Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002275.1

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Reverse (-)

15514 .. 16977

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002275.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atggatccgaagactttcgatgccggtgttggtgatatcaccataatagcagagcgagtggacaaagtggaattcactcagccatatatcgagtctagtttgtcaataatagttccagaaaaagctgagcaattagagtggatgtttatgaaacctttcaccgggaaaatgtgggcggcaactggtggcatattagtctacacaatcttgattatatggtttttggagcgccttgctaatccagaattcagtggcccagtgatgaatcagattggcacagcaacttggttcgccttcacctctttgttcttttctcacagagagaaaatctataacaacttaactcgagtagttgttgtaatgtggttatttgttgtattgatcctaacctcaagctacaccgctaatctatcatcaatgctcaccattcaacgattgaaaccaaatgtaacagacatcgaaatgctaataagaactaactcaacagttggctcgaatagggattcatttgtcgtcaattacttgaagaatgttggcttcaatcgagagaacatcatcaaaacagacagggaatccaacttcattgaggagttcgaaagtaaacgtatatctgctgccttgcttgaactcccatatgccaaagtattcatgaacaagtactgcaagggatatactgcgaccacactacccttctatagattcgggggactagcatttatatttcagaaggactctccaattgcccgggatttcaccaaggtcattctagagttattggagcagggaaaaatgatgtcacttgaagatgcttggttgacaccgaaaagtgagtgtcgaaacaatgcaacttccaatggacccgaaagtttgaacgtcaagaattttatgggcctttatgtaatatttggtgttacttccaccatttgccttctattatcctgcgctatcttgctgaagaaacacgaagatgcatacccaggcaatgcaagtggcgaaagtgtttggaataggatagttagaatagcaaaattcctatataatagacagattccaagtagagctacaagttttgctgatgtgccggaattgagtacttcttccgagctggaatgcgtgaccacttctgccacttgggagcatcatcctcacacctccattccagcacaaactgaaggcactccaccacatgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

397

Amino Acids

44.94

Weight (kDa)

