RchiOBHm_Chr5g0009981

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
6633387 .. 6638744
5358 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29080

Sequence Viewer

Length: 2772 bp
ATGGCTTTTCCTTGTAAGTTGACCTTTAACAAAATCGAAAGACTTTGGCATCTGCTTCCTCTGCTCATCATAATCATCATTATCACTGTCTCTGATGGAGCTGAAGCTGAAAATGAGAAAATTGTCACCAATCTTGGAGCAATCGTTAATCTGAATTCTCGTATGGGCAAAGAACAGAAAATTGCTATGGATATTGCAGCTGAAAATTTCAGGAACCTTTCAAAGACTCATAGCCTAATCATTCATTTTCGACATTCTGACAGAGATCCCTTTACAGCTGCTTCTGCTGCTGAAGAGTTGATAAAGGAGAAGAAAGTAAAAGTGCTAATTGGCATGGAGACTTGGCAGGAAGCAGTTCAAGTAGCTGATGTGGGGAACCGAACTCAAGTTCCAGTGATTTCATTTGCAGCACCTACTATAACCCCACCTCTCATCCAACGCAAGTGGCCATTTTTGATACGAGTGGCAAGCGATGTTGGTGCTCAGATCAAATGCATTGCAGATATAGTTTCTTTGTACAGTTGGAAAAGGGTAATTGCAATATACGAGGATGATGGTTATGGTGGTAATGCTGGGATGCTAGCTCTTTTATTTGAGGCACTCCAAGACGTTGGTTCAAAGATTGAGCATCATTTGGTTCTCCCACGGGTTTCTTCTATGTCTAATTTTAGTTGGGGTGAACTAGAGGAGATGCTGAAGCTTCCCAGCTTTCAATCTCGGGTCTTCATTGTTCTTCAGTCATCTTTACCAACAGTGACTAATCTATTCAGGGTGGCGAAGAAGATGGGACTTGTAGGAAGAGACTCGGCTTGGTTAATCACAGAGAGTATTACTAGATTACTTGACCCTCAAGTCAATCATGATATGGAAGGTACTCTGGGAATCAAGACCTACTATGCCAATAATACCAGTTCCTATGTCAAGTTCAGCAAGGTATTTCGAAAAAAGTATCCAGAGAAAAATAACCCCGAGCCAGGAATATATGCTCTTCAAGCATACGATCTAACTAGAATCGTAACTCAGGCCATAAGAATGACCGGTAACAGTACCACTAACCTTCAGGTAGTGTTGAATACAGTGTTAAGCAATTGCATGGGTTTAAGAGGGGAAATGCTCTTCAAAGGAGGTGAAGTGTTGTACTCTCCAATATTCAGGATCATAAATGTTGTGGAAGGGAACAGGTACAAAGAGTTGGACTTTTGGAGACCAGATATTGGATTCTCAGAAAGCCTTGCACAGCAAACAAGCATAAACAGAAGAGATGATGTTGGTACAGTTGTTTGGCCTGGGAATCTAAGCCAACGAGCCCCCAAAGGCTGGGCAATGCCTACTGCTGAGAAGCCAATGATAATTGGGGTTCCTAATGGTTCCTTCCCCGCATTTGTAAACGTTAGTTCAGATGGAAAGAGTGTTGACGGTTTCTGCATTGAGCTTTTCAAAACGGTCGTAAATTGTTTGAATTATCCTCTGCCCGTCGAATTCCGATACGTTAATTGCCCCTATGATGATTTGGTAGAACTAGTCCATAACAAGACTTTCGATGCCGGTGTTGGTGATATCACCATAATAGCAGAGCGAGTGGACAAAGTGGAATTCACTCAGCCATATACCGAGTCTAGTTTGTCAATAATAGTTCCAGAAAAAGCTGAGCAATTAGAGTGGATGTTTATAAAACCTTTCACCGGGAAAATGTGGGCGGCAACTGGTGGCATATTAGTCTACACAATCTTGATTATATGGTTTTTGGAGCGCCTTGCTAATCCAGAATTCAGTGGCCCATTGATGAATCAGATTGGCACAGCAACTTGGTTCGCCTTCACCTCTTTGTTCTTTTCTCACAGAGAGAAAATCTATAACAACTTAACTCGAGTAGTTGTTGTGATGTGGTTATTTGTTGTATTGATCCTAACCTCAAGCTACACCGCTAATCTGTCATCAATGCTCACCATTCAACGATTGAAACCAAATGTAACAGACATCGAAATGCTAATAAGAACTAACTCCACAGTTGGCTCGAATAGGGATTCATTTGTCGTCAATTACTTGAAGAATGTTGGCTTCAATCAAGAGAACATCGTCAAAACAGACAGGGAATCCAACTTCATTGAGGAGTTCGAAAGTAAACGTATATCTGCTGCCTTGCTTGAACTCCCATATGCGAAAGTATTCATGAACAAGTACTGCAAGGGATATACTGTGACCACACTACCCTTCTATAGATTTGGGGGACTAGCATTTGTGAGTTGTGACCATTGTTTCTTTTGTGCTGTTCTTTTTTCGTTTCCTGTTTTATGCCTTTCTAACAGAGAGACCATACTGAGTCTAAACAACGAAACTAATAAAAGTACCTTGCAGATATTTCAGAAGGACTCTCCAATTGCCCGGGATTTCACCAAGGTCATTCTAGAGTTATTGGAGCAGGGAAAAATGATGTCACTTGAAGATACTTGGTTGACACCGAAAAGTGAGTGTCGAAACAATGCAACTTCCAATGGACCCGAAAGTTTGAACGTCAAGAATTTTATGGGCCTTTATGTAATATTTGGTGTTACTTCCACCATTTGCCTTGTATTATCCTTCGCTATCTTGCTGAAGAAACACGAGGGTGCATACCCAGGCAATGCAAGTGGCGAAAGTGTTTGGAATAGGATAGCTAGAATAGCAAAATTCCTATATAATAGACAGATTCCAATTAGAGCTCCAAGGTTTGCTGATGTGCCGGAATTGACTACTTCTTCCGAGCTGGAATGCGTGACCACTTCTGCCACTTAG

Protein Analysis

923

Amino Acids

103.89

Weight (kDa)

8.03

Isoelectric Point (pI)

32.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 60 - 354 1.6e-34 Receptor family ligand binding region
Peripla_BP_6 PF13458 88 - 355 7.6e-15 Periplasmic binding protein
SBP_bac_3 PF00497 456 - 819 2.1e-14 Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd PF10613 467 - 547 1.2e-06 Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan PF00060 563 - 850 6.6e-30 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1670
AasI GACNNNNNNGTC 1 cut(s) 851
AccB7I CCANNNNNTGG 2 cut(s) 1214, 1317
AccI GTMKAC 1 cut(s) 1719
AciI CCGC 3 cut(s) 1377, 1697, 1923
AclI AACGTT 1 cut(s) 1389
AclWI GGATC 3 cut(s) 260, 1163, 1897
AcoI YGGCCR 1 cut(s) 446
AcsI RAATTY 7 cut(s) 154, 205, 1478, 1592, 1766, 2518, 2666
AcuI CTGAAG 6 cut(s) 123, 312, 716, 719, 1043, 2612
AfaI GTAC 8 cut(s) 518, 874, 1048, 1139, 1184, 1273, 2180, 2347
AfiI CCNNNNNNNGG 4 cut(s) 974, 1214, 1317, 1682
AgeI ACCGGT 1 cut(s) 1037
AhlI ACTAGT 1 cut(s) 1519
AjnI CCWGG 3 cut(s) 973, 1285, 2614
AleI CACNNNNGTG 1 cut(s) 2604
AloI GAACNNNNNNTCC 2 cut(s) 373, 405
Alw21I GWGCWC 2 cut(s) 484, 2701
Alw26I GTCTC 5 cut(s) 94, 332, 795, 1198, 2303
AlwI GGATC 3 cut(s) 260, 1163, 1897
Ama87I CYCGRG 4 cut(s) 717, 968, 1866, 2382
