Rmu_sc0003630.1_g000043

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003630.1
Physical Location & Seq
Reverse (-)
133748 .. 135474
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003630.1_g000043.1.cds

Sequence Viewer

Length: 1266 bp
atgattcaaaaatctggagatcgaccttcaagcttcaagccttcaacccacagagcttcaaccttcaagtttgtcttggtcgaccctttcgttgacgaagccgcaaagaaggagagaacagagacgcgaaggaagaactggagacaagtgcggctgtgggtactaatagttccagaaaaagctgagcagttagattggacattgataaaacctttctccgggaaaatgtgggtggcaagtggtggcttattagtctacacaatcttgattatatggtttttggagcgcccagctagtccagaattcagtggcccattgaagaatcagattggcgcagcaatttggttcgccatcaactctttgttcttttctcaccgagagagactctataacaacttaactaaagtagttgttgtagtgtggctgtttgttgtattaatcttagtctcaagctacaccgctaatctgtcttcaatcctgaccattcaacgattgagaccaaatgtaacagacatcgaaacgctaaagagtaccaactcaaaagttggtttgaataggcattcatttgtctacaattactctgtgaatgtacttgaattcaaaccagagaacctcatcaaaatacccagtaaatccatctacgcagaggaattcaaaaacaaaggtatatctgctgcattgcttgaattcccatatgcgaaagtatttatgaaccagtactgcaggggatatactgcgaccacactctcctatagatttggaggacaaggctttatatttcagaaagactctccaattgcccgggatttcagcaaggtcattctggagttattagaggagggaacgatgatatcaattgaagatactttgttgacaccaaatcgtgagtgtgctaacaatgcaacttccgatggaccaaaaagtttgaacgtcaagaattttattggactttatgtaatatccggtgctatttacaccatttgccttctattatccttcactctcttgctgaagaagtttcaaaaacaccaggatgcatgccaaggcaatgcaagtgatgaaagtgtttggaacacaacagttagaatggcaaaattcatatataatagagagttcaatgttattccaagcagagctgcaagttctattgatgtgcgggaattgacttcttccccatcggagcatgcgatcacttccacccctcaggatcatcatcttcaggcctccacccccgcacaaactgaaggcagtcaacgtaccacatga

Protein Analysis

421

Amino Acids

47.68

Weight (kDa)

9.4

Isoelectric Point (pI)

