Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Peripla_BP_6 | PF13458 | 304 - 609 | 8.8e-13 | Periplasmic binding protein |
| ANF_receptor | PF01094 | 308 - 633 | 6.3e-35 | Receptor family ligand binding region |
| Ribonuc_red_lgC | PF02867 | 723 - 773 | 2.8e-10 | Ribonucleotide reductase, barrel domain |
| Ribonuc_red_lgC | PF02867 | 774 - 1014 | 1.3e-59 | Ribonucleotide reductase, barrel domain |
| Ribonuc_red_lgC | PF02867 | 1028 - 1129 | 7.6e-28 | Ribonucleotide reductase, barrel domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1613, 3473 |
| AatII | GACGTC | 1 cut(s) | 2831 |
| AccB1I | GGYRCC | 2 cut(s) | 1171, 2359 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1976 |
| AccBSI | CCGCTC | 1 cut(s) | 3159 |
| AccI | GTMKAC | 2 cut(s) | 2576, 3546 |
| AciI | CCGC | 4 cut(s) | 671, 1169, 1204, 3159 |
| AclI | AACGTT | 1 cut(s) | 460 |
| AclWI | GGATC | 5 cut(s) | 3329, 3397, 3581, 3585, 3608 |
| AcoI | YGGCCR | 1 cut(s) | 1208 |
| AcsI | RAATTY | 7 cut(s) | 1149, 1740, 2094, 2141, 2456, 3041, 3164 |
| AcuI | CTGAAG | 3 cut(s) | 123, 615, 1481 |
| AcyI | GRCGYC | 1 cut(s) | 2828 |
| AdeI | CACNNNGTG | 1 cut(s) | 2107 |
| AfaI | GTAC | 5 cut(s) | 497, 1712, 1810, 1837, 1901 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 1914, 1976, 2194, 3412, 3413, 3515, 3656 |
| AflIII | ACRYGT | 3 cut(s) | 238, 316, 427 |
| AgeI | ACCGGT | 1 cut(s) | 3653 |
| AhlI | ACTAGT | 2 cut(s) | 1595, 1670 |
| AjiI | CACGTC | 2 cut(s) | 239, 428 |
| AjnI | CCWGG | 7 cut(s) | 355, 702, 1730, 1735, 2428, 2615, 3018 |
| Alw21I | GWGCWC | 2 cut(s) | 1147, 2335 |
| AlwI | GGATC | 5 cut(s) | 3329, 3397, 3581, 3585, 3608 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 134, 161 |
| Ama87I | CYCGRG | 1 cut(s) | 1479 |
| AoxI | GGCC | 5 cut(s) | 1208, 1733, 1785, 2846, 3001 |
| ApoI | RAATTY | 7 cut(s) | 1149, 1740, 2094, 2141, 2456, 3041, 3164 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 692, 724 |
| AsiGI | ACCGGT | 1 cut(s) | 3653 |
| AspS9I | GGNCC | 2 cut(s) | 3002, 3647 |
| AsuC2I | CCSGG | 1 cut(s) | 3407 |
| AsuHPI | GGTGA | 7 cut(s) | 1312, 1340, 1901, 2462, 2904, 3173, 3187 |
| AsuII | TTCGAA | 1 cut(s) | 3456 |
| AvaI | CYCGRG | 1 cut(s) | 1479 |
| AvaII | GGWCC | 1 cut(s) | 3647 |
| AxyI | CCTNAGG | 1 cut(s) | 2916 |
| BaeGI | GKGCMC | 1 cut(s) | 2073 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1211, 1244 |
| BalI | TGGCCA | 1 cut(s) | 1210 |
| BanI | GGYRCC | 2 cut(s) | 1171, 2359 |
| BanII | GRGCYC | 4 cut(s) | 1147, 1655, 2335, 3663 |