AoxI GGCC 5 cut(s) 446, 1023, 1283, 1774, 2527
ApeKI GCWGC 5 cut(s) 197, 278, 287, 407, 2135
ApoI RAATTY 7 cut(s) 154, 205, 1478, 1592, 1766, 2518, 2666
AsiGI ACCGGT 1 cut(s) 1037
Asp700I GAANNNNTTC 2 cut(s) 354, 2165
AspLEI GCGC 1 cut(s) 1752
AspS9I GGNCC 3 cut(s) 1775, 2495, 2527
AsuC2I CCSGG 3 cut(s) 1684, 2383, 2384
AsuHPI GGTGA 9 cut(s) 118, 689, 1139, 1552, 1565, 1672, 1810, 1936, 2383
AsuII TTCGAA 2 cut(s) 940, 2115
AsuNHI GCTAGC 1 cut(s) 580
AvaI CYCGRG 4 cut(s) 717, 968, 1866, 2382
AvaII GGWCC 1 cut(s) 2495
BaeI ACNNNNGTAYC 2 cut(s) 1263, 1296
BalI TGGCCA 1 cut(s) 448
BanII GRGCYC 2 cut(s) 1309, 2701
BauI CACGAG 1 cut(s) 2600
BbsI GAAGAC 1 cut(s) 715
Bbv12I GWGCWC 2 cut(s) 484, 2701
BbvI GCAGC 5 cut(s) 209, 265, 274, 419, 2122
BccI CCATC 4 cut(s) 89, 548, 778, 1394
BcgI CGANNNNNNTGC 2 cut(s) 461, 495
BciT130I CCWGG 3 cut(s) 975, 1287, 2616
BciVI GTATCC 1 cut(s) 960
BcnI CCSGG 3 cut(s) 1684, 2383, 2384
BcoDI GTCTC 5 cut(s) 94, 332, 795, 1198, 2303
BcuI ACTAGT 1 cut(s) 1519
BfaI CTAG 9 cut(s) 581, 683, 834, 1008, 1520, 1617, 2231, 2405, 2655
BfmI CTRYAG 1 cut(s) 2215
BfoI RGCGCY 1 cut(s) 1753
BfuI GTATCC 1 cut(s) 960
BisI GCNGC 6 cut(s) 198, 279, 288, 408, 1698, 2136
BlpI GCTNAGC 1 cut(s) 1647
BlsI GCNGC 6 cut(s) 199, 280, 289, 409, 1699, 2137
BmcAI AGTACT 1 cut(s) 2180
Bme1390I CCNGG 6 cut(s) 975, 1287, 1684, 2383, 2384, 2616
Bme18I GGWCC 1 cut(s) 2495
BmeT110I CYCGRG 4 cut(s) 717, 968, 1866, 2382
BmgT120I GGNCC 3 cut(s) 1775, 2495, 2527
BmiI GGNNCC 5 cut(s) 215, 377, 1359, 1369, 2497
BmrFI CCNGG 6 cut(s) 975, 1287, 1684, 2383, 2384, 2616
BmsI GCATC 5 cut(s) 58, 567, 637, 681, 1531
BmtI GCTAGC 1 cut(s) 584
BpiI GAAGAC 1 cut(s) 715
Bpu1102I GCTNAGC 1 cut(s) 1647
Bpu14I TTCGAA 2 cut(s) 940, 2115
BpuEI CTTGAG 3 cut(s) 369, 834, 1897
BpuMI CCSGG 3 cut(s) 1684, 2383, 2384
BsaI GGTCTC 2 cut(s) 1198, 2303
BsaJI CCNNGG 6 cut(s) 644, 1286, 2382, 2394, 2614, 2702
BsaWI WCCGGW 1 cut(s) 1037
BsaXI ACNNNNNCTCC 4 cut(s) 129, 159, 1116, 1146
Bsc4I CCNNNNNNNGG 4 cut(s) 974, 1214, 1317, 1682
Bse118I RCCGGY 2 cut(s) 1037, 1544
Bse1I ACTGG 3 cut(s) 392, 909, 1708
Bse3DI GCAATG 3 cut(s) 495, 1329, 2626
BseBI CCWGG 3 cut(s) 975, 1287, 2616
