AfeI AGCGCT 1 cut(s) 2431
AfiI CCNNNNNNNGG 3 cut(s) 674, 1211, 1806
AflIII ACRYGT 1 cut(s) 1091
AhlI ACTAGT 1 cut(s) 908
AjnI CCWGG 4 cut(s) 546, 973, 1351, 1682
AjuI GAANNNNNNNTTGG 2 cut(s) 933, 965
Alw21I GWGCWC 3 cut(s) 385, 1482, 2599
Alw26I GTCTC 5 cut(s) 332, 795, 1195, 1219, 1232
AlwI GGATC 2 cut(s) 260, 1160
Ama87I CYCGRG 3 cut(s) 717, 1866, 2265
Aor51HI AGCGCT 1 cut(s) 2431
AoxI GGCC 6 cut(s) 446, 1023, 1274, 2280, 2410, 2682
ApeKI GCWGC 7 cut(s) 197, 213, 278, 287, 353, 407, 2138
ApoI RAATTY 5 cut(s) 978, 1431, 1592, 2096, 2401
AseI ATTAAT 1 cut(s) 1901
AspA2I CCTAGG 1 cut(s) 2506
AspLEI GCGC 2 cut(s) 1752, 2432
AspS9I GGNCC 5 cut(s) 1192, 1275, 1775, 2410, 2711
AsuC2I CCSGG 3 cut(s) 1278, 2266, 2267
AsuHPI GGTGA 8 cut(s) 67, 406, 689, 1136, 1552, 1810, 1936, 2266
AsuNHI GCTAGC 1 cut(s) 580
AvaI CYCGRG 3 cut(s) 717, 1866, 2265
AvaII GGWCC 3 cut(s) 1192, 1775, 2711
AvrII CCTAGG 1 cut(s) 2506
AxyI CCTNAGG 1 cut(s) 2664
BalI TGGCCA 1 cut(s) 448
BanI GGYRCC 1 cut(s) 1796
BanII GRGCYC 4 cut(s) 385, 1300, 1482, 2599
BauI CACGAG 1 cut(s) 2492
Bbv12I GWGCWC 3 cut(s) 385, 1482, 2599
BbvI GCAGC 7 cut(s) 209, 225, 265, 274, 365, 419, 2125
BccI CCATC 5 cut(s) 757, 778, 1955, 2012, 2297
BceAI ACGGC 1 cut(s) 1472
BciT130I CCWGG 4 cut(s) 548, 975, 1353, 1684
BclI TGATCA 2 cut(s) 81, 2649
BcnI CCSGG 3 cut(s) 1278, 2266, 2267
BcoDI GTCTC 5 cut(s) 332, 795, 1195, 1219, 1232
BcuI ACTAGT 1 cut(s) 908
BfoI RGCGCY 2 cut(s) 1753, 2433
BglII AGATCT 1 cut(s) 690
BisI GCNGC 7 cut(s) 198, 214, 279, 288, 354, 408, 2139
BlnI CCTAGG 1 cut(s) 2506
BlsI GCNGC 7 cut(s) 199, 215, 280, 289, 355, 409, 2140
BmcAI AGTACT 2 cut(s) 1048, 1077
Bme1390I CCNGG 7 cut(s) 548, 975, 1278, 1353, 1684, 2266, 2267
Bme18I GGWCC 3 cut(s) 1192, 1775, 2711
BmeT110I CYCGRG 3 cut(s) 717, 1866, 2265
BmgT120I GGNCC 5 cut(s) 1192, 1275, 1775, 2410, 2711
BmiI GGNNCC 4 cut(s) 50, 377, 1350, 1798
BmrFI CCNGG 7 cut(s) 548, 975, 1278, 1353, 1684, 2266, 2267
BmsI GCATC 8 cut(s) 290, 504, 559, 567, 1252, 1531, 2488, 2680
BmtI GCTAGC 1 cut(s) 584
BpmI CTGGAG 2 cut(s) 719, 1766
BpuEI CTTGAG 4 cut(s) 369, 834, 1897, 2410
BpuMI CCSGG 3 cut(s) 1278, 2266, 2267
BsaAI YACGTR 1 cut(s) 1092
BsaI GGTCTC 1 cut(s) 1195
BsaJI CCNNGG 6 cut(s) 644, 1683, 2265, 2277, 2506, 2635