| BauI | CACGAG | 1 cut(s) | 2334 |
| Bbv12I | GWGCWC | 2 cut(s) | 1147, 2335 |
| BceAI | ACGGC | 2 cut(s) | 3532, 3648 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1223, 1257 |
| BciT130I | CCWGG | 7 cut(s) | 357, 704, 1732, 1737, 2430, 2617, 3020 |
| BciVI | GTATCC | 1 cut(s) | 2509 |
| BclI | TGATCA | 1 cut(s) | 1762 |
| BcnI | CCSGG | 1 cut(s) | 3407 |
| BcuI | ACTAGT | 2 cut(s) | 1595, 1670 |
| BfaI | CTAG | 9 cut(s) | 998, 1121, 1343, 1445, 1596, 1671, 1770, 2747, 3087 |
| BfmI | CTRYAG | 2 cut(s) | 1053, 3139 |
| BfuI | GTATCC | 1 cut(s) | 2509 |
| BmcAI | AGTACT | 1 cut(s) | 1810 |
| Bme1390I | CCNGG | 8 cut(s) | 357, 704, 1732, 1737, 2430, 2617, 3020, 3407 |
| Bme18I | GGWCC | 1 cut(s) | 3647 |
| BmeT110I | CYCGRG | 1 cut(s) | 1479 |
| BmgBI | CACGTC | 2 cut(s) | 239, 428 |
| BmgT120I | GGNCC | 2 cut(s) | 3002, 3647 |
| BmiI | GGNNCC | 5 cut(s) | 1173, 1654, 2361, 2554, 2716 |
| BmrFI | CCNGG | 8 cut(s) | 357, 704, 1732, 1737, 2430, 2617, 3020, 3407 |
| BmsI | GCATC | 7 cut(s) | 161, 783, 814, 1399, 2310, 2629, 2999 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3542 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3242, 3274 |
| BpmI | CTGGAG | 3 cut(s) | 1714, 2412, 3630 |
| Bpu14I | TTCGAA | 1 cut(s) | 3456 |
| BpuEI | CTTGAG | 5 cut(s) | 305, 416, 527, 761, 1596 |
| BpuMI | CCSGG | 1 cut(s) | 3407 |
| Bsa29I | ATCGAT | 1 cut(s) | 36 |
| BsaAI | YACGTR | 1 cut(s) | 317 |
| BsaHI | GRCGYC | 1 cut(s) | 2828 |
| BsaI | GGTCTC | 5 cut(s) | 1005, 1960, 2942, 3225, 3530 |
| BsaJI | CCNNGG | 5 cut(s) | 841, 933, 3019, 3097, 3639 |
| BsaWI | WCCGGW | 2 cut(s) | 3539, 3653 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 351, 381, 1878, 1908 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 1914, 1976, 2194, 3412, 3413, 3515, 3656 |
| Bse118I | RCCGGY | 1 cut(s) | 3653 |
| Bse1I | ACTGG | 4 cut(s) | 1154, 2043, 2266, 3029 |
| Bse21I | CCTNAGG | 1 cut(s) | 2916 |
| Bse3DI | GCAATG | 2 cut(s) | 32, 1257 |
| BseBI | CCWGG | 7 cut(s) | 357, 704, 1732, 1737, 2430, 2617, 3020 |
| BseCI | ATCGAT | 1 cut(s) | 36 |
| BseDI | CCNNGG | 5 cut(s) | 841, 933, 3019, 3097, 3639 |
| BseGI | GGATG | 6 cut(s) | 79, 774, 2291, 2686, 3259, 3368 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 1914, 1976, 2194, 3412, 3413, 3515, 3656 |
| BseMI | GCAATG | 2 cut(s) | 32, 1257 |
| BseNI | ACTGG | 4 cut(s) | 1154, 2043, 2266, 3029 |
| BseRI | GAGGAG | 1 cut(s) | 618 |
| BseSI | GKGCMC | 1 cut(s) | 2073 |
| BseYI | CCCAGC | 2 cut(s) | 2222, 2445 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3654 |