BseDI CCNNGG 6 cut(s) 644, 1286, 2382, 2394, 2614, 2702
BseGI GGATG 4 cut(s) 432, 556, 582, 1668
BseLI CCNNNNNNNGG 4 cut(s) 974, 1214, 1317, 1682
BseMI GCAATG 3 cut(s) 495, 1329, 2626
BseMII CTCAG 7 cut(s) 497, 1034, 1236, 1326, 1613, 1638, 2309
BseNI ACTGG 3 cut(s) 392, 909, 1708
BseRI GAGGAG 2 cut(s) 701, 2123
BseXI GCAGC 5 cut(s) 209, 265, 274, 419, 2122
BseYI CCCAGC 3 cut(s) 572, 704, 1317
Bsh1285I CGRYCG 1 cut(s) 1446
BshFI GGCC 5 cut(s) 448, 1025, 1285, 1776, 2529
BshTI ACCGGT 1 cut(s) 1037
BsiEI CGRYCG 1 cut(s) 1446
BsiHKAI GWGCWC 2 cut(s) 484, 2701
BsiHKCI CYCGRG 4 cut(s) 717, 968, 1866, 2382
BsiSI CCGG 5 cut(s) 1038, 1545, 1683, 2383, 2720
BslFI GGGAC 2 cut(s) 801, 2241
BslI CCNNNNNNNGG 4 cut(s) 974, 1214, 1317, 1682
BsmAI GTCTC 5 cut(s) 94, 332, 795, 1198, 2303
BsmFI GGGAC 2 cut(s) 801, 2241
BsmI GAATGC 1 cut(s) 2753
BsnI GGCC 5 cut(s) 448, 1025, 1285, 1776, 2529
Bso31I GGTCTC 2 cut(s) 1198, 2303
BsoBI CYCGRG 4 cut(s) 717, 968, 1866, 2382
Bsp119I TTCGAA 2 cut(s) 940, 2115
Bsp1286I GDGCHC 3 cut(s) 484, 1309, 2701
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 5 cut(s) 265, 486, 1000, 1155, 1902
Bsp1720I GCTNAGC 1 cut(s) 1647
BspACI CCGC 3 cut(s) 1377, 1697, 1923
BspANI GGCC 5 cut(s) 448, 1025, 1285, 1776, 2529
BspCNI CTCAG 7 cut(s) 496, 1033, 1235, 1327, 1612, 1639, 2310
BspHI TCATGA 2 cut(s) 859, 2169
BspLI GGNNCC 5 cut(s) 215, 377, 1359, 1369, 2497
BspOI GCTAGC 1 cut(s) 584
BspPI GGATC 3 cut(s) 260, 1163, 1897
BspQI GCTCTTC 2 cut(s) 993, 1121
BspT104I TTCGAA 2 cut(s) 940, 2115
BspTNI GGTCTC 2 cut(s) 1198, 2303
BsrDI GCAATG 3 cut(s) 495, 1329, 2626
BsrFI RCCGGY 2 cut(s) 1037, 1544
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 3 cut(s) 392, 909, 1708
BssAI RCCGGY 2 cut(s) 1037, 1544
BssECI CCNNGG 6 cut(s) 644, 1286, 2382, 2394, 2614, 2702
BssMI GATC 5 cut(s) 265, 486, 1000, 1155, 1902
BssSI CACGAG 1 cut(s) 2600
BssT1I CCWWGG 2 cut(s) 2394, 2702
Bst2BI CACGAG 1 cut(s) 2600
Bst2UI CCWGG 3 cut(s) 975, 1287, 2616
Bst6I CTCTTC 5 cut(s) 288, 793, 993, 1121, 1252
BstAUI TGTACA 1 cut(s) 516
BstBI TTCGAA 2 cut(s) 940, 2115
BstC8I GCNNGC 2 cut(s) 469, 582