BsaWI WCCGGW 1 cut(s) 391
BsaXI ACNNNNNCTCC 6 cut(s) 33, 63, 129, 159, 1739, 1769
Bsc4I CCNNNNNNNGG 3 cut(s) 674, 1211, 1806
Bse1I ACTGG 2 cut(s) 449, 736
Bse21I CCTNAGG 1 cut(s) 2664
Bse3DI GCAATG 2 cut(s) 1320, 2518
BseBI CCWGG 4 cut(s) 548, 975, 1353, 1684
BseDI CCNNGG 6 cut(s) 644, 1683, 2265, 2277, 2506, 2635
BseGI GGATG 7 cut(s) 556, 582, 1668, 1947, 2023, 2308, 2503
BseLI CCNNNNNNNGG 3 cut(s) 674, 1211, 1806
BseMI GCAATG 2 cut(s) 1320, 2518
BseMII CTCAG 7 cut(s) 105, 497, 585, 819, 1235, 1613, 2678
BseNI ACTGG 2 cut(s) 449, 736
BseXI GCAGC 7 cut(s) 209, 225, 265, 274, 365, 419, 2125
BseYI CCCAGC 2 cut(s) 572, 1308
Bsh1285I CGRYCG 1 cut(s) 475
BshFI GGCC 6 cut(s) 448, 1025, 1276, 2282, 2412, 2684
BshNI GGYRCC 1 cut(s) 1796
BsiEI CGRYCG 1 cut(s) 475
BsiHKAI GWGCWC 3 cut(s) 385, 1482, 2599
BsiHKCI CYCGRG 3 cut(s) 717, 1866, 2265
BsiSI CCGG 3 cut(s) 392, 1278, 2266
BslFI GGGAC 1 cut(s) 801
BslI CCNNNNNNNGG 3 cut(s) 674, 1211, 1806
BsmAI GTCTC 5 cut(s) 332, 795, 1195, 1219, 1232
BsmFI GGGAC 1 cut(s) 801
BsmI GAATGC 1 cut(s) 1425
BsnI GGCC 6 cut(s) 448, 1025, 1276, 2282, 2412, 2684
Bso31I GGTCTC 1 cut(s) 1195
BsoBI CYCGRG 3 cut(s) 717, 1866, 2265
Bsp1286I GDGCHC 4 cut(s) 385, 1300, 1482, 2599
Bsp1407I TGTACA 2 cut(s) 516, 1134
Bsp143I GATC 8 cut(s) 81, 265, 472, 690, 1000, 1011, 1152, 2649
BspACI CCGC 7 cut(s) 200, 1265, 1406, 1800, 1923, 2694, 2709
BspANI GGCC 6 cut(s) 448, 1025, 1276, 2282, 2412, 2684
BspCNI CTCAG 7 cut(s) 104, 496, 586, 818, 1234, 1612, 2677
BspHI TCATGA 2 cut(s) 859, 2172
BspLI GGNNCC 4 cut(s) 50, 377, 1350, 1798
BspOI GCTAGC 1 cut(s) 584
BspPI GGATC 2 cut(s) 260, 1160
BspQI GCTCTTC 1 cut(s) 993
BspT107I GGYRCC 1 cut(s) 1796
BspTNI GGTCTC 1 cut(s) 1195
BsrDI GCAATG 2 cut(s) 1320, 2518
BsrGI TGTACA 2 cut(s) 516, 1134
BsrI ACTGG 2 cut(s) 449, 736
BssECI CCNNGG 6 cut(s) 644, 1683, 2265, 2277, 2506, 2635
BssMI GATC 8 cut(s) 81, 265, 472, 690, 1000, 1011, 1152, 2649
BssSI CACGAG 1 cut(s) 2492
BssT1I CCWWGG 3 cut(s) 2277, 2506, 2635
Bst2BI CACGAG 1 cut(s) 2492
Bst2UI CCWGG 4 cut(s) 548, 975, 1353, 1684
Bst4CI ACNGT 7 cut(s) 557, 1046, 1075, 1418, 1564, 2354, 2545
Bst6I CTCTTC 4 cut(s) 288, 681, 793, 993
BstAPI GCANNNNNTGC 1 cut(s) 287
BstAUI TGTACA 2 cut(s) 516, 1134
BstBAI YACGTR 1 cut(s) 1092
