Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Reverse (-)

48013562 .. 48014654

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG195700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTCTTATTCTACAGCTAAAACAGTCCAAAGACTTGCGATCTTGTTTCCTCTGCTCATCATCTACTTGCTATTCATTCTCTCCTACGCAGTTGAAGCTGAAGATGAGAAAAAAATCACTAACATTGGAGCAATCATTGATGTTAATTCCCGTATCGGGAAAGAACAGAAAGCTGCTATGGAAATTGCAGCTGAAAACTTCAACAACCAGTCAGACACTCATGAGCTAATCCTTCATTTTCGAGATTCTGGCCGCGACCCTTTTCTTGCTGCTTATGCTGCTAAACATTTGATAAGGGAACAAAAGGTACAAGTGGTAATTGGCATGGAAACTTGGCAGGAAGCAGTTACAGTAGCTGATGTGGTCAAAAACCTATCTGATCAAATTCCGGTCATTTCCTTTGCAGCACCCACCATATCCCCGCCACTATTACAACGGCGTTGGCCTTCCTTGATACGAATGGCTACCGATGGTGCTGCTCAGATGAAATGCATTGGAGATATAGTTAATGCTTACAACTGGAAAAGGGTTGTTGTAATATATGAAGATGATGGGTATGGTGGTGGTGTGGGGAGGCTAGCTCTTTTATCTGAGACTCTAAGAAATGTTGGTTCTACAATTGAGCTTCGTATAGTTCTCCCACGACTTTCTGAGCCTGATACAAATTGGGATGAAATAAATAAGCAGCTGTTGGAGCTTTCCAATGTAAACTCTCGGGCATTTATAGTTCTTCAGTCATCTTTACCAACAGTAACTGGTCTATTCAAAGTGGCTAGGAAGATGGGATTTGTAGGAAATGATTCAGCTTGGATAATCACAGAGAGTATTGCTAGTTTGCTTGACCCTCATGGCAACTACGATATGGAAGGAACTCTAGGAATCAAGACCTACTACGCCAATGAGTCTAGTTCTTATGCTGAATTCCAGAAGGAATTCCAAGCTAAGTATGCAGAAGAAAATAACTCCAAGCCAGGAATTTATGAGACAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

330

Amino Acids

36.83

Weight (kDa)

