Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8083594.1

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 487

Gene Structure 487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8083594.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 463 bp

atgctagctcttttatttgagtcactccaagacgttggttcaaagattgagcatcatttggttctcccacgggtttcttctatgtctaatcctgattggggtgaactagaggagatgctgaagcttcccagctttcaatctcgggtcttcattgttcttcagtcatctttaccaacagtgactaatctgttcagggtggcgaagaagatgggacttgtaggaagagactcggcttggataatcacagagagtattaagagtttacttgaccctcaagtcaatcacgatatggaaggtactctgggaatcaagacctactataccaaaaataccagttcctatgtcaagttcagcaaggtatttcgaaaaaagtatccagagaaaaataactccgagccaggaatatatgctcttcgagcttacgatctaactagaatcgtaactcaggccataggaatgactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

154

Amino Acids

17.47

Weight (kDa)

9.3

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AcuI	CTGAAG	2 cut(s)	140, 143
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	42, 137
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	4 cut(s)	8, 124, 132, 419
AluI	AGCT	4 cut(s)	8, 124, 132, 419
Alw26I	GTCTC	1 cut(s)	219
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	113
AsuII	TTCGAA	1 cut(s)	364
AsuNHI	GCTAGC	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	139
BccI	CCATC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	399
BciVI	GTATCC	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	3 cut(s)	5, 107, 432
BfuI	GTATCC	1 cut(s)	384
Bme1390I	CCNGG	1 cut(s)	399
BmeT110I	CYCGRG	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	2 cut(s)	61, 105
BmtI	GCTAGC	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	139
Bpu14I	TTCGAA	1 cut(s)	364
BpuEI	CTTGAG	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	125
BseYI	CCCAGC	1 cut(s)	128
BshFI	GGCC	1 cut(s)	449
BsiHKCI	CYCGRG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	449
BsoBI	CYCGRG	1 cut(s)	141
Bsp119I	TTCGAA	1 cut(s)	364
Bsp143I	GATC	1 cut(s)	424
BspANI	GGCC	1 cut(s)	449
BspCNI	CTCAG	1 cut(s)	457
BspOI	GCTAGC	1 cut(s)	8
BspQI	GCTCTTC	1 cut(s)	417
BspT104I	TTCGAA	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	1 cut(s)	424
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	2 cut(s)	217, 417
BstBI	TTCGAA	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	444
BstDSI	CCRYGG	1 cut(s)	68
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	139
BstXI	CCANNNNNNTGG	1 cut(s)	35
BsuI	GTATCC	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	449
BtgI	CCRYGG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	297
CviJI	RGCY	7 cut(s)	8, 124, 132, 233, 397, 419, 449
CviKI_1	RGCY	7 cut(s)	8, 124, 132, 233, 397, 419, 449
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
Eam1104I	CTCTTC	2 cut(s)	217, 417
EarI	CTCTTC	2 cut(s)	217, 417
Eco57I	CTGAAG	2 cut(s)	140, 143
Eco88I	CYCGRG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	397
FaiI	YATR	7 cut(s)	83, 290, 321, 342, 406, 408, 452
FaqI	GGGAC	1 cut(s)	225
FspBI	CTAG	3 cut(s)	5, 107, 432
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	4 cut(s)	20, 227, 306, 435
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	104, 263
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	4 cut(s)	92, 284, 310, 377
Hpy8I	GTNNAC	2 cut(s)	104, 263
HpyAV	CCTTC	1 cut(s)	287
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	424
LguI	GCTCTTC	1 cut(s)	417
LpnPI	CCDG	9 cut(s)	105, 142, 178, 287, 346, 384, 390, 411, 431
LweI	GCATC	2 cut(s)	61, 105
MaeI	CTAG	3 cut(s)	5, 107, 432
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	3 cut(s)	21, 178, 439
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	7 cut(s)	69, 139, 149, 214, 217, 234, 404
MlyI	GAGTC	2 cut(s)	29, 221
MnlI	CCTC	2 cut(s)	103, 282
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	1 cut(s)	424
NheI	GCTAGC	1 cut(s)	4
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	2 cut(s)	21, 178
NspV	TTCGAA	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	306, 435
PleI	GAGTC	2 cut(s)	28, 221
PpsI	GAGTC	2 cut(s)	28, 221
Psp6I	CCWGG	1 cut(s)	397
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	397
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	455
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	424
SchI	GAGTC	2 cut(s)	29, 221
ScrFI	CCNGG	1 cut(s)	399
SetI	ASST	8 cut(s)	10, 36, 126, 134, 298, 317, 360, 421
SfaNI	GCATC	2 cut(s)	61, 105
SfuI	TTCGAA	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
SspMI	CTAG	3 cut(s)	5, 107, 432
StyD4I	CCNGG	1 cut(s)	397
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	364, 415
TfiI	GAWTC	2 cut(s)	306, 435
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	2 cut(s)	21, 178
Tsp45I	GTSAC	2 cut(s)	21, 178
TspDTI	ATGAA	1 cut(s)	139
TspRI	CASTG	1 cut(s)	183
XspI	CTAG	3 cut(s)	5, 107, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.