Rmu_sc0003630.1_g000017

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003630.1
Physical Location & Seq
Reverse (-)
74576 .. 76412
1837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003630.1_g000017.1.cds

Sequence Viewer

Length: 1221 bp
atgggccacgctgattgtaccgccaaaggtgctaattccaaccaaaggaatgacatacaggtacaccgccaggcgggctacaacctcagcgtcggatcacccccagatcaccgccgactcgccgccactcgccgtttgtcaatgatagttccagaaaaagctgagcaattagcatggatgtttatgaaacctcttacctggcaaatgtgggtggcgagtggtggcatattaacctacacagtcttgattatatggtttctagagcgcgggtctaatccagattttagtggcctattcaaggatcagattggcacagcaacttggttcgccttcaattgtttgttcttttctcagagagagaaaatccaaaacaaattaactcgggtagttgttgtaatgtggctgtttgttgtattaatcctaacctcaagctacaccgctaatctgtcgtcaatgctcaccatccaaagattgaaaccaaatgtaacagacatcgaaatgctaaagagaaccaactcaaaggttggcttggatggggattcatttgtcttaaattacatggagaatgtacttatattcaaaccagagaacatcatcaaaataggcagcgaatacaactactcagaggcattcaaaaacaaaagtatatttgctgcctttcttgaactcccatatgcaaaagtattcatgaaccactactgcaagggatatactgcaaccacacccacctttagatttggaggactaggctttatatttcagaaaggctctccaattgcctgggatttcaccaaggccattctagagttattggaggatggcgaactgaagtcacttgaagatacttggttgagaccgaatcatgactgtccaaacaattcaacttccgatgatccagaaagcttgagtgtcaagaattttatgggcctttatgtaatatccggtgctacttccaccatttgtcttctattatccttcaccatcttgctgaaaaagtttcaacaactcgagaaagcatacctaggcaatgcaattgatgaaagtgtttggaacaggacagttagaatagcaagattcctatataatagagagttcaatgttccaagcagagctccacgttttgttgatgtgccggaattgacttcttcccaaggggagcaatgtgatcacttccacccctcaggagcatcaacttcaggcctccacccccgcacaaactga

Protein Analysis

406

Amino Acids

46.05

Weight (kDa)