5.31

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	51 - 319	1.8e-15	Periplasmic binding protein
ANF_receptor	PF01094	57 - 316	4.4e-34	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	255
AciI	CCGC	2 cut(s)	253, 422
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	4 cut(s)	384, 920, 932, 975
AcuI	CTGAAG	2 cut(s)	120, 716
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	3 cut(s)	95, 202, 766
AjnI	CCWGG	1 cut(s)	970
Alw26I	GTCTC	2 cut(s)	587, 977
AlwNI	CAGNNNCTG	2 cut(s)	356, 755
Ama87I	CYCGRG	1 cut(s)	714
AoxI	GGCC	2 cut(s)	250, 443
ApeKI	GCWGC	7 cut(s)	173, 188, 269, 278, 404, 476, 685
ApoI	RAATTY	4 cut(s)	384, 920, 932, 975
Asp700I	GAANNNNTTC	2 cut(s)	799, 932
AsuNHI	GCTAGC	1 cut(s)	577
AvaI	CYCGRG	1 cut(s)	714
BbvI	GCAGC	7 cut(s)	160, 200, 256, 265, 416, 463, 697
BccI	CCATC	3 cut(s)	464, 545, 775
BceAI	ACGGC	1 cut(s)	452
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	1 cut(s)	972
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	587, 977
BfaI	CTAG	5 cut(s)	578, 774, 831, 875, 906
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	8 cut(s)	174, 189, 253, 270, 279, 405, 477, 686
BlsI	GCNGC	8 cut(s)	175, 190, 254, 271, 280, 406, 478, 687
Bme1390I	CCNGG	1 cut(s)	972
BmeT110I	CYCGRG	1 cut(s)	714
BmrFI	CCNGG	1 cut(s)	972
BmtI	GCTAGC	1 cut(s)	581
BplI	GAGNNNNNCTC	2 cut(s)	565, 597
BsaWI	WCCGGW	1 cut(s)	388
BsaXI	ACNNNNNCTCC	2 cut(s)	489, 519
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	3 cut(s)	208, 524, 760
BseBI	CCWGG	1 cut(s)	972
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	3 cut(s)	494, 582, 642
BseNI	ACTGG	3 cut(s)	208, 524, 760
BseXI	GCAGC	7 cut(s)	160, 200, 256, 265, 416, 463, 697
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	252, 445
BsiHKCI	CYCGRG	1 cut(s)	714
BsiSI	CCGG	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	2 cut(s)	587, 977
BsnI	GGCC	2 cut(s)	252, 445
BsoBI	CYCGRG	1 cut(s)	714
Bsp143I	GATC	2 cut(s)	39, 379
BspACI	CCGC	2 cut(s)	253, 422
BspANI	GGCC	2 cut(s)	252, 445
BspCNI	CTCAG	3 cut(s)	493, 583, 643
BspFNI	CGCG	1 cut(s)	255
BspHI	TCATGA	1 cut(s)	220
BspOI	GCTAGC	1 cut(s)	581
BsrI	ACTGG	3 cut(s)	208, 524, 760
BssMI	GATC	2 cut(s)	39, 379
Bst2UI	CCWGG	1 cut(s)	972
Bst4CI	ACNGT	3 cut(s)	25, 352, 751
BstC8I	GCNNGC	1 cut(s)	579
BstDEI	CTNAG	5 cut(s)	480, 591, 599, 651, 942
BstF5I	GGATG	1 cut(s)	676
BstFNI	CGCG	1 cut(s)	255
BstKTI	GATC	2 cut(s)	42, 382
BstMAI	GTCTC	2 cut(s)	587, 977
BstMBI	GATC	2 cut(s)	39, 379
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 275, 278, 694, 947
BstNI	CCWGG	1 cut(s)	972
BstSCI	CCNGG	1 cut(s)	970
BstSFI	CTRYAG	1 cut(s)	12
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	7 cut(s)	160, 200, 256, 265, 416, 463, 697
BsuRI	GGCC	2 cut(s)	252, 445
BtsCI	GGATG	1 cut(s)	676
Cac8I	GCNNGC	1 cut(s)	579
CaiI	CAGNNNCTG	2 cut(s)	356, 755
CciI	TCATGA	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	3 cut(s)	221, 325, 848
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	5 cut(s)	480, 591, 599, 651, 942
DpnI	GATC	2 cut(s)	41, 381
DpnII	GATC	2 cut(s)	39, 379
EaeI	YGGCCR	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	120, 716
Eco88I	CYCGRG	1 cut(s)	714
EcoRI	GAATTC	2 cut(s)	920, 932
EcoRII	CCWGG	1 cut(s)	970