BstDEI CTNAG 9 cut(s) 483, 1020, 1222, 1295, 1335, 1599, 1647, 2318, 2769
BstDSI CCRYGG 1 cut(s) 644
BstF5I GGATG 4 cut(s) 432, 556, 582, 1668
BstH2I RGCGCY 1 cut(s) 1753
BstHHI GCGC 1 cut(s) 1752
BstKTI GATC 5 cut(s) 268, 489, 1003, 1158, 1905
BstMAI GTCTC 5 cut(s) 94, 332, 795, 1198, 2303
BstMBI GATC 5 cut(s) 265, 486, 1000, 1155, 1902
BstMCI CGRYCG 1 cut(s) 1446
BstMWI GCNNNNNNNGC 5 cut(s) 61, 284, 287, 992, 2660
BstNI CCWGG 3 cut(s) 975, 1287, 2616
BstSCI CCNGG 6 cut(s) 973, 1285, 1682, 2381, 2382, 2614
BstSFI CTRYAG 1 cut(s) 2215
BstV1I GCAGC 5 cut(s) 209, 265, 274, 419, 2122
BstV2I GAAGAC 1 cut(s) 715
BstX2I RGATCY 1 cut(s) 265
BstXI CCANNNNNNTGG 1 cut(s) 611
BstYI RGATCY 1 cut(s) 265
BsuI GTATCC 1 cut(s) 960
BsuRI GGCC 5 cut(s) 448, 1025, 1285, 1776, 2529
BtgI CCRYGG 1 cut(s) 644
BtgZI GCGATG 1 cut(s) 486
BtsCI GGATG 4 cut(s) 432, 556, 582, 1668
BtsIMutI CAGTG 5 cut(s) 84, 399, 759, 1083, 1777
Cac8I GCNNGC 2 cut(s) 469, 582
CciI TCATGA 2 cut(s) 859, 2169
CfoI GCGC 1 cut(s) 1752
Cfr10I RCCGGY 2 cut(s) 1037, 1544
Cfr13I GGNCC 3 cut(s) 1775, 2495, 2527
Cfr9I CCCGGG 1 cut(s) 2382
Csp6I GTAC 8 cut(s) 517, 873, 1047, 1138, 1183, 1272, 2179, 2346
CspAI ACCGGT 1 cut(s) 1037
CspCI CAANNNNNGTGG 6 cut(s) 425, 460, 1640, 1675, 2608, 2643
CviAII CATG 4 cut(s) 334, 860, 1093, 2170
CviQI GTAC 8 cut(s) 517, 873, 1047, 1138, 1183, 1272, 2179, 2346
DdeI CTNAG 9 cut(s) 483, 1020, 1222, 1295, 1335, 1599, 1647, 2318, 2769
DpnI GATC 5 cut(s) 267, 488, 1002, 1157, 1904
DpnII GATC 5 cut(s) 265, 486, 1000, 1155, 1902
DrdI GACNNNNNNGTC 1 cut(s) 851
DseDI GACNNNNNNGTC 1 cut(s) 851
EaeI YGGCCR 1 cut(s) 446
Eam1104I CTCTTC 5 cut(s) 288, 793, 993, 1121, 1252
EarI CTCTTC 5 cut(s) 288, 793, 993, 1121, 1252
Ecl136II GAGCTC 1 cut(s) 2699
Eco130I CCWWGG 2 cut(s) 2394, 2702
Eco24I GRGCYC 2 cut(s) 1309, 2701
Eco31I GGTCTC 2 cut(s) 1198, 2303
Eco32I GATATC 1 cut(s) 1558
Eco47I GGWCC 1 cut(s) 2495
Eco53kI GAGCTC 1 cut(s) 2699
Eco57I CTGAAG 6 cut(s) 123, 312, 716, 719, 1043, 2612
Eco88I CYCGRG 4 cut(s) 717, 968, 1866, 2382
EcoICRI GAGCTC 1 cut(s) 2699
EcoRI GAATTC 4 cut(s) 154, 1478, 1592, 1766
EcoRII CCWGG 3 cut(s) 973, 1285, 2614
EcoRV GATATC 1 cut(s) 1558