BstC8I GCNNGC 2 cut(s) 469, 582
BstDEI CTNAG 9 cut(s) 91, 483, 594, 805, 921, 1221, 1448, 1599, 2664
BstDSI CCRYGG 1 cut(s) 644
BstF5I GGATG 7 cut(s) 556, 582, 1668, 1947, 2023, 2308, 2503
BstH2I RGCGCY 2 cut(s) 1753, 2433
BstHHI GCGC 2 cut(s) 1752, 2432
BstKTI GATC 8 cut(s) 84, 268, 475, 693, 1003, 1014, 1155, 2652
BstMAI GTCTC 5 cut(s) 332, 795, 1195, 1219, 1232
BstMBI GATC 8 cut(s) 81, 265, 472, 690, 1000, 1011, 1152, 2649
BstMCI CGRYCG 1 cut(s) 475
BstMWI GCNNNNNNNGC 8 cut(s) 61, 213, 284, 287, 362, 992, 1477, 1493
BstNI CCWGG 4 cut(s) 548, 975, 1353, 1684
BstNSI RCATGY 1 cut(s) 2648
BstSCI CCNGG 7 cut(s) 546, 973, 1276, 1351, 1682, 2264, 2265
BstV1I GCAGC 7 cut(s) 209, 225, 265, 274, 365, 419, 2125
BstX2I RGATCY 2 cut(s) 265, 690
BstXI CCANNNNNNTGG 1 cut(s) 611
BstYI RGATCY 2 cut(s) 265, 690
Bsu36I CCTNAGG 1 cut(s) 2664
BsuRI GGCC 6 cut(s) 448, 1025, 1276, 2282, 2412, 2684
BtgI CCRYGG 1 cut(s) 644
BtgZI GCGATG 1 cut(s) 582
BtsCI GGATG 7 cut(s) 556, 582, 1668, 1947, 2023, 2308, 2503
BtsI GCAGTG 2 cut(s) 1320, 2098
BtsIMutI CAGTG 4 cut(s) 1320, 1375, 1777, 2098
Cac8I GCNNGC 2 cut(s) 469, 582
CciI TCATGA 2 cut(s) 859, 2172
CfoI GCGC 2 cut(s) 1752, 2432
Cfr13I GGNCC 5 cut(s) 1192, 1275, 1775, 2410, 2711
Cfr9I CCCGGG 1 cut(s) 2265
CseI GACGC 1 cut(s) 2383
Csp6I GTAC 7 cut(s) 517, 873, 1047, 1076, 1135, 1565, 2054
CviAII CATG 9 cut(s) 79, 334, 440, 860, 1484, 1659, 2044, 2173, 2645
CviQI GTAC 7 cut(s) 517, 873, 1047, 1076, 1135, 1565, 2054
DdeI CTNAG 9 cut(s) 91, 483, 594, 805, 921, 1221, 1448, 1599, 2664
DpnI GATC 8 cut(s) 83, 267, 474, 692, 1002, 1013, 1154, 2651
DpnII GATC 8 cut(s) 81, 265, 472, 690, 1000, 1011, 1152, 2649
DraI TTTAAA 1 cut(s) 2119
DrdI GACNNNNNNGTC 1 cut(s) 851
DseDI GACNNNNNNGTC 1 cut(s) 851
EaeI YGGCCR 1 cut(s) 446
Eam1104I CTCTTC 4 cut(s) 288, 681, 793, 993
EarI CTCTTC 4 cut(s) 288, 681, 793, 993
Ecl136II GAGCTC 3 cut(s) 383, 1480, 2597
Eco130I CCWWGG 3 cut(s) 2277, 2506, 2635
Eco147I AGGCCT 1 cut(s) 2684
Eco24I GRGCYC 4 cut(s) 385, 1300, 1482, 2599
Eco31I GGTCTC 1 cut(s) 1195
Eco47I GGWCC 3 cut(s) 1192, 1775, 2711
Eco47III AGCGCT 1 cut(s) 2431
Eco53kI GAGCTC 3 cut(s) 383, 1480, 2597
Eco57I CTGAAG 8 cut(s) 123, 193, 312, 1040, 1351, 2333, 2495, 2663
Eco81I CCTNAGG 1 cut(s) 2664