8.76

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AciI CCGC 8 cut(s) 21, 67, 74, 112, 123, 267, 438, 1210
AclWI GGATC 3 cut(s) 103, 309, 887
AcsI RAATTY 1 cut(s) 916
AcuI CTGAAG 2 cut(s) 848, 1179
AfaI GTAC 3 cut(s) 19, 63, 570
AfiI CCNNNNNNNGG 3 cut(s) 45, 73, 298
AjnI CCWGG 3 cut(s) 69, 197, 779
AluBI AGCT 4 cut(s) 161, 432, 903, 1112
AluI AGCT 4 cut(s) 161, 432, 903, 1112
Alw21I GWGCWC 1 cut(s) 1114
Alw26I GTCTC 1 cut(s) 847
AlwI GGATC 3 cut(s) 103, 309, 887
Ama87I CYCGRG 2 cut(s) 381, 1007
AoxI GGCC 5 cut(s) 4, 289, 795, 925, 1198
ApeKI GCWGC 2 cut(s) 606, 653
ApoI RAATTY 1 cut(s) 916
AseI ATTAAT 1 cut(s) 416
AspA2I CCTAGG 1 cut(s) 1021
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 2 cut(s) 4, 925
AsuHPI GGTGA 5 cut(s) 90, 101, 451, 781, 970
AvaI CYCGRG 2 cut(s) 381, 1007
AvrII CCTAGG 1 cut(s) 1021
AxyI CCTNAGG 1 cut(s) 1180
BanII GRGCYC 1 cut(s) 1114
BbsI GAAGAC 1 cut(s) 956
Bbv12I GWGCWC 1 cut(s) 1114
BbvCI CCTCAGC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 618, 640
BccI CCATC 4 cut(s) 470, 527, 812, 989
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 3 cut(s) 71, 199, 781
BclI TGATCA 1 cut(s) 1165
BcoDI GTCTC 1 cut(s) 847
BfaI CTAG 4 cut(s) 260, 746, 803, 1022
BglI GCCNNNNNGGC 1 cut(s) 75
BisI GCNGC 3 cut(s) 123, 607, 654
BlnI CCTAGG 1 cut(s) 1021
BlpI GCTNAGC 1 cut(s) 162
BlsI GCNGC 3 cut(s) 124, 608, 655
Bme1390I CCNGG 3 cut(s) 71, 199, 781
BmeT110I CYCGRG 2 cut(s) 381, 1007
BmgT120I GGNCC 2 cut(s) 4, 925
BmrFI CCNGG 3 cut(s) 71, 199, 781
BmsI GCATC 1 cut(s) 1196
BpiI GAAGAC 1 cut(s) 956
Bpu10I CCTNAGC 1 cut(s) 86
Bpu1102I GCTNAGC 1 cut(s) 162
BpuEI CTTGAG 2 cut(s) 412, 925
BsaI GGTCTC 1 cut(s) 847
BsaJI CCNNGG 4 cut(s) 780, 792, 1021, 1150
BsaWI WCCGGW 1 cut(s) 941
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 73, 298
Bse21I CCTNAGG 1 cut(s) 1180
Bse3DI GCAATG 2 cut(s) 1033, 1166
BseBI CCWGG 3 cut(s) 71, 199, 781
BseDI CCNNGG 4 cut(s) 780, 792, 1021, 1150
BseGI GGATG 4 cut(s) 183, 462, 538, 823
BseLI CCNNNNNNNGG 3 cut(s) 45, 73, 298
BseMI GCAATG 2 cut(s) 1033, 1166
BseMII CTCAG 5 cut(s) 100, 153, 365, 636, 1194
BseXI GCAGC 2 cut(s) 618, 640
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 5 cut(s) 6, 291, 797, 927, 1200
BsiHKAI GWGCWC 1 cut(s) 1114
BsiHKCI CYCGRG 2 cut(s) 381, 1007
BsiSI CCGG 2 cut(s) 942, 1133
BslI CCNNNNNNNGG 3 cut(s) 45, 73, 298
BsmAI GTCTC 1 cut(s) 847
BsmI GAATGC 1 cut(s) 629
BsnI GGCC 5 cut(s) 6, 291, 797, 927, 1200
Bso31I GGTCTC 1 cut(s) 847
BsoBI CYCGRG 2 cut(s) 381, 1007
Bsp1286I GDGCHC 1 cut(s) 1114
Bsp143I GATC 5 cut(s) 95, 106, 301, 892, 1165
Bsp1720I GCTNAGC 1 cut(s) 162
BspACI CCGC 8 cut(s) 21, 67, 74, 112, 123, 267, 438, 1210
BspANI GGCC 5 cut(s) 6, 291, 797, 927, 1200
BspCNI CTCAG 5 cut(s) 99, 154, 364, 635, 1193
BspFNI CGCG 1 cut(s) 267
BspHI TCATGA 2 cut(s) 687, 862
BspPI GGATC 3 cut(s) 103, 309, 887
BspTNI GGTCTC 1 cut(s) 847
BsrDI GCAATG 2 cut(s) 1033, 1166
BssECI CCNNGG 4 cut(s) 780, 792, 1021, 1150