EcoT14I CCWWGG 2 cut(s) 2394, 2702
EcoT22I ATGCAT 1 cut(s) 497
EcoT38I GRGCYC 2 cut(s) 1309, 2701
ErhI CCWWGG 2 cut(s) 2394, 2702
FaeI CATG 4 cut(s) 337, 863, 1096, 2173
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FaqI GGGAC 2 cut(s) 801, 2241
FatI CATG 4 cut(s) 333, 859, 1092, 2169
FauI CCCGC 1 cut(s) 1384
FauNDI CATATG 1 cut(s) 2155
FblI GTMKAC 1 cut(s) 1719
Fnu4HI GCNGC 6 cut(s) 198, 279, 288, 408, 1698, 2136
FokI GGATG 4 cut(s) 419, 563, 589, 1675
FriOI GRGCYC 2 cut(s) 1309, 2701
Fsp4HI GCNGC 6 cut(s) 198, 279, 288, 408, 1698, 2136
FspBI CTAG 9 cut(s) 581, 683, 834, 1008, 1520, 1617, 2231, 2405, 2655
GlaI GCGC 1 cut(s) 1751
GluI GCNGC 6 cut(s) 198, 279, 288, 408, 1698, 2136
GsaI CCCAGC 3 cut(s) 576, 708, 1321
HaeII RGCGCY 1 cut(s) 1753
HaeIII GGCC 5 cut(s) 448, 1025, 1285, 1776, 2529
HapII CCGG 5 cut(s) 1038, 1545, 1683, 2383, 2720
HhaI GCGC 1 cut(s) 1752
Hin1II CATG 4 cut(s) 337, 863, 1096, 2173
Hin6I GCGC 1 cut(s) 1750
HinP1I GCGC 1 cut(s) 1750
HincII GTYRAC 3 cut(s) 21, 1414, 2454
HindII GTYRAC 3 cut(s) 21, 1414, 2454
HindIII AAGCTT 1 cut(s) 698
HpaII CCGG 5 cut(s) 1038, 1545, 1683, 2383, 2720
HphI GGTGA 9 cut(s) 118, 689, 1139, 1552, 1565, 1672, 1810, 1936, 2383
Hpy166II GTNNAC 8 cut(s) 21, 680, 1387, 1414, 1582, 1720, 2123, 2454
Hpy8I GTNNAC 8 cut(s) 21, 680, 1387, 1414, 1582, 1720, 2123, 2454
Hpy99I CGWCG 1 cut(s) 1478
HpyAV CCTTC 8 cut(s) 863, 1067, 1166, 1381, 1825, 2221, 2359, 2587
HpyCH4IV ACGT 5 cut(s) 609, 1389, 1488, 2125, 2511
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 284, 287, 992, 2660
HpyF3I CTNAG 9 cut(s) 483, 1020, 1222, 1295, 1335, 1599, 1647, 2318, 2769
HpySE526I ACGT 5 cut(s) 609, 1389, 1488, 2125, 2511
Hsp92II CATG 4 cut(s) 337, 863, 1096, 2173
HspAI GCGC 1 cut(s) 1750
Kzo9I GATC 5 cut(s) 265, 486, 1000, 1155, 1902
LguI GCTCTTC 2 cut(s) 993, 1121
LmnI GCTCC 5 cut(s) 98, 137, 1747, 2416, 2704
Lsp1109I GCAGC 5 cut(s) 209, 265, 274, 419, 2122
LweI GCATC 5 cut(s) 58, 567, 637, 681, 1531
MaeI CTAG 9 cut(s) 581, 683, 834, 1008, 1520, 1617, 2231, 2405, 2655
MaeII ACGT 5 cut(s) 609, 1389, 1488, 2125, 2511
MalI GATC 5 cut(s) 267, 488, 1002, 1157, 1904