Eco88I CYCGRG 3 cut(s) 717, 1866, 2265
EcoICRI GAGCTC 3 cut(s) 383, 1480, 2597
EcoRI GAATTC 2 cut(s) 1592, 2096
EcoRII CCWGG 4 cut(s) 546, 973, 1351, 1682
EcoT14I CCWWGG 3 cut(s) 2277, 2506, 2635
EcoT22I ATGCAT 2 cut(s) 497, 2503
EcoT38I GRGCYC 4 cut(s) 385, 1300, 1482, 2599
ErhI CCWWGG 3 cut(s) 2277, 2506, 2635
FaeI CATG 9 cut(s) 82, 337, 443, 863, 1487, 1662, 2047, 2176, 2648
FalI AAGNNNNNCTT 2 cut(s) 1997, 2029
FaqI GGGAC 1 cut(s) 801
FatI CATG 9 cut(s) 78, 333, 439, 859, 1483, 1658, 2043, 2172, 2644
FauI CCCGC 1 cut(s) 2701
FauNDI CATATG 2 cut(s) 1474, 2158
FbaI TGATCA 2 cut(s) 81, 2649
FblI GTMKAC 1 cut(s) 1719
Fnu4HI GCNGC 7 cut(s) 198, 214, 279, 288, 354, 408, 2139
FokI GGATG 7 cut(s) 563, 589, 1675, 1934, 2030, 2315, 2510
FriOI GRGCYC 4 cut(s) 385, 1300, 1482, 2599
Fsp4HI GCNGC 7 cut(s) 198, 214, 279, 288, 354, 408, 2139
GlaI GCGC 2 cut(s) 1751, 2431
GluI GCNGC 7 cut(s) 198, 214, 279, 288, 354, 408, 2139
GsaI CCCAGC 2 cut(s) 576, 1312
GsuI CTGGAG 2 cut(s) 719, 1766
HaeII RGCGCY 2 cut(s) 1753, 2433
HaeIII GGCC 6 cut(s) 448, 1025, 1276, 2282, 2412, 2684
HapII CCGG 3 cut(s) 392, 1278, 2266
HgaI GACGC 1 cut(s) 2383
HhaI GCGC 2 cut(s) 1752, 2432
Hin1II CATG 9 cut(s) 82, 337, 443, 863, 1487, 1662, 2047, 2176, 2648
Hin6I GCGC 2 cut(s) 1750, 2430
HinP1I GCGC 2 cut(s) 1750, 2430
HincII GTYRAC 1 cut(s) 2337
HindII GTYRAC 1 cut(s) 2337
HindIII AAGCTT 1 cut(s) 698
HinfI GANTC 8 cut(s) 226, 803, 845, 882, 1613, 1786, 2024, 2559
HpaII CCGG 3 cut(s) 392, 1278, 2266
HphI GGTGA 8 cut(s) 67, 406, 689, 1136, 1552, 1810, 1936, 2266
Hpy166II GTNNAC 6 cut(s) 519, 680, 1137, 1720, 2337, 2714
Hpy188I TCNGA 8 cut(s) 94, 259, 486, 595, 1224, 1791, 2247, 2374
Hpy8I GTNNAC 6 cut(s) 519, 680, 1137, 1720, 2337, 2714
HpyAV CCTTC 8 cut(s) 251, 307, 1064, 1163, 1375, 1825, 2459, 2470
HpyCH4III ACNGT 7 cut(s) 557, 1046, 1075, 1418, 1564, 2354, 2545
HpyCH4IV ACGT 2 cut(s) 609, 1091
HpyF10VI GCNNNNNNNGC 8 cut(s) 61, 213, 284, 287, 362, 992, 1477, 1493
HpyF3I CTNAG 9 cut(s) 91, 483, 594, 805, 921, 1221, 1448, 1599, 2664
HpySE526I ACGT 2 cut(s) 609, 1091
Hsp92II CATG 9 cut(s) 82, 337, 443, 863, 1487, 1662, 2047, 2176, 2648
HspAI GCGC 2 cut(s) 1750, 2430
Ksp22I TGATCA 2 cut(s) 81, 2649
Kzo9I GATC 8 cut(s) 81, 265, 472, 690, 1000, 1011, 1152, 2649