32.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 81, 255, 570
AccII CGCG 1 cut(s) 127
AciI CCGC 5 cut(s) 102, 151, 459, 1156, 1233
AclWI GGATC 1 cut(s) 1215
AcsI RAATTY 6 cut(s) 302, 596, 650, 686, 937, 1094
AcuI CTGAAG 3 cut(s) 1031, 1202, 1263
AfaI GTAC 5 cut(s) 162, 532, 591, 719, 1258
AfiI CCNNNNNNNGG 1 cut(s) 218
AjnI CCWGG 1 cut(s) 1029
AluBI AGCT 6 cut(s) 33, 56, 182, 293, 453, 1136
AluI AGCT 6 cut(s) 33, 56, 182, 293, 453, 1136
Alw26I GTCTC 5 cut(s) 116, 136, 376, 451, 490
AlwI GGATC 1 cut(s) 1215
Ama87I CYCGRG 1 cut(s) 801
AoxI GGCC 2 cut(s) 310, 1221
ApeKI GCWGC 3 cut(s) 335, 674, 1136
ApoI RAATTY 6 cut(s) 302, 596, 650, 686, 937, 1094
AseI ATTAAT 1 cut(s) 437
AspLEI GCGC 2 cut(s) 288, 335
AspS9I GGNCC 2 cut(s) 311, 914
AsuC2I CCSGG 3 cut(s) 220, 802, 803
AsuHPI GGTGA 1 cut(s) 365
AvaI CYCGRG 1 cut(s) 801
AvaII GGWCC 1 cut(s) 914
AxyI CCTNAGG 1 cut(s) 1203
BbsI GAAGAC 1 cut(s) 462
BbvI GCAGC 3 cut(s) 347, 661, 1123
BccI CCATC 4 cut(s) 359, 644, 905, 1183
BciT130I CCWGG 1 cut(s) 1031
BcnI CCSGG 3 cut(s) 220, 802, 803
BcoDI GTCTC 5 cut(s) 116, 136, 376, 451, 490
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 2 cut(s) 721, 751
BfoI RGCGCY 1 cut(s) 289
BisI GCNGC 5 cut(s) 102, 152, 336, 675, 1137
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 5 cut(s) 103, 153, 337, 676, 1138
BmcAI AGTACT 1 cut(s) 719
Bme1390I CCNGG 4 cut(s) 220, 802, 803, 1031
Bme18I GGWCC 1 cut(s) 914
BmeT110I CYCGRG 1 cut(s) 801
BmgT120I GGNCC 2 cut(s) 311, 914
BmrFI CCNGG 4 cut(s) 220, 802, 803, 1031
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 1 cut(s) 1024
BmuI ACTGGG 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 462
BplI GAGNNNNNCTC 2 cut(s) 369, 401
BpmI CTGGAG 3 cut(s) 36, 160, 845
Bpu1102I GCTNAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 433
BpuMI CCSGG 3 cut(s) 220, 802, 803
BsaBI GATNNNNATC 1 cut(s) 1212
BsaI GGTCTC 1 cut(s) 490
BsaJI CCNNGG 2 cut(s) 801, 1042
BsaWI WCCGGW 1 cut(s) 962
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 3 cut(s) 143, 627, 715
Bse21I CCTNAGG 1 cut(s) 1203
Bse3DI GCAATG 2 cut(s) 677, 1054
Bse8I GATNNNNATC 1 cut(s) 1212
BseBI CCWGG 1 cut(s) 1031
BseDI CCNNGG 2 cut(s) 801, 1042
BseGI GGATG 1 cut(s) 1039
BseJI GATNNNNATC 1 cut(s) 1212
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMI GCAATG 2 cut(s) 677, 1054
BseMII CTCAG 2 cut(s) 174, 1217
BseNI ACTGG 3 cut(s) 143, 627, 715
BseRI GAGGAG 1 cut(s) 851
BseXI GCAGC 3 cut(s) 347, 661, 1123
BseYI CCCAGC 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 127
BshFI GGCC 2 cut(s) 312, 1223
BsiHKCI CYCGRG 1 cut(s) 801
BsiSI CCGG 3 cut(s) 219, 802, 963
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 5 cut(s) 116, 136, 376, 451, 490
BsmBI CGTCTC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 2 cut(s) 312, 1223
Bso31I GGTCTC 1 cut(s) 490
BsoBI CYCGRG 1 cut(s) 801
Bsp143I GATC 3 cut(s) 19, 1188, 1207
Bsp1720I GCTNAGC 1 cut(s) 183
BspACI CCGC 5 cut(s) 102, 151, 459, 1156, 1233
BspANI GGCC 2 cut(s) 312, 1223
BspCNI CTCAG 2 cut(s) 175, 1216
BspFNI CGCG 1 cut(s) 127
BspMAI CTGCAG 1 cut(s) 725
BspPI GGATC 1 cut(s) 1215
BspTNI GGTCTC 1 cut(s) 490