| BshFI | GGCC | 5 cut(s) | 1210, 1735, 1787, 2848, 3003 |
| BshNI | GGYRCC | 2 cut(s) | 1171, 2359 |
| BshTI | ACCGGT | 1 cut(s) | 3653 |
| BshVI | ATCGAT | 1 cut(s) | 36 |
| BsiEI | CGRYCG | 1 cut(s) | 3654 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1147, 2335 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1479 |
| BsiSI | CCGG | 3 cut(s) | 3407, 3540, 3654 |
| BslFI | GGGAC | 4 cut(s) | 776, 1351, 1563, 2302 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 1914, 1976, 2194, 3412, 3413, 3515, 3656 |
| BsmBI | CGTCTC | 1 cut(s) | 3459 |
| BsmFI | GGGAC | 4 cut(s) | 776, 1351, 1563, 2302 |
| BsmI | GAATGC | 3 cut(s) | 673, 1697, 3452 |
| BsnI | GGCC | 5 cut(s) | 1210, 1735, 1787, 2848, 3003 |
| Bso31I | GGTCTC | 5 cut(s) | 1005, 1960, 2942, 3225, 3530 |
| BsoBI | CYCGRG | 1 cut(s) | 1479 |
| Bsp119I | TTCGAA | 1 cut(s) | 3456 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1147, 1655, 2073, 2335, 3663 |
| Bsp1407I | TGTACA | 1 cut(s) | 495 |
| Bsp19I | CCATGG | 3 cut(s) | 841, 933, 3639 |
| BspACI | CCGC | 4 cut(s) | 671, 1169, 1204, 3159 |
| BspANI | GGCC | 5 cut(s) | 1210, 1735, 1787, 2848, 3003 |
| BspDI | ATCGAT | 1 cut(s) | 36 |
| BspHI | TCATGA | 4 cut(s) | 660, 1621, 2373, 3193 |
| BspLI | GGNNCC | 5 cut(s) | 1173, 1654, 2361, 2554, 2716 |
| BspMAI | CTGCAG | 1 cut(s) | 1057 |
| BspPI | GGATC | 5 cut(s) | 3329, 3397, 3581, 3585, 3608 |
| BspQI | GCTCTTC | 4 cut(s) | 11, 1368, 1443, 1755 |
| BspT104I | TTCGAA | 1 cut(s) | 3456 |
| BspT107I | GGYRCC | 2 cut(s) | 1171, 2359 |
| BspTNI | GGTCTC | 5 cut(s) | 1005, 1960, 2942, 3225, 3530 |
| BsrBI | CCGCTC | 1 cut(s) | 3159 |
| BsrDI | GCAATG | 2 cut(s) | 32, 1257 |
| BsrFI | RCCGGY | 1 cut(s) | 3653 |
| BsrGI | TGTACA | 1 cut(s) | 495 |
| BsrI | ACTGG | 4 cut(s) | 1154, 2043, 2266, 3029 |
| BssAI | RCCGGY | 1 cut(s) | 3653 |
| BssECI | CCNNGG | 5 cut(s) | 841, 933, 3019, 3097, 3639 |
| BssNAI | GTATAC | 1 cut(s) | 2577 |
| BssNI | GRCGYC | 1 cut(s) | 2828 |
| BssSI | CACGAG | 1 cut(s) | 2334 |
| BssT1I | CCWWGG | 4 cut(s) | 841, 933, 3097, 3639 |
| Bst1107I | GTATAC | 1 cut(s) | 2577 |
| Bst2BI | CACGAG | 1 cut(s) | 2334 |
| Bst2UI | CCWGG | 7 cut(s) | 357, 704, 1732, 1737, 2430, 2617, 3020 |
| Bst6I | CTCTTC | 7 cut(s) | 11, 1368, 1443, 1555, 1755, 2316, 3432 |
| BstACI | GRCGYC | 1 cut(s) | 2828 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2626 |
| BstAUI | TGTACA | 1 cut(s) | 495 |
| BstBAI | YACGTR | 1 cut(s) | 317 |