LguI GCTCTTC 1 cut(s) 993
LmnI GCTCC 7 cut(s) 54, 137, 1485, 1747, 2602, 2641, 2668
Lsp1109I GCAGC 7 cut(s) 209, 225, 265, 274, 365, 419, 2125
LweI GCATC 8 cut(s) 290, 504, 559, 567, 1252, 1531, 2488, 2680
MaeII ACGT 2 cut(s) 609, 1091
MaeIII GTNAC 5 cut(s) 754, 1969, 2035, 2316, 2348
MalI GATC 8 cut(s) 83, 267, 474, 692, 1002, 1013, 1154, 2651
MboI GATC 8 cut(s) 81, 265, 472, 690, 1000, 1011, 1152, 2649
MfeI CAATTG 2 cut(s) 1341, 2259
MflI RGATCY 2 cut(s) 265, 690
MhlI GDGCHC 4 cut(s) 385, 1300, 1482, 2599
MlsI TGGCCA 1 cut(s) 448
MluNI TGGCCA 1 cut(s) 448
MlyI GAGTC 4 cut(s) 220, 797, 839, 1622
MmeI TCCRAC 3 cut(s) 115, 1531, 1975
Mox20I TGGCCA 1 cut(s) 448
Mph1103I ATGCAT 2 cut(s) 497, 2503
MscI TGGCCA 1 cut(s) 448
MslI CAYNNNNRTG 3 cut(s) 77, 161, 2496
Msp20I TGGCCA 1 cut(s) 448
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 3 cut(s) 392, 1278, 2266
MspR9I CCNGG 7 cut(s) 548, 975, 1278, 1353, 1684, 2266, 2267
MunI CAATTG 2 cut(s) 1341, 2259
Mva1269I GAATGC 1 cut(s) 1425
MvaI CCWGG 4 cut(s) 548, 975, 1353, 1684
MwoI GCNNNNNNNGC 8 cut(s) 61, 213, 284, 287, 362, 992, 1477, 1493
NciI CCSGG 3 cut(s) 1278, 2266, 2267
NdeI CATATG 2 cut(s) 1474, 2158
NdeII GATC 8 cut(s) 81, 265, 472, 690, 1000, 1011, 1152, 2649
NheI GCTAGC 1 cut(s) 580
NlaIII CATG 9 cut(s) 82, 337, 443, 863, 1487, 1662, 2047, 2176, 2648
NlaIV GGNNCC 4 cut(s) 50, 377, 1350, 1798
NmuCI GTSAC 3 cut(s) 754, 2316, 2348
NsiI ATGCAT 2 cut(s) 497, 2503
NspI RCATGY 1 cut(s) 2648
PaeR7I CTCGAG 1 cut(s) 1866
PagI TCATGA 2 cut(s) 859, 2172
PceI AGGCCT 1 cut(s) 2684
PciSI GCTCTTC 1 cut(s) 993
PctI GAATGC 1 cut(s) 1425
PfeI GAWTC 4 cut(s) 882, 1786, 2024, 2559
PflMI CCANNNNNTGG 1 cut(s) 1211
PkrI GCNGC 7 cut(s) 199, 215, 280, 289, 355, 409, 2140
Ple19I CGATCG 1 cut(s) 475
PleI GAGTC 4 cut(s) 220, 797, 839, 1621
PpsI GAGTC 4 cut(s) 220, 797, 839, 1621
Ppu21I YACGTR 1 cut(s) 1092
PshBI ATTAAT 1 cut(s) 1901
PsiI TTATAA 2 cut(s) 1527, 1670
Psp124BI GAGCTC 3 cut(s) 385, 1482, 2599
Psp1406I AACGTT 1 cut(s) 609
Psp6I CCWGG 4 cut(s) 546, 973, 1351, 1682
PspFI CCCAGC 2 cut(s) 572, 1308
PspGI CCWGG 4 cut(s) 546, 973, 1351, 1682
PspN4I GGNNCC 4 cut(s) 50, 377, 1350, 1798
PspPI GGNCC 5 cut(s) 1192, 1275, 1775, 2410, 2711
PspXI VCTCGAGB 1 cut(s) 1866