BssMI GATC 5 cut(s) 95, 106, 301, 892, 1165
BssT1I CCWWGG 3 cut(s) 792, 1021, 1150
Bst2UI CCWGG 3 cut(s) 71, 199, 781
Bst4CI ACNGT 3 cut(s) 241, 869, 1060
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 5 cut(s) 86, 162, 351, 622, 1180
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 4 cut(s) 183, 462, 538, 823
BstFNI CGCG 1 cut(s) 267
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 5 cut(s) 98, 109, 304, 895, 1168
BstMAI GTCTC 1 cut(s) 847
BstMBI GATC 5 cut(s) 95, 106, 301, 892, 1165
BstMWI GCNNNNNNNGC 2 cut(s) 29, 75
BstNI CCWGG 3 cut(s) 71, 199, 781
BstSCI CCNGG 3 cut(s) 69, 197, 779
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 2 cut(s) 618, 640
BstV2I GAAGAC 1 cut(s) 956
BstXI CCANNNNNNTGG 1 cut(s) 780
Bsu36I CCTNAGG 1 cut(s) 1180
BsuRI GGCC 5 cut(s) 6, 291, 797, 927, 1200
BtsCI GGATG 4 cut(s) 183, 462, 538, 823
Cac8I GCNNGC 1 cut(s) 76
CciI TCATGA 2 cut(s) 687, 862
CfoI GCGC 1 cut(s) 267
Cfr13I GGNCC 2 cut(s) 4, 925
CseI GACGC 1 cut(s) 79
Csp6I GTAC 3 cut(s) 18, 62, 569
CspCI CAANNNNNGTGG 1 cut(s) 31
CviAII CATG 4 cut(s) 174, 559, 688, 863
CviQI GTAC 3 cut(s) 18, 62, 569
DdeI CTNAG 5 cut(s) 86, 162, 351, 622, 1180
DpnI GATC 5 cut(s) 97, 108, 303, 894, 1167
DpnII GATC 5 cut(s) 95, 106, 301, 892, 1165
Ecl136II GAGCTC 1 cut(s) 1112
Eco130I CCWWGG 3 cut(s) 792, 1021, 1150
Eco147I AGGCCT 1 cut(s) 1200
Eco24I GRGCYC 1 cut(s) 1114
Eco31I GGTCTC 1 cut(s) 847
Eco53kI GAGCTC 1 cut(s) 1112
Eco57I CTGAAG 2 cut(s) 848, 1179
Eco81I CCTNAGG 1 cut(s) 1180
Eco88I CYCGRG 2 cut(s) 381, 1007
EcoICRI GAGCTC 1 cut(s) 1112
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoRII CCWGG 3 cut(s) 69, 197, 779
EcoT14I CCWWGG 3 cut(s) 792, 1021, 1150
EcoT38I GRGCYC 1 cut(s) 1114
ErhI CCWWGG 3 cut(s) 792, 1021, 1150
FaeI CATG 4 cut(s) 177, 562, 691, 866
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FatI CATG 4 cut(s) 173, 558, 687, 862
FauI CCCGC 3 cut(s) 67, 260, 1217
FauNDI CATATG 1 cut(s) 673
FbaI TGATCA 1 cut(s) 1165
Fnu4HI GCNGC 3 cut(s) 123, 607, 654
FokI GGATG 4 cut(s) 190, 449, 545, 830
FriOI GRGCYC 1 cut(s) 1114
Fsp4HI GCNGC 3 cut(s) 123, 607, 654
FspBI CTAG 4 cut(s) 260, 746, 803, 1022
GlaI GCGC 1 cut(s) 266
GluI GCNGC 3 cut(s) 123, 607, 654
HaeIII GGCC 5 cut(s) 6, 291, 797, 927, 1200
HapII CCGG 2 cut(s) 942, 1133
HgaI GACGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 267
Hin1II CATG 4 cut(s) 177, 562, 691, 866
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 901
HinfI GANTC 4 cut(s) 117, 539, 859, 1074
HpaII CCGG 2 cut(s) 942, 1133
HphI GGTGA 5 cut(s) 90, 101, 451, 781, 970
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 6 cut(s) 95, 306, 354, 625, 762, 889
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 340, 985
HpyCH4III ACNGT 3 cut(s) 241, 869, 1060
HpyCH4IV ACGT 1 cut(s) 1117
HpyCH4V TGCA 4 cut(s) 677, 702, 716, 1031
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 75
HpyF3I CTNAG 5 cut(s) 86, 162, 351, 622, 1180
HpySE526I ACGT 1 cut(s) 1117