6.15

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	2 cut(s)	176, 402
AclWI	GGATC	2 cut(s)	12, 376
AcsI	RAATTY	4 cut(s)	71, 245, 880, 1028
AcuI	CTGAAG	2 cut(s)	974, 1191
AfaI	GTAC	2 cut(s)	659, 1093
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	7 cut(s)	431, 439, 526, 541, 626, 803, 871
AjnI	CCWGG	1 cut(s)	976
AluBI	AGCT	4 cut(s)	125, 396, 1061, 1105
AluI	AGCT	4 cut(s)	125, 396, 1061, 1105
AlwI	GGATC	2 cut(s)	12, 376
Ama87I	CYCGRG	2 cut(s)	345, 744
AoxI	GGCC	2 cut(s)	253, 889
ApeKI	GCWGC	1 cut(s)	614
ApoI	RAATTY	4 cut(s)	71, 245, 880, 1028
Asp700I	GAANNNNTTC	2 cut(s)	14, 155
AspLEI	GCGC	2 cut(s)	231, 944
AspS9I	GGNCC	3 cut(s)	254, 857, 889
AsuC2I	CCSGG	3 cut(s)	163, 745, 746
AsuHPI	GGTGA	6 cut(s)	31, 44, 151, 289, 415, 745
AsuII	TTCGAA	1 cut(s)	594
AvaI	CYCGRG	2 cut(s)	345, 744
AvaII	GGWCC	1 cut(s)	857
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	601
BciT130I	CCWGG	1 cut(s)	978
BcnI	CCSGG	3 cut(s)	163, 745, 746
BfaI	CTAG	3 cut(s)	96, 710, 767
BfmI	CTRYAG	1 cut(s)	694
BfoI	RGCGCY	1 cut(s)	232
BisI	GCNGC	2 cut(s)	177, 615
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	2 cut(s)	178, 616
BmcAI	AGTACT	2 cut(s)	659, 1093
Bme1390I	CCNGG	4 cut(s)	163, 745, 746, 978
Bme18I	GGWCC	1 cut(s)	857
BmeT110I	CYCGRG	2 cut(s)	345, 744
BmgT120I	GGNCC	3 cut(s)	254, 857, 889
BmiI	GGNNCC	2 cut(s)	6, 859
BmrFI	CCNGG	4 cut(s)	163, 745, 746, 978
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	4 cut(s)	10, 796, 958, 1147
BmuI	ACTGGG	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	17
Bpu1102I	GCTNAGC	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	376
BpuMI	CCSGG	3 cut(s)	163, 745, 746
BsaJI	CCNNGG	3 cut(s)	744, 756, 976
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	187, 257
Bse3DI	GCAATG	1 cut(s)	988
BseBI	CCWGG	1 cut(s)	978
BseDI	CCNNGG	3 cut(s)	744, 756, 976
BseGI	GGATG	2 cut(s)	147, 1141
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	988
BseMII	CTCAG	2 cut(s)	92, 117
BseNI	ACTGG	2 cut(s)	187, 257
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	1 cut(s)	601
BshFI	GGCC	2 cut(s)	255, 891
BsiHKCI	CYCGRG	2 cut(s)	345, 744
BsiSI	CCGG	4 cut(s)	24, 162, 745, 1082
BslFI	GGGAC	1 cut(s)	720
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	720
BsmI	GAATGC	1 cut(s)	1115
BsnI	GGCC	2 cut(s)	255, 891
BsoBI	CYCGRG	2 cut(s)	345, 744
Bsp119I	TTCGAA	1 cut(s)	594
Bsp143I	GATC	2 cut(s)	4, 381
Bsp1720I	GCTNAGC	1 cut(s)	126
BspACI	CCGC	2 cut(s)	176, 402
BspANI	GGCC	2 cut(s)	255, 891
BspCNI	CTCAG	2 cut(s)	91, 118
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	2 cut(s)	6, 859
BspPI	GGATC	2 cut(s)	12, 376
BspT104I	TTCGAA	1 cut(s)	594
BsrDI	GCAATG	1 cut(s)	988
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	187, 257
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	744, 756, 976
BssMI	GATC	2 cut(s)	4, 381
BssT1I	CCWWGG	1 cut(s)	756
Bst2UI	CCWGG	1 cut(s)	978
Bst4CI	ACNGT	1 cut(s)	487