BsrDI GCAATG 2 cut(s) 677, 1054
BsrI ACTGG 3 cut(s) 143, 627, 715
BssECI CCNNGG 2 cut(s) 801, 1042
BssMI GATC 3 cut(s) 19, 1188, 1207
BssT1I CCWWGG 1 cut(s) 1042
Bst2UI CCWGG 1 cut(s) 1031
Bst4CI ACNGT 1 cut(s) 1081
BstC8I GCNNGC 2 cut(s) 1039, 1185
BstDEI CTNAG 3 cut(s) 183, 442, 1203
BstF5I GGATG 1 cut(s) 1039
BstFNI CGCG 1 cut(s) 127
BstH2I RGCGCY 1 cut(s) 289
BstHHI GCGC 2 cut(s) 288, 335
BstKTI GATC 3 cut(s) 22, 1191, 1210
BstMAI GTCTC 5 cut(s) 116, 136, 376, 451, 490
BstMBI GATC 3 cut(s) 19, 1188, 1207
BstMWI GCNNNNNNNGC 1 cut(s) 899
BstNI CCWGG 1 cut(s) 1031
BstNSI RCATGY 2 cut(s) 1041, 1187
BstSCI CCNGG 4 cut(s) 218, 800, 801, 1029
BstSFI CTRYAG 2 cut(s) 721, 751
BstUI CGCG 1 cut(s) 127
BstV1I GCAGC 3 cut(s) 347, 661, 1123
BstV2I GAAGAC 1 cut(s) 462
Bsu36I CCTNAGG 1 cut(s) 1203
BsuRI GGCC 2 cut(s) 312, 1223
BtsCI GGATG 1 cut(s) 1039
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 1039, 1185
CfoI GCGC 2 cut(s) 288, 335
Cfr13I GGNCC 2 cut(s) 311, 914
Cfr9I CCCGGG 1 cut(s) 801
CseI GACGC 1 cut(s) 133
Csp6I GTAC 5 cut(s) 161, 531, 590, 718, 1257
CviAII CATG 3 cut(s) 1038, 1184, 1263
CviQI GTAC 5 cut(s) 161, 531, 590, 718, 1257
DdeI CTNAG 3 cut(s) 183, 442, 1203
DpnI GATC 3 cut(s) 21, 1190, 1209
DpnII GATC 3 cut(s) 19, 1188, 1207
Eco130I CCWWGG 1 cut(s) 1042
Eco147I AGGCCT 1 cut(s) 1223
Eco31I GGTCTC 1 cut(s) 490
Eco32I GATATC 1 cut(s) 852
Eco47I GGWCC 1 cut(s) 914
Eco57I CTGAAG 3 cut(s) 1031, 1202, 1263
Eco81I CCTNAGG 1 cut(s) 1203
Eco88I CYCGRG 1 cut(s) 801
EcoRI GAATTC 4 cut(s) 302, 596, 650, 686
EcoRII CCWGG 1 cut(s) 1029
EcoRV GATATC 1 cut(s) 852
EcoT14I CCWWGG 1 cut(s) 1042
EcoT22I ATGCAT 1 cut(s) 1039
ErhI CCWWGG 1 cut(s) 1042
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 3 cut(s) 1041, 1187, 1266
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 3 cut(s) 1037, 1183, 1262
FauI CCCGC 2 cut(s) 1149, 1240
FauNDI CATATG 1 cut(s) 694
FblI GTMKAC 3 cut(s) 81, 255, 570
Fnu4HI GCNGC 5 cut(s) 102, 152, 336, 675, 1137
FokI GGATG 1 cut(s) 1046
Fsp4HI GCNGC 5 cut(s) 102, 152, 336, 675, 1137
FspBI CTAG 1 cut(s) 294
GlaI GCGC 2 cut(s) 287, 334
GluI GCNGC 5 cut(s) 102, 152, 336, 675, 1137
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 3 cut(s) 36, 160, 845
HaeII RGCGCY 1 cut(s) 289
HaeIII GGCC 2 cut(s) 312, 1223
HapII CCGG 3 cut(s) 219, 802, 963
HgaI GACGC 1 cut(s) 133
HhaI GCGC 2 cut(s) 288, 335
Hin1II CATG 3 cut(s) 1041, 1187, 1266
Hin6I GCGC 2 cut(s) 286, 333
HinP1I GCGC 2 cut(s) 286, 333
HincII GTYRAC 4 cut(s) 82, 94, 873, 1253
HindII GTYRAC 4 cut(s) 82, 94, 873, 1253
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 4 cut(s) 4, 322, 384, 788
HpaII CCGG 3 cut(s) 219, 802, 963
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 6 cut(s) 82, 94, 256, 571, 873, 1253
Hpy188I TCNGA 4 cut(s) 327, 783, 910, 1180
Hpy188III TCNNGA 9 cut(s) 15, 173, 265, 299, 478, 824, 884, 934, 1205
Hpy8I GTNNAC 6 cut(s) 82, 94, 256, 571, 873, 1253
HpyAV CCTTC 8 cut(s) 36, 51, 73, 103, 123, 995, 1006, 1238
HpyCH4III ACNGT 1 cut(s) 1081
HpyCH4IV ACGT 2 cut(s) 930, 1255
HpyCH4V TGCA 6 cut(s) 677, 723, 902, 1037, 1052, 1139
HpyF10VI GCNNNNNNNGC 1 cut(s) 899
HpyF3I CTNAG 3 cut(s) 183, 442, 1203