| BstBI | TTCGAA | 1 cut(s) | 3456 |
| BstC8I | GCNNGC | 4 cut(s) | 23, 48, 1208, 2700 |
| BstDSI | CCRYGG | 3 cut(s) | 841, 933, 3639 |
| BstF5I | GGATG | 6 cut(s) | 79, 774, 2291, 2686, 3259, 3368 |
| BstMCI | CGRYCG | 1 cut(s) | 3654 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1124, 1459, 1754, 2626, 3641 |
| BstNI | CCWGG | 7 cut(s) | 357, 704, 1732, 1737, 2430, 2617, 3020 |
| BstNSI | RCATGY | 2 cut(s) | 2506, 2902 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3542 |
| BstSCI | CCNGG | 8 cut(s) | 355, 702, 1730, 1735, 2428, 2615, 3018, 3405 |
| BstSFI | CTRYAG | 2 cut(s) | 1053, 3139 |
| BstSLI | GKGCMC | 1 cut(s) | 2073 |
| BstX2I | RGATCY | 4 cut(s) | 3402, 3577, 3586, 3613 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 801 |
| BstYI | RGATCY | 4 cut(s) | 3402, 3577, 3586, 3613 |
| BstZ17I | GTATAC | 1 cut(s) | 2577 |
| Bsu15I | ATCGAT | 1 cut(s) | 36 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2916 |
| BsuI | GTATCC | 1 cut(s) | 2509 |
| BsuRI | GGCC | 5 cut(s) | 1210, 1735, 1787, 2848, 3003 |
| BsuTUI | ATCGAT | 1 cut(s) | 36 |
| BtgI | CCRYGG | 3 cut(s) | 841, 933, 3639 |
| BtgZI | GCGATG | 2 cut(s) | 1248, 3425 |
| BtrI | CACGTC | 2 cut(s) | 239, 428 |
| BtsCI | GGATG | 6 cut(s) | 79, 774, 2291, 2686, 3259, 3368 |
| BtsI | GCAGTG | 2 cut(s) | 2757, 3045 |
| BtsIMutI | CAGTG | 9 cut(s) | 135, 691, 1161, 1845, 2259, 2757, 2769, 3045, 3529 |
| Cac8I | GCNNGC | 4 cut(s) | 23, 48, 1208, 2700 |
| CaiI | CAGNNNCTG | 2 cut(s) | 134, 161 |
| CciI | TCATGA | 4 cut(s) | 660, 1621, 2373, 3193 |
| Cfr10I | RCCGGY | 1 cut(s) | 3653 |
| Cfr13I | GGNCC | 2 cut(s) | 3002, 3647 |
| ClaI | ATCGAT | 1 cut(s) | 36 |
| CseI | GACGC | 1 cut(s) | 588 |
| Csp6I | GTAC | 5 cut(s) | 496, 1711, 1809, 1836, 1900 |
| CspAI | ACCGGT | 1 cut(s) | 3653 |
| CviQI | GTAC | 5 cut(s) | 496, 1711, 1809, 1836, 1900 |
| DraIII | CACNNNGTG | 1 cut(s) | 2107 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1613, 3473 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1613, 3473 |
| EaeI | YGGCCR | 1 cut(s) | 1208 |
| Eam1104I | CTCTTC | 7 cut(s) | 11, 1368, 1443, 1555, 1755, 2316, 3432 |
| EarI | CTCTTC | 7 cut(s) | 11, 1368, 1443, 1555, 1755, 2316, 3432 |
| Ecl136II | GAGCTC | 2 cut(s) | 1145, 2333 |
| Eco130I | CCWWGG | 4 cut(s) | 841, 933, 3097, 3639 |
| Eco24I | GRGCYC | 4 cut(s) | 1147, 1655, 2335, 3663 |
| Eco31I | GGTCTC | 5 cut(s) | 1005, 1960, 2942, 3225, 3530 |
| Eco47I | GGWCC | 1 cut(s) | 3647 |
| Eco53kI | GAGCTC | 2 cut(s) | 1145, 2333 |