PsuI RGATCY 2 cut(s) 265, 690
PvuI CGATCG 1 cut(s) 475
RsaI GTAC 7 cut(s) 518, 874, 1048, 1077, 1136, 1566, 2055
RsaNI GTAC 7 cut(s) 517, 873, 1047, 1076, 1135, 1565, 2054
RseI CAYNNNNRTG 3 cut(s) 77, 161, 2496
SacI GAGCTC 3 cut(s) 385, 1482, 2599
SapI GCTCTTC 1 cut(s) 993
SatI GCNGC 7 cut(s) 198, 214, 279, 288, 354, 408, 2139
Sau3AI GATC 8 cut(s) 81, 265, 472, 690, 1000, 1011, 1152, 2649
Sau96I GGNCC 5 cut(s) 1192, 1275, 1775, 2410, 2711
ScaI AGTACT 2 cut(s) 1048, 1077
SchI GAGTC 4 cut(s) 220, 797, 839, 1622
ScrFI CCNGG 7 cut(s) 548, 975, 1278, 1353, 1684, 2266, 2267
SduI GDGCHC 4 cut(s) 385, 1300, 1482, 2599
SfaNI GCATC 8 cut(s) 290, 504, 559, 567, 1252, 1531, 2488, 2680
Sfr274I CTCGAG 1 cut(s) 1866
SinI GGWCC 3 cut(s) 1192, 1775, 2711
SlaI CTCGAG 1 cut(s) 1866
SmaI CCCGGG 1 cut(s) 2267
SmiMI CAYNNNNRTG 3 cut(s) 77, 161, 2496
SmlI CTYRAG 5 cut(s) 384, 849, 1866, 1912, 2389
SmoI CTYRAG 5 cut(s) 384, 849, 1866, 1912, 2389
SpeI ACTAGT 1 cut(s) 908
SseBI AGGCCT 1 cut(s) 2684
SsiI CCGC 7 cut(s) 200, 1265, 1406, 1800, 1923, 2694, 2709
SspI AATATT 2 cut(s) 1146, 1162
SstI GAGCTC 3 cut(s) 385, 1482, 2599
StuI AGGCCT 1 cut(s) 2684
StyD4I CCNGG 7 cut(s) 546, 973, 1276, 1351, 1682, 2264, 2265
StyI CCWWGG 3 cut(s) 2277, 2506, 2635
TaaI ACNGT 7 cut(s) 557, 1046, 1075, 1418, 1564, 2354, 2545
TaiI ACGT 2 cut(s) 612, 1094
TaqI TCGA 4 cut(s) 250, 991, 1867, 1980
TaqII GACCGA 1 cut(s) 1590
TatI WGTACW 4 cut(s) 516, 1046, 1075, 1134
TfiI GAWTC 4 cut(s) 882, 1786, 2024, 2559
TscAI CASTG 4 cut(s) 1327, 1375, 1777, 2098
TseFI GTSAC 3 cut(s) 754, 2316, 2348
TseI GCWGC 7 cut(s) 197, 213, 278, 287, 353, 407, 2138
Tsp45I GTSAC 3 cut(s) 754, 2316, 2348
TspDTI ATGAA 9 cut(s) 167, 233, 390, 503, 715, 2016, 2161, 2189, 2538
TspGWI ACGGA 1 cut(s) 2139
TspMI CCCGGG 1 cut(s) 2265
TspRI CASTG 4 cut(s) 1327, 1375, 1777, 2098
Van91I CCANNNNNTGG 1 cut(s) 1211
VpaK11BI GGWCC 3 cut(s) 1192, 1775, 2711
VspI ATTAAT 1 cut(s) 1901
XapI RAATTY 5 cut(s) 978, 1431, 1592, 2096, 2401
XbaI TCTAGA 2 cut(s) 952, 2287
XceI RCATGY 1 cut(s) 2648
XhoI CTCGAG 1 cut(s) 1866
XmaI CCCGGG 1 cut(s) 2265
XmaJI CCTAGG 1 cut(s) 2506
XmiI GTMKAC 1 cut(s) 1719
ZrmI AGTACT 2 cut(s) 1048, 1077
Zsp2I ATGCAT 2 cut(s) 497, 2503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.