MboI GATC 5 cut(s) 265, 486, 1000, 1155, 1902
MfeI CAATTG 2 cut(s) 1087, 2376
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 3 cut(s) 484, 1309, 2701
MlsI TGGCCA 1 cut(s) 448
MluNI TGGCCA 1 cut(s) 448
MlyI GAGTC 5 cut(s) 220, 797, 1622, 2329, 2363
MmeI TCCRAC 4 cut(s) 460, 503, 1173, 2121
Mox20I TGGCCA 1 cut(s) 448
Mph1103I ATGCAT 1 cut(s) 497
MroXI GAANNNNTTC 2 cut(s) 354, 2165
MscI TGGCCA 1 cut(s) 448
MseI TTAA 7 cut(s) 27, 147, 815, 1082, 1100, 1491, 1862
MslI CAYNNNNRTG 3 cut(s) 1031, 1982, 2604
Msp20I TGGCCA 1 cut(s) 448
MspA1I CMGCKG 2 cut(s) 200, 278
MspI CCGG 5 cut(s) 1038, 1545, 1683, 2383, 2720
MspR9I CCNGG 6 cut(s) 975, 1287, 1684, 2383, 2384, 2616
MunI CAATTG 2 cut(s) 1087, 2376
Mva1269I GAATGC 1 cut(s) 2753
MvaI CCWGG 3 cut(s) 975, 1287, 2616
MwoI GCNNNNNNNGC 5 cut(s) 61, 284, 287, 992, 2660
NciI CCSGG 3 cut(s) 1684, 2383, 2384
NdeI CATATG 1 cut(s) 2155
NdeII GATC 5 cut(s) 265, 486, 1000, 1155, 1902
NheI GCTAGC 1 cut(s) 580
NlaIII CATG 4 cut(s) 337, 863, 1096, 2173
NlaIV GGNNCC 5 cut(s) 215, 377, 1359, 1369, 2497
NmeAIII GCCGAG 1 cut(s) 785
NmuCI GTSAC 6 cut(s) 124, 754, 2197, 2246, 2433, 2752
NsiI ATGCAT 1 cut(s) 497
NspV TTCGAA 2 cut(s) 940, 2115
OliI CACNNNNGTG 1 cut(s) 2604
PaeR7I CTCGAG 1 cut(s) 1866
PagI TCATGA 2 cut(s) 859, 2169
PciSI GCTCTTC 2 cut(s) 993, 1121
PctI GAATGC 1 cut(s) 2753
PdmI GAANNNNTTC 2 cut(s) 354, 2165
PfeI GAWTC 8 cut(s) 882, 1011, 1218, 1291, 1786, 2024, 2093, 2686
PflMI CCANNNNNTGG 2 cut(s) 1214, 1317
PinAI ACCGGT 1 cut(s) 1037
PkrI GCNGC 6 cut(s) 199, 280, 289, 409, 1699, 2137
PleI GAGTC 5 cut(s) 220, 797, 1621, 2328, 2363
PpsI GAGTC 5 cut(s) 220, 797, 1621, 2328, 2363
PsiI TTATAA 1 cut(s) 1670
Psp124BI GAGCTC 1 cut(s) 2701
Psp1406I AACGTT 1 cut(s) 1389
Psp6I CCWGG 3 cut(s) 973, 1285, 2614
PspFI CCCAGC 3 cut(s) 572, 704, 1317
PspGI CCWGG 3 cut(s) 973, 1285, 2614
PspN4I GGNNCC 5 cut(s) 215, 377, 1359, 1369, 2497
PspPI GGNCC 3 cut(s) 1775, 2495, 2527
PspXI VCTCGAGB 1 cut(s) 1866
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 2 cut(s) 200, 278
RsaI GTAC 8 cut(s) 518, 874, 1048, 1139, 1184, 1273, 2180, 2347
RsaNI GTAC 8 cut(s) 517, 873, 1047, 1138, 1183, 1272, 2179, 2346