| Eco57I | CTGAAG | 3 cut(s) | 123, 615, 1481 |
| Eco81I | CCTNAGG | 1 cut(s) | 2916 |
| Eco88I | CYCGRG | 1 cut(s) | 1479 |
| EcoICRI | GAGCTC | 2 cut(s) | 1145, 2333 |
| EcoRII | CCWGG | 7 cut(s) | 355, 702, 1730, 1735, 2428, 2615, 3018 |
| EcoT14I | CCWWGG | 4 cut(s) | 841, 933, 3097, 3639 |
| EcoT22I | ATGCAT | 1 cut(s) | 1259 |
| EcoT38I | GRGCYC | 4 cut(s) | 1147, 1655, 2335, 3663 |
| ErhI | CCWWGG | 4 cut(s) | 841, 933, 3097, 3639 |
| Esp3I | CGTCTC | 1 cut(s) | 3459 |
| FaqI | GGGAC | 4 cut(s) | 776, 1351, 1563, 2302 |
| FauNDI | CATATG | 1 cut(s) | 1759 |
| FbaI | TGATCA | 1 cut(s) | 1762 |
| FblI | GTMKAC | 2 cut(s) | 2576, 3546 |
| FokI | GGATG | 6 cut(s) | 86, 761, 2278, 2673, 3266, 3375 |
| FriOI | GRGCYC | 4 cut(s) | 1147, 1655, 2335, 3663 |
| FspBI | CTAG | 9 cut(s) | 998, 1121, 1343, 1445, 1596, 1671, 1770, 2747, 3087 |
| GsaI | CCCAGC | 2 cut(s) | 2226, 2449 |
| GsuI | CTGGAG | 3 cut(s) | 1714, 2412, 3630 |
| HaeIII | GGCC | 5 cut(s) | 1210, 1735, 1787, 2848, 3003 |
| HapII | CCGG | 3 cut(s) | 3407, 3540, 3654 |
| HgaI | GACGC | 1 cut(s) | 588 |
| Hin1I | GRCGYC | 1 cut(s) | 2828 |
| HincII | GTYRAC | 5 cut(s) | 79, 109, 2800, 3343, 3547 |
| HindII | GTYRAC | 5 cut(s) | 79, 109, 2800, 3343, 3547 |
| HindIII | AAGCTT | 2 cut(s) | 1460, 2696 |
| HpaI | GTTAAC | 1 cut(s) | 2800 |
| HpaII | CCGG | 3 cut(s) | 3407, 3540, 3654 |
| HphI | GGTGA | 7 cut(s) | 1312, 1340, 1901, 2462, 2904, 3173, 3187 |
| Hpy99I | CGWCG | 3 cut(s) | 604, 3479, 3551 |
| HpyCH4IV | ACGT | 6 cut(s) | 238, 316, 349, 427, 460, 2828 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1124, 1459, 1754, 2626, 3641 |
| HpySE526I | ACGT | 6 cut(s) | 238, 316, 349, 427, 460, 2828 |
| Hsp92I | GRCGYC | 1 cut(s) | 2828 |
| Ksp22I | TGATCA | 1 cut(s) | 1762 |
| KspAI | GTTAAC | 1 cut(s) | 2800 |
| LguI | GCTCTTC | 4 cut(s) | 11, 1368, 1443, 1755 |
| LweI | GCATC | 7 cut(s) | 161, 783, 814, 1399, 2310, 2629, 2999 |
| MaeI | CTAG | 9 cut(s) | 998, 1121, 1343, 1445, 1596, 1671, 1770, 2747, 3087 |
| MaeII | ACGT | 6 cut(s) | 238, 316, 349, 427, 460, 2828 |
| MbiI | CCGCTC | 1 cut(s) | 3159 |
| MfeI | CAATTG | 6 cut(s) | 1282, 2624, 2763, 2850, 3591, 3618 |
| MflI | RGATCY | 4 cut(s) | 3402, 3577, 3586, 3613 |
| MhlI | GDGCHC | 5 cut(s) | 1147, 1655, 2073, 2335, 3663 |
| MlsI | TGGCCA | 1 cut(s) | 1210 |
| MluNI | TGGCCA | 1 cut(s) | 1210 |
| MlyI | GAGTC | 7 cut(s) | 1559, 1721, 2072, 2432, 2690, 3388, 3552 |
| MmeI | TCCRAC | 3 cut(s) | 862, 3424, 3674 |
| Mox20I | TGGCCA | 1 cut(s) | 1210 |