BstBI	TTCGAA	1 cut(s)	594
BstDEI	CTNAG	2 cut(s)	78, 126
BstF5I	GGATG	2 cut(s)	147, 1141
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	2 cut(s)	231, 944
BstKTI	GATC	2 cut(s)	7, 384
BstMBI	GATC	2 cut(s)	4, 381
BstNI	CCWGG	1 cut(s)	978
BstSCI	CCNGG	4 cut(s)	161, 743, 744, 976
BstSFI	CTRYAG	1 cut(s)	694
BstV1I	GCAGC	1 cut(s)	601
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	255, 891
BtsCI	GGATG	2 cut(s)	147, 1141
BtsIMutI	CAGTG	2 cut(s)	256, 264
CciI	TCATGA	1 cut(s)	648
CfoI	GCGC	2 cut(s)	231, 944
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	3 cut(s)	254, 857, 889
Cfr9I	CCCGGG	1 cut(s)	744
Csp6I	GTAC	2 cut(s)	658, 1092
CspCI	CAANNNNNGTGG	4 cut(s)	119, 154, 970, 1005
CviAII	CATG	2 cut(s)	649, 1187
CviJI	RGCY	9 cut(s)	82, 125, 255, 396, 492, 537, 891, 1061, 1105
CviKI_1	RGCY	9 cut(s)	82, 125, 255, 396, 492, 537, 891, 1061, 1105
CviQI	GTAC	2 cut(s)	658, 1092
DdeI	CTNAG	2 cut(s)	78, 126
DpnI	GATC	2 cut(s)	6, 383
DpnII	GATC	2 cut(s)	4, 381
Eco130I	CCWWGG	1 cut(s)	756
Eco32I	GATATC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	857
Eco57I	CTGAAG	2 cut(s)	974, 1191
Eco88I	CYCGRG	2 cut(s)	345, 744
EcoRI	GAATTC	2 cut(s)	71, 245
EcoRII	CCWGG	1 cut(s)	976
EcoRV	GATATC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	756
EcoT22I	ATGCAT	1 cut(s)	973
ErhI	CCWWGG	1 cut(s)	756
FaeI	CATG	2 cut(s)	652, 1190
FaqI	GGGAC	1 cut(s)	720
FatI	CATG	2 cut(s)	648, 1186
FauNDI	CATATG	1 cut(s)	634
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	2 cut(s)	177, 615
FokI	GGATG	2 cut(s)	154, 1128
Fsp4HI	GCNGC	2 cut(s)	177, 615
FspBI	CTAG	3 cut(s)	96, 710, 767
GlaI	GCGC	2 cut(s)	230, 943
GluI	GCNGC	2 cut(s)	177, 615
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	2 cut(s)	255, 891
HapII	CCGG	4 cut(s)	24, 162, 745, 1082
HhaI	GCGC	2 cut(s)	231, 944
Hin1II	CATG	2 cut(s)	652, 1190
Hin6I	GCGC	2 cut(s)	229, 942
HinP1I	GCGC	2 cut(s)	229, 942
HincII	GTYRAC	1 cut(s)	816
HindII	GTYRAC	1 cut(s)	816
HinfI	GANTC	7 cut(s)	92, 265, 503, 572, 699, 731, 1048
HpaII	CCGG	4 cut(s)	24, 162, 745, 1082
HphI	GGTGA	6 cut(s)	31, 44, 151, 289, 415, 745
Hpy166II	GTNNAC	4 cut(s)	61, 199, 602, 816
Hpy188I	TCNGA	4 cut(s)	9, 270, 726, 1102
Hpy188III	TCNNGA	7 cut(s)	116, 208, 242, 545, 649, 767, 877
Hpy8I	GTNNAC	4 cut(s)	61, 199, 602, 816
HpyAV	CCTTC	5 cut(s)	304, 700, 721, 938, 1166
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	2 cut(s)	604, 873
HpyCH4V	TGCA	4 cut(s)	663, 845, 971, 986
HpyF3I	CTNAG	2 cut(s)	78, 126
HpySE526I	ACGT	2 cut(s)	604, 873
Hsp92II	CATG	2 cut(s)	652, 1190
HspAI	GCGC	2 cut(s)	229, 942
Kzo9I	GATC	2 cut(s)	4, 381
LmnI	GCTCC	3 cut(s)	226, 778, 1135
Lsp1109I	GCAGC	1 cut(s)	601
LweI	GCATC	4 cut(s)	10, 796, 958, 1147
MaeI	CTAG	3 cut(s)	96, 710, 767
MaeII	ACGT	2 cut(s)	604, 873
MaeIII	GTNAC	4 cut(s)	448, 795, 910, 1114
MalI	GATC	2 cut(s)	6, 383
MboI	GATC	2 cut(s)	4, 381
MboII	GAAGA	6 cut(s)	22, 538, 815, 967, 977, 1089
MfeI	CAATTG	1 cut(s)	738
