Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8206032.1

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 615

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8206032.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atatttcagaaggactctccaattgcccgggatttcaccaaggtcattctagagttattggagcagggaaaaatgatgtcacttgaagatgcttggttgacaccgaaaagtgagtgtcgaaacaatgcaacttccaatggacccgaaagtttgaacgtcaagaattttatgggcctttatgtaatatttggtgttacttccaccatttgccttctattatcctgcgctatcttgctgaagaaacacgaagatgcatacccaggcaatgcaagtggcgaaagtgtttggaataggatagttagaatagcaaaattcctatataatagacagattccaagtagagctacaagttttgctgatgtgccggaattgagtacttcttccgagctggaatgcgtgaccacttctgccacttgggagcatcatcctcacacctccattccagcacaaactgaaggcactccaccacatgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

158

Amino Acids

17.56

Weight (kDa)

5.74

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	163, 311
AcuI	CTGAAG	2 cut(s)	257, 474
AfaI	GTAC	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	86, 154
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	2 cut(s)	344, 388
AluI	AGCT	2 cut(s)	344, 388
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	1 cut(s)	172
ApoI	RAATTY	2 cut(s)	163, 311
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	140, 172
AsuC2I	CCSGG	2 cut(s)	28, 29
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	261
BcnI	CCSGG	2 cut(s)	28, 29
BfaI	CTAG	1 cut(s)	50
BmcAI	AGTACT	1 cut(s)	376
Bme1390I	CCNGG	3 cut(s)	28, 29, 261
Bme18I	GGWCC	1 cut(s)	140
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	140, 172
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	3 cut(s)	28, 29, 261
BmsI	GCATC	3 cut(s)	79, 241, 430
BpuMI	CCSGG	2 cut(s)	28, 29
BsaJI	CCNNGG	3 cut(s)	27, 39, 259
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	3 cut(s)	27, 39, 259
BseGI	GGATG	1 cut(s)	424
BseMI	GCAATG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	28, 365
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	27
BspANI	GGCC	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	271
BssECI	CCNNGG	3 cut(s)	27, 39, 259
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	3 cut(s)	26, 27, 259
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	424
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	2 cut(s)	140, 172
Cfr9I	CCCGGG	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	375
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	1 cut(s)	470
CviJI	RGCY	3 cut(s)	174, 344, 388
CviKI_1	RGCY	3 cut(s)	174, 344, 388
CviQI	GTAC	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	140
Eco57I	CTGAAG	2 cut(s)	257, 474
Eco88I	CYCGRG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	39
EcoT22I	ATGCAT	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	473
FaiI	YATR	6 cut(s)	170, 180, 256, 319, 321, 471
FatI	CATG	1 cut(s)	469
FokI	GGATG	1 cut(s)	411
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	2 cut(s)	28, 365
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	473
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	2 cut(s)	14, 331
HpaII	CCGG	2 cut(s)	28, 365
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	2 cut(s)	9, 385
Hpy188III	TCNNGA	2 cut(s)	50, 160
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	3 cut(s)	4, 221, 449
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	3 cut(s)	128, 254, 269
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	473
HspAI	GCGC	1 cut(s)	225
LmnI	GCTCC	2 cut(s)	61, 418
LpnPI	CCDG	8 cut(s)	41, 50, 235, 246, 273, 374, 378, 456
LweI	GCATC	3 cut(s)	79, 241, 430
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	3 cut(s)	78, 193, 397
MboII	GAAGA	4 cut(s)	98, 250, 260, 372
MfeI	CAATTG	1 cut(s)	21
MluCI	AATT	4 cut(s)	21, 163, 311, 368
MlyI	GAGTC	1 cut(s)	8
MnlI	CCTC	2 cut(s)	438, 445
Mph1103I	ATGCAT	1 cut(s)	256
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	2 cut(s)	28, 365
MspR9I	CCNGG	3 cut(s)	28, 29, 261
MunI	CAATTG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	261
NciI	CCSGG	2 cut(s)	28, 29
NlaIII	CATG	1 cut(s)	473
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	78, 397
NsiI	ATGCAT	1 cut(s)	256
PctI	GAATGC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	2 cut(s)	140, 172
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
RseI	CAYNNNNRTG	1 cut(s)	249
Sau96I	GGNCC	2 cut(s)	140, 172
ScaI	AGTACT	1 cut(s)	376
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	3 cut(s)	28, 29, 261
SetI	ASST	5 cut(s)	45, 159, 346, 390, 437
SfaNI	GCATC	3 cut(s)	79, 241, 430
SinI	GGWCC	1 cut(s)	140
SmaI	CCCGGG	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	249
Sse9I	AATT	4 cut(s)	21, 163, 311, 368
SspI	AATATT	1 cut(s)	186
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	3 cut(s)	26, 27, 259
StyI	CCWWGG	1 cut(s)	39
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	118
TasI	AATT	4 cut(s)	21, 163, 311, 368
TatI	WGTACW	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	331
TseFI	GTSAC	2 cut(s)	78, 397
Tsp45I	GTSAC	2 cut(s)	78, 397
TspMI	CCCGGG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	140
XapI	RAATTY	2 cut(s)	163, 311
XbaI	TCTAGA	1 cut(s)	49
XmaI	CCCGGG	1 cut(s)	27
XspI	CTAG	1 cut(s)	50
ZrmI	AGTACT	1 cut(s)	376
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.