| Mph1103I | ATGCAT | 1 cut(s) | 1259 |
| MscI | TGGCCA | 1 cut(s) | 1210 |
| MseI | TTAA | 9 cut(s) | 291, 402, 513, 900, 1425, 1862, 2511, 2799, 3231 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1793, 2309 |
| Msp20I | TGGCCA | 1 cut(s) | 1210 |
| MspA1I | CMGCKG | 4 cut(s) | 947, 1052, 1206, 2222 |
| MspI | CCGG | 3 cut(s) | 3407, 3540, 3654 |
| MspR9I | CCNGG | 8 cut(s) | 357, 704, 1732, 1737, 2430, 2617, 3020, 3407 |
| MunI | CAATTG | 6 cut(s) | 1282, 2624, 2763, 2850, 3591, 3618 |
| Mva1269I | GAATGC | 3 cut(s) | 673, 1697, 3452 |
| MvaI | CCWGG | 7 cut(s) | 357, 704, 1732, 1737, 2430, 2617, 3020 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1124, 1459, 1754, 2626, 3641 |
| NciI | CCSGG | 1 cut(s) | 3407 |
| NcoI | CCATGG | 3 cut(s) | 841, 933, 3639 |
| NdeI | CATATG | 1 cut(s) | 1759 |
| NlaIV | GGNNCC | 5 cut(s) | 1173, 1654, 2361, 2554, 2716 |
| NmuCI | GTSAC | 6 cut(s) | 871, 1516, 2682, 2755, 2767, 3601 |
| NsiI | ATGCAT | 1 cut(s) | 1259 |
| NspI | RCATGY | 2 cut(s) | 2506, 2902 |
| NspV | TTCGAA | 1 cut(s) | 3456 |
| PagI | TCATGA | 4 cut(s) | 660, 1621, 2373, 3193 |
| PciSI | GCTCTTC | 4 cut(s) | 11, 1368, 1443, 1755 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3480 |
| PctI | GAATGC | 3 cut(s) | 673, 1697, 3452 |
| PfeI | GAWTC | 9 cut(s) | 259, 370, 481, 973, 1001, 1644, 2909, 3505, 3596 |
| PflFI | GACNNNGTC | 1 cut(s) | 3470 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1976 |
| PfoI | TCCNGGA | 1 cut(s) | 355 |
| PinAI | ACCGGT | 1 cut(s) | 3653 |
| PleI | GAGTC | 7 cut(s) | 1559, 1721, 2071, 2431, 2689, 3387, 3551 |
| PpsI | GAGTC | 7 cut(s) | 1559, 1721, 2071, 2431, 2689, 3387, 3551 |
| Ppu21I | YACGTR | 1 cut(s) | 317 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3542 |
| Psp124BI | GAGCTC | 2 cut(s) | 1147, 2335 |
| Psp1406I | AACGTT | 1 cut(s) | 460 |
| Psp6I | CCWGG | 7 cut(s) | 355, 702, 1730, 1735, 2428, 2615, 3018 |
| PspFI | CCCAGC | 2 cut(s) | 2222, 2445 |
| PspGI | CCWGG | 7 cut(s) | 355, 702, 1730, 1735, 2428, 2615, 3018 |
| PspN4I | GGNNCC | 5 cut(s) | 1173, 1654, 2361, 2554, 2716 |
| PspPI | GGNCC | 2 cut(s) | 3002, 3647 |
| PstI | CTGCAG | 1 cut(s) | 1057 |
| PstNI | CAGNNNCTG | 2 cut(s) | 134, 161 |
| PsuI | RGATCY | 4 cut(s) | 3402, 3577, 3586, 3613 |
| PsyI | GACNNNGTC | 1 cut(s) | 3470 |
| PvuII | CAGCTG | 3 cut(s) | 947, 1052, 2222 |
| RsaI | GTAC | 5 cut(s) | 497, 1712, 1810, 1837, 1901 |
| RsaNI | GTAC | 5 cut(s) | 496, 1711, 1809, 1836, 1900 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1793, 2309 |