EcoT22I	ATGCAT	1 cut(s)	494
FaeI	CATG	3 cut(s)	224, 328, 851
FatI	CATG	3 cut(s)	220, 324, 847
FauI	CCCGC	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	8 cut(s)	174, 189, 253, 270, 279, 405, 477, 686
FokI	GGATG	1 cut(s)	683
Fsp4HI	GCNGC	8 cut(s)	174, 189, 253, 270, 279, 405, 477, 686
FspBI	CTAG	5 cut(s)	578, 774, 831, 875, 906
GluI	GCNGC	8 cut(s)	174, 189, 253, 270, 279, 405, 477, 686
HaeIII	GGCC	2 cut(s)	252, 445
HapII	CCGG	1 cut(s)	389
Hin1II	CATG	3 cut(s)	224, 328, 851
HinfI	GANTC	5 cut(s)	245, 595, 800, 879, 902
HpaII	CCGG	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	5 cut(s)	214, 379, 483, 592, 652
Hpy188III	TCNNGA	5 cut(s)	157, 221, 242, 883, 925
Hpy8I	GTNNAC	1 cut(s)	709
HpyAV	CCTTC	4 cut(s)	242, 456, 860, 922
HpyCH4III	ACNGT	3 cut(s)	25, 352, 751
HpyCH4V	TGCA	4 cut(s)	188, 404, 492, 950
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 275, 278, 694, 947
HpyF3I	CTNAG	5 cut(s)	480, 591, 599, 651, 942
Hsp92II	CATG	3 cut(s)	224, 328, 851
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	39, 379
LmnI	GCTCC	2 cut(s)	128, 694
Lsp1109I	GCAGC	7 cut(s)	160, 200, 256, 265, 416, 463, 697
MaeI	CTAG	5 cut(s)	578, 774, 831, 875, 906
MaeIII	GTNAC	2 cut(s)	346, 751
MalI	GATC	2 cut(s)	41, 381
MboI	GATC	2 cut(s)	39, 379
MboII	GAAGA	5 cut(s)	113, 557, 722, 790, 965
MfeI	CAATTG	1 cut(s)	618
MluCI	AATT	9 cut(s)	145, 183, 318, 384, 618, 664, 920, 932, 975
MlyI	GAGTC	2 cut(s)	589, 911
MmeI	TCCRAC	1 cut(s)	672
MnlI	CCTC	3 cut(s)	60, 567, 855
Mph1103I	ATGCAT	1 cut(s)	494
MroXI	GAANNNNTTC	2 cut(s)	799, 932
MseI	TTAA	2 cut(s)	144, 507
MspA1I	CMGCKG	2 cut(s)	191, 688
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	972
MunI	CAATTG	1 cut(s)	618
MvaI	CCWGG	1 cut(s)	972
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	5 cut(s)	95, 275, 278, 694, 947
NdeII	GATC	2 cut(s)	39, 379
NheI	GCTAGC	1 cut(s)	577
NlaIII	CATG	3 cut(s)	224, 328, 851
NsiI	ATGCAT	1 cut(s)	494
PagI	TCATGA	1 cut(s)	220
PdmI	GAANNNNTTC	2 cut(s)	799, 932
PfeI	GAWTC	3 cut(s)	245, 800, 879
PkrI	GCNGC	8 cut(s)	175, 190, 254, 271, 280, 406, 478, 687
PleI	GAGTC	2 cut(s)	589, 910
PpsI	GAGTC	2 cut(s)	589, 910
Psp6I	CCWGG	1 cut(s)	970
PspGI	CCWGG	1 cut(s)	970
PsrI	GAACNNNNNNTAC	2 cut(s)	291, 323
PstNI	CAGNNNCTG	2 cut(s)	356, 755
PvuII	CAGCTG	2 cut(s)	191, 688
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	144, 507
SatI	GCNGC	8 cut(s)	174, 189, 253, 270, 279, 405, 477, 686
Sau3AI	GATC	2 cut(s)	39, 379
SchI	GAGTC	2 cut(s)	589, 911
ScrFI	CCNGG	1 cut(s)	972
SfcI	CTRYAG	1 cut(s)	12
Sse9I	AATT	9 cut(s)	145, 183, 318, 384, 618, 664, 920, 932, 975
SsiI	CCGC	2 cut(s)	253, 422
SspMI	CTAG	5 cut(s)	578, 774, 831, 875, 906
StyD4I	CCNGG	1 cut(s)	970
TaaI	ACNGT	3 cut(s)	25, 352, 751
TaqI	TCGA	1 cut(s)	241
TasI	AATT	9 cut(s)	145, 183, 318, 384, 618, 664, 920, 932, 975
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	3 cut(s)	245, 800, 879
Tru1I	TTAA	2 cut(s)	144, 507
Tru9I	TTAA	2 cut(s)	144, 507
TseI	GCWGC	7 cut(s)	173, 188, 269, 278, 404, 476, 685
TspDTI	ATGAA	5 cut(s)	64, 224, 500, 558, 687
XapI	RAATTY	4 cut(s)	384, 920, 932, 975
XmnI	GAANNNNTTC	2 cut(s)	799, 932
XspI	CTAG	5 cut(s)	578, 774, 831, 875, 906
Zsp2I	ATGCAT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.