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	8 cut(s)	71, 131, 245, 517, 738, 880, 1028, 1085
MlyI	GAGTC	2 cut(s)	101, 725
MmeI	TCCRAC	1 cut(s)	600
MnlI	CCTC	5 cut(s)	310, 400, 580, 1155, 1162
Mph1103I	ATGCAT	1 cut(s)	973
MroXI	GAANNNNTTC	2 cut(s)	14, 155
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	2 cut(s)	461, 966
MspI	CCGG	4 cut(s)	24, 162, 745, 1082
MspR9I	CCNGG	4 cut(s)	163, 745, 746, 978
MunI	CAATTG	1 cut(s)	738
Mva1269I	GAATGC	1 cut(s)	1115
MvaI	CCWGG	1 cut(s)	978
NciI	CCSGG	3 cut(s)	163, 745, 746
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	2 cut(s)	4, 381
NlaIII	CATG	2 cut(s)	652, 1190
NlaIV	GGNNCC	2 cut(s)	6, 859
NmuCI	GTSAC	2 cut(s)	795, 1114
NsiI	ATGCAT	1 cut(s)	973
NspV	TTCGAA	1 cut(s)	594
PaeR7I	CTCGAG	1 cut(s)	345
PagI	TCATGA	1 cut(s)	648
PctI	GAATGC	1 cut(s)	1115
PdmI	GAANNNNTTC	2 cut(s)	14, 155
PfeI	GAWTC	5 cut(s)	265, 503, 572, 699, 1048
PkrI	GCNGC	2 cut(s)	178, 616
PleI	GAGTC	2 cut(s)	100, 725
PpsI	GAGTC	2 cut(s)	100, 725
Psp6I	CCWGG	1 cut(s)	976
PspGI	CCWGG	1 cut(s)	976
PspN4I	GGNNCC	2 cut(s)	6, 859
PspPI	GGNCC	3 cut(s)	254, 857, 889
PspXI	VCTCGAGB	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	659, 1093
RsaNI	GTAC	2 cut(s)	658, 1092
RseI	CAYNNNNRTG	2 cut(s)	461, 966
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	2 cut(s)	177, 615
Sau3AI	GATC	2 cut(s)	4, 381
Sau96I	GGNCC	3 cut(s)	254, 857, 889
ScaI	AGTACT	2 cut(s)	659, 1093
SchI	GAGTC	2 cut(s)	101, 725
ScrFI	CCNGG	4 cut(s)	163, 745, 746, 978
SfaNI	GCATC	4 cut(s)	10, 796, 958, 1147
SfcI	CTRYAG	1 cut(s)	694
Sfr274I	CTCGAG	1 cut(s)	345
SfuI	TTCGAA	1 cut(s)	594
SinI	GGWCC	1 cut(s)	857
SlaI	CTCGAG	1 cut(s)	345
SmaI	CCCGGG	1 cut(s)	746
SmiMI	CAYNNNNRTG	2 cut(s)	461, 966
SmlI	CTYRAG	2 cut(s)	345, 391
SmoI	CTYRAG	2 cut(s)	345, 391
Sse9I	AATT	8 cut(s)	71, 131, 245, 517, 738, 880, 1028, 1085
SsiI	CCGC	2 cut(s)	176, 402
SspI	AATATT	1 cut(s)	903
SspMI	CTAG	3 cut(s)	96, 710, 767
StyD4I	CCNGG	4 cut(s)	161, 743, 744, 976
StyI	CCWWGG	1 cut(s)	756
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	2 cut(s)	607, 876
TaqI	TCGA	8 cut(s)	18, 90, 346, 459, 494, 544, 594, 835
TasI	AATT	8 cut(s)	71, 131, 245, 517, 738, 880, 1028, 1085
TatI	WGTACW	2 cut(s)	657, 1091
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	5 cut(s)	265, 503, 572, 699, 1048
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	2 cut(s)	256, 264
TseFI	GTSAC	2 cut(s)	795, 1114
TseI	GCWGC	1 cut(s)	614
Tsp45I	GTSAC	2 cut(s)	795, 1114
TspDTI	ATGAA	6 cut(s)	164, 278, 495, 571, 637, 665
TspMI	CCCGGG	1 cut(s)	744
TspRI	CASTG	2 cut(s)	256, 264
VpaK11BI	GGWCC	1 cut(s)	857
XapI	RAATTY	4 cut(s)	71, 245, 880, 1028
XbaI	TCTAGA	1 cut(s)	766
XhoI	CTCGAG	1 cut(s)	345
XmaI	CCCGGG	1 cut(s)	744
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	2 cut(s)	14, 155
XspI	CTAG	3 cut(s)	96, 710, 767
ZrmI	AGTACT	2 cut(s)	659, 1093
Zsp2I	ATGCAT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.