| SacI | GAGCTC | 2 cut(s) | 1147, 2335 |
| SalI | GTCGAC | 1 cut(s) | 3545 |
| SapI | GCTCTTC | 4 cut(s) | 11, 1368, 1443, 1755 |
| SaqAI | TTAA | 9 cut(s) | 291, 402, 513, 900, 1425, 1862, 2511, 2799, 3231 |
| Sau96I | GGNCC | 2 cut(s) | 3002, 3647 |
| ScaI | AGTACT | 1 cut(s) | 1810 |
| SchI | GAGTC | 7 cut(s) | 1559, 1721, 2072, 2432, 2690, 3388, 3552 |
| ScrFI | CCNGG | 8 cut(s) | 357, 704, 1732, 1737, 2430, 2617, 3020, 3407 |
| SduI | GDGCHC | 5 cut(s) | 1147, 1655, 2073, 2335, 3663 |
| SfaNI | GCATC | 7 cut(s) | 161, 783, 814, 1399, 2310, 2629, 2999 |
| SfcI | CTRYAG | 2 cut(s) | 1053, 3139 |
| SfuI | TTCGAA | 1 cut(s) | 3456 |
| SinI | GGWCC | 1 cut(s) | 3647 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1793, 2309 |
| SmlI | CTYRAG | 5 cut(s) | 284, 395, 506, 740, 1611 |
| SmoI | CTYRAG | 5 cut(s) | 284, 395, 506, 740, 1611 |
| SpeI | ACTAGT | 2 cut(s) | 1595, 1670 |
| SsiI | CCGC | 4 cut(s) | 671, 1169, 1204, 3159 |
| SspMI | CTAG | 9 cut(s) | 998, 1121, 1343, 1445, 1596, 1671, 1770, 2747, 3087 |
| SstI | GAGCTC | 2 cut(s) | 1147, 2335 |
| StyD4I | CCNGG | 8 cut(s) | 355, 702, 1730, 1735, 2428, 2615, 3018, 3405 |
| StyI | CCWWGG | 4 cut(s) | 841, 933, 3097, 3639 |
| TaiI | ACGT | 6 cut(s) | 241, 319, 352, 430, 463, 2831 |
| TaqII | GACCGA | 1 cut(s) | 2391 |
| TatI | WGTACW | 4 cut(s) | 495, 1808, 1835, 1899 |
| TauI | GCSGC | 2 cut(s) | 1172, 1206 |
| TfiI | GAWTC | 9 cut(s) | 259, 370, 481, 973, 1001, 1644, 2909, 3505, 3596 |
| Tru1I | TTAA | 9 cut(s) | 291, 402, 513, 900, 1425, 1862, 2511, 2799, 3231 |
| Tru9I | TTAA | 9 cut(s) | 291, 402, 513, 900, 1425, 1862, 2511, 2799, 3231 |
| TscAI | CASTG | 9 cut(s) | 135, 691, 1161, 1845, 2266, 2764, 2776, 3052, 3529 |
| TseFI | GTSAC | 6 cut(s) | 871, 1516, 2682, 2755, 2767, 3601 |
| Tsp45I | GTSAC | 6 cut(s) | 871, 1516, 2682, 2755, 2767, 3601 |
| TspGWI | ACGGA | 3 cut(s) | 188, 3498, 3564 |
| TspRI | CASTG | 9 cut(s) | 135, 691, 1161, 1845, 2266, 2764, 2776, 3052, 3529 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3470 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1976 |
| VpaK11BI | GGWCC | 1 cut(s) | 3647 |
| XapI | RAATTY | 7 cut(s) | 1149, 1740, 2094, 2141, 2456, 3041, 3164 |
| XbaI | TCTAGA | 1 cut(s) | 997 |
| XceI | RCATGY | 2 cut(s) | 2506, 2902 |
| XmiI | GTMKAC | 2 cut(s) | 2576, 3546 |
| XspI | CTAG | 9 cut(s) | 998, 1121, 1343, 1445, 1596, 1671, 1770, 2747, 3087 |
| ZraI | GACGTC | 1 cut(s) | 2829 |
| ZrmI | AGTACT | 1 cut(s) | 1810 |
| Zsp2I | ATGCAT | 1 cut(s) | 1259 |