RseI CAYNNNNRTG 3 cut(s) 1031, 1982, 2604
SacI GAGCTC 1 cut(s) 2701
SapI GCTCTTC 2 cut(s) 993, 1121
SaqAI TTAA 7 cut(s) 27, 147, 815, 1082, 1100, 1491, 1862
SatI GCNGC 6 cut(s) 198, 279, 288, 408, 1698, 2136
Sau3AI GATC 5 cut(s) 265, 486, 1000, 1155, 1902
Sau96I GGNCC 3 cut(s) 1775, 2495, 2527
ScaI AGTACT 1 cut(s) 2180
SchI GAGTC 5 cut(s) 220, 797, 1622, 2329, 2363
ScrFI CCNGG 6 cut(s) 975, 1287, 1684, 2383, 2384, 2616
SduI GDGCHC 3 cut(s) 484, 1309, 2701
SfaNI GCATC 5 cut(s) 58, 567, 637, 681, 1531
SfcI CTRYAG 1 cut(s) 2215
Sfr274I CTCGAG 1 cut(s) 1866
SfuI TTCGAA 2 cut(s) 940, 2115
SinI GGWCC 1 cut(s) 2495
SlaI CTCGAG 1 cut(s) 1866
SmaI CCCGGG 1 cut(s) 2384
SmiMI CAYNNNNRTG 3 cut(s) 1031, 1982, 2604
SmlI CTYRAG 4 cut(s) 384, 849, 1866, 1912
SmoI CTYRAG 4 cut(s) 384, 849, 1866, 1912
SpeI ACTAGT 1 cut(s) 1519
SsiI CCGC 3 cut(s) 1377, 1697, 1923
SspI AATATT 2 cut(s) 1149, 2541
SspMI CTAG 9 cut(s) 581, 683, 834, 1008, 1520, 1617, 2231, 2405, 2655
SstI GAGCTC 1 cut(s) 2701
StyD4I CCNGG 6 cut(s) 973, 1285, 1682, 2381, 2382, 2614
StyI CCWWGG 2 cut(s) 2394, 2702
TaiI ACGT 5 cut(s) 612, 1392, 1491, 2128, 2514
TatI WGTACW 3 cut(s) 516, 1137, 2178
TauI GCSGC 1 cut(s) 1700
TfiI GAWTC 8 cut(s) 882, 1011, 1218, 1291, 1786, 2024, 2093, 2686
Tru1I TTAA 7 cut(s) 27, 147, 815, 1082, 1100, 1491, 1862
Tru9I TTAA 7 cut(s) 27, 147, 815, 1082, 1100, 1491, 1862
TscAI CASTG 5 cut(s) 91, 399, 759, 1083, 1777
TseFI GTSAC 6 cut(s) 124, 754, 2197, 2246, 2433, 2752
TseI GCWGC 5 cut(s) 197, 278, 287, 407, 2135
Tsp45I GTSAC 6 cut(s) 124, 754, 2197, 2246, 2433, 2752
TspDTI ATGAA 8 cut(s) 233, 390, 715, 1799, 2016, 2092, 2158, 2186
TspMI CCCGGG 1 cut(s) 2382
TspRI CASTG 5 cut(s) 91, 399, 759, 1083, 1777
Van91I CCANNNNNTGG 2 cut(s) 1214, 1317
VpaK11BI GGWCC 1 cut(s) 2495
XapI RAATTY 7 cut(s) 154, 205, 1478, 1592, 1766, 2518, 2666
XbaI TCTAGA 1 cut(s) 2404
XhoI CTCGAG 1 cut(s) 1866
XmaI CCCGGG 1 cut(s) 2382
XmiI GTMKAC 1 cut(s) 1719
XmnI GAANNNNTTC 2 cut(s) 354, 2165
XspI CTAG 9 cut(s) 581, 683, 834, 1008, 1520, 1617, 2231, 2405, 2655
ZrmI AGTACT 1 cut(s) 2180
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.