Hsp92II CATG 4 cut(s) 177, 562, 691, 866
HspAI GCGC 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 1165
Kzo9I GATC 5 cut(s) 95, 106, 301, 892, 1165
LmnI GCTCC 3 cut(s) 1117, 1156, 1184
Lsp1109I GCAGC 2 cut(s) 618, 640
LweI GCATC 1 cut(s) 1196
MaeI CTAG 4 cut(s) 260, 746, 803, 1022
MaeII ACGT 1 cut(s) 1117
MaeIII GTNAC 2 cut(s) 484, 831
MalI GATC 5 cut(s) 97, 108, 303, 894, 1167
MboI GATC 5 cut(s) 95, 106, 301, 892, 1165
MboII GAAGA 3 cut(s) 851, 956, 1137
MfeI CAATTG 3 cut(s) 334, 774, 1032
MhlI GDGCHC 1 cut(s) 1114
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 2 cut(s) 63, 73
MnlI CCTC 8 cut(s) 95, 201, 436, 619, 734, 808, 1189, 1211
MseI TTAA 4 cut(s) 230, 377, 416, 551
MslI CAYNNNNRTG 1 cut(s) 497
MspI CCGG 2 cut(s) 942, 1133
MspR9I CCNGG 3 cut(s) 71, 199, 781
MunI CAATTG 3 cut(s) 334, 774, 1032
Mva1269I GAATGC 1 cut(s) 629
MvaI CCWGG 3 cut(s) 71, 199, 781
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 29, 75
NdeI CATATG 1 cut(s) 673
NdeII GATC 5 cut(s) 95, 106, 301, 892, 1165
NlaIII CATG 4 cut(s) 177, 562, 691, 866
NmuCI GTSAC 1 cut(s) 831
PaeR7I CTCGAG 1 cut(s) 1007
PagI TCATGA 2 cut(s) 687, 862
PceI AGGCCT 1 cut(s) 1200
PctI GAATGC 1 cut(s) 629
PfeI GAWTC 3 cut(s) 539, 859, 1074
PkrI GCNGC 3 cut(s) 124, 608, 655
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PshBI ATTAAT 1 cut(s) 416
Psp124BI GAGCTC 1 cut(s) 1114
Psp6I CCWGG 3 cut(s) 69, 197, 779
PspGI CCWGG 3 cut(s) 69, 197, 779
PspPI GGNCC 2 cut(s) 4, 925
RsaI GTAC 3 cut(s) 19, 63, 570
RsaNI GTAC 3 cut(s) 18, 62, 569
RseI CAYNNNNRTG 1 cut(s) 497
SacI GAGCTC 1 cut(s) 1114
SaqAI TTAA 4 cut(s) 230, 377, 416, 551
SatI GCNGC 3 cut(s) 123, 607, 654
Sau3AI GATC 5 cut(s) 95, 106, 301, 892, 1165
Sau96I GGNCC 2 cut(s) 4, 925
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 3 cut(s) 71, 199, 781
SduI GDGCHC 1 cut(s) 1114
SfaNI GCATC 1 cut(s) 1196
Sfr274I CTCGAG 1 cut(s) 1007
SlaI CTCGAG 1 cut(s) 1007
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 3 cut(s) 427, 904, 1007
SmoI CTYRAG 3 cut(s) 427, 904, 1007
SseBI AGGCCT 1 cut(s) 1200
SsiI CCGC 8 cut(s) 21, 67, 74, 112, 123, 267, 438, 1210
SspMI CTAG 4 cut(s) 260, 746, 803, 1022
SstI GAGCTC 1 cut(s) 1114
StuI AGGCCT 1 cut(s) 1200
StyD4I CCNGG 3 cut(s) 69, 197, 779
StyI CCWWGG 3 cut(s) 792, 1021, 1150
TaaI ACNGT 3 cut(s) 241, 869, 1060
TaiI ACGT 1 cut(s) 1120
TaqI TCGA 2 cut(s) 495, 1008
TaqII GACCGA 1 cut(s) 871
TatI WGTACW 1 cut(s) 568
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 3 cut(s) 539, 859, 1074
Tru1I TTAA 4 cut(s) 230, 377, 416, 551
Tru9I TTAA 4 cut(s) 230, 377, 416, 551
TseFI GTSAC 1 cut(s) 831
TseI GCWGC 2 cut(s) 606, 653
Tsp45I GTSAC 1 cut(s) 831
TspDTI ATGAA 5 cut(s) 200, 531, 676, 704, 1053
VspI ATTAAT 1 cut(s) 416
XagI CCTNNNNNAGG 1 cut(s) 296
XapI RAATTY 1 cut(s) 916
XbaI TCTAGA 2 cut(s) 259, 802
XhoI CTCGAG 1 cut(s) 1007
XmaJI CCTAGG 1 cut(s) 1021
XspI CTAG 4 cut(s) 260, 746, 803, 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.