HpySE526I ACGT 2 cut(s) 930, 1255
Hsp92II CATG 3 cut(s) 1041, 1187, 1266
HspAI GCGC 2 cut(s) 286, 333
Kzo9I GATC 3 cut(s) 19, 1188, 1207
LmnI GCTCC 2 cut(s) 283, 1180
Lsp1109I GCAGC 3 cut(s) 347, 661, 1123
LweI GCATC 1 cut(s) 1024
MaeI CTAG 1 cut(s) 294
MaeII ACGT 2 cut(s) 930, 1255
MaeIII GTNAC 1 cut(s) 505
MalI GATC 3 cut(s) 21, 1190, 1209
MboI GATC 3 cut(s) 19, 1188, 1207
MboII GAAGA 7 cut(s) 145, 331, 462, 872, 1024, 1161, 1208
MfeI CAATTG 2 cut(s) 795, 855
MlyI GAGTC 2 cut(s) 378, 782
MnlI CCTC 7 cut(s) 623, 640, 755, 829, 832, 1212, 1234
Mph1103I ATGCAT 1 cut(s) 1039
MseI TTAA 2 cut(s) 398, 437
MslI CAYNNNNRTG 1 cut(s) 1032
MspI CCGG 3 cut(s) 219, 802, 963
MspR9I CCNGG 4 cut(s) 220, 802, 803, 1031
MunI CAATTG 2 cut(s) 795, 855
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 1 cut(s) 1031
MvnI CGCG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 899
NciI CCSGG 3 cut(s) 220, 802, 803
NdeI CATATG 1 cut(s) 694
NdeII GATC 3 cut(s) 19, 1188, 1207
NlaIII CATG 3 cut(s) 1041, 1187, 1266
NsiI ATGCAT 1 cut(s) 1039
NspI RCATGY 2 cut(s) 1041, 1187
PaeI GCATGC 2 cut(s) 1041, 1187
PceI AGGCCT 1 cut(s) 1223
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 1184
PctI GAATGC 1 cut(s) 559
PfeI GAWTC 2 cut(s) 4, 322
PfoI TCCNGGA 1 cut(s) 218
PkrI GCNGC 5 cut(s) 103, 153, 337, 676, 1138
PleI GAGTC 2 cut(s) 378, 782
PpsI GAGTC 2 cut(s) 378, 782
PshBI ATTAAT 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 1029
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 1 cut(s) 1029
PspPI GGNCC 2 cut(s) 311, 914
PsrI GAACNNNNNNTAC 2 cut(s) 153, 185
PstI CTGCAG 1 cut(s) 725
RsaI GTAC 5 cut(s) 162, 532, 591, 719, 1258
RsaNI GTAC 5 cut(s) 161, 531, 590, 718, 1257
RseI CAYNNNNRTG 1 cut(s) 1032
SalI GTCGAC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 398, 437
SatI GCNGC 5 cut(s) 102, 152, 336, 675, 1137
Sau3AI GATC 3 cut(s) 19, 1188, 1207
Sau96I GGNCC 2 cut(s) 311, 914
ScaI AGTACT 1 cut(s) 719
SchI GAGTC 2 cut(s) 378, 782
ScrFI CCNGG 4 cut(s) 220, 802, 803, 1031
SfaNI GCATC 1 cut(s) 1024
SfcI CTRYAG 2 cut(s) 721, 751
SinI GGWCC 1 cut(s) 914
SmaI CCCGGG 1 cut(s) 803
SmiMI CAYNNNNRTG 1 cut(s) 1032
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
SphI GCATGC 2 cut(s) 1041, 1187
SseBI AGGCCT 1 cut(s) 1223
SsiI CCGC 5 cut(s) 102, 151, 459, 1156, 1233
SspMI CTAG 1 cut(s) 294
StuI AGGCCT 1 cut(s) 1223
StyD4I CCNGG 4 cut(s) 218, 800, 801, 1029
StyI CCWWGG 1 cut(s) 1042
TaaI ACNGT 1 cut(s) 1081
TaiI ACGT 2 cut(s) 933, 1258
TaqI TCGA 3 cut(s) 22, 81, 516
TatI WGTACW 2 cut(s) 589, 717
TauI GCSGC 2 cut(s) 104, 154
TfiI GAWTC 2 cut(s) 4, 322
Tru1I TTAA 2 cut(s) 398, 437
Tru9I TTAA 2 cut(s) 398, 437
TscAI CASTG 1 cut(s) 313
TseI GCWGC 3 cut(s) 335, 674, 1136
TspDTI ATGAA 4 cut(s) 552, 725, 1074, 1087
TspMI CCCGGG 1 cut(s) 801
TspRI CASTG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 914
VspI ATTAAT 1 cut(s) 437
XapI RAATTY 6 cut(s) 302, 596, 650, 686, 937, 1094
XceI RCATGY 2 cut(s) 1041, 1187
XmaI CCCGGG 1 cut(s) 801
XmiI GTMKAC 3 cut(s) 81, 255, 570
XspI CTAG 1 cut(s) 294
ZrmI AGTACT 1 cut(s) 719
Zsp2I ATGCAT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.