Rh2DG021300

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
1241394 .. 1242542
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG021300.1

Sequence Viewer

Length: 1149 bp
ATGCAATGCCGCTGGCCATTTTTGATACGTATGTCAAGCGATGGTGCTGCTCAAATGAAATGCATTGCAGACATAGTTTCTGCATACAATTGGAAAAGGGTTGTGGTGATATACGAAGATGATGGTTACGGTGGTGATGTTGGGACACTAGCTCTTTTGTCCGAGGCTCTTCAAGATGTTGGTTCAAAGATTGGGCATCGTTTGGTTCTCCCTCAGGTTTCTTCTGAGTTTAATCCTAATTGGGTTGAACTAGAAGAGCTGTTGAAGCTTCCCACATTTCAATCTCGGGTGTTCATTGTGCTTCAGTCATCTTTACCAACTGTGACTAATCTATTCAGGGTGGCAAAGAAGATGGGACTTGTAGGAAGAGACTCAGCTTGGATAATCACAGAGAGAATTACTAGTCTGCTTGACACTCAAGTCAATCATGATATGGGAGGTATTTTGGGAATCAAGAGCTACTATGCCACTAATACTAGTTCCTATATCAAGTTCAACAAGGCATTCCAAAAAAAGTACCCAGAAAAAGAAGACTCCAGGCCAGGAATTTATGCTCTTCGAGCATATGATCATACTAGAATTGTAATACAGGCCCTAAGAATGAGTAGTAACAGTACTACTAACATTCAGGTTGTGTTAAGAACAGTGCTAAGAAATTATCAGGGTTTAAGTGGGAAAATGCACATTGAAGGAGGTGAAGTGTTGTACTCACTCATATACAGGATCGTAAACATTGTGGAAGGGAACAGATACAAAAAGTTGAACTTTTGGAGACCAGAGGTTGGGTTCTCAGAAAGCCTTTCAAAAGAAACAAGCAAAAACAGAAGTGATGGTGGTGGTGCAGTAGTTTGGCCCGGGAATCTAAGTCAACGAGCTCCTAAAGGCTGGGCAATGCCGACTGCTGATAAGCCAGTGATAATTGGGGTTCCAGGTATTTCTTCCAGTAGATTTGTAAGGGTTGAGTCAGGGCACTTTTACGGTTTCTGCATTGAAATTTTCCACAAGGTGCGAAGTCGTTTGAATTATTCTCTGCATTATGAATTTCAGGCCTTTGATGGCTCGTATGATGATCTGGTACATCAAGTCCATAACAAGGTAAAAAGTTCATTATCTTTTTTTTTTAGTTCATGTGCTCCATACATGCTGTAA

Protein Analysis

382

Amino Acids

43.16

Weight (kDa)

9.34

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 4 - 236 4e-26 Receptor family ligand binding region
Peripla_BP_6 PF13458 7 - 212 2.5e-08 Periplasmic binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 419
AccB7I CCANNNNNTGG 1 cut(s) 782
AciI CCGC 1 cut(s) 10
AclWI GGATC 1 cut(s) 731
AcoI YGGCCR 1 cut(s) 14
AcsI RAATTY 3 cut(s) 546, 993, 1040
AcuI CTGAAG 1 cut(s) 287
AdeI CACNNNGTG 1 cut(s) 1006
AfaI GTAC 4 cut(s) 518, 616, 707, 1077
AfiI CCNNNNNNNGG 2 cut(s) 782, 1093
AhlI ACTAGT 2 cut(s) 401, 476
AjnI CCWGG 3 cut(s) 536, 541, 928
AluBI AGCT 6 cut(s) 152, 259, 268, 377, 459, 875
AluI AGCT 6 cut(s) 152, 259, 268, 377, 459, 875
Alw21I GWGCWC 2 cut(s) 877, 1135
Alw26I GTCTC 2 cut(s) 363, 766
AlwI GGATC 1 cut(s) 731
Ama87I CYCGRG 2 cut(s) 285, 854
AoxI GGCC 5 cut(s) 14, 539, 591, 851, 1047
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 3 cut(s) 546, 993, 1040
AspS9I GGNCC 2 cut(s) 592, 852
AsuC2I CCSGG 2 cut(s) 855, 856
AsuHPI GGTGA 3 cut(s) 118, 146, 707
AvaI CYCGRG 2 cut(s) 285, 854
AxyI CCTNAGG 1 cut(s) 213
BaeGI GKGCMC 1 cut(s) 972
BaeI ACNNNNGTAYC 2 cut(s) 17, 50
BalI TGGCCA 1 cut(s) 16
BanII GRGCYC 1 cut(s) 877
BbsI GAAGAC 1 cut(s) 537
Bbv12I GWGCWC 2 cut(s) 877, 1135
BbvI GCAGC 1 cut(s) 34
BccI CCATC 5 cut(s) 35, 116, 346, 824, 1049
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BciT130I CCWGG 3 cut(s) 538, 543, 930
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 2 cut(s) 855, 856
BcoDI GTCTC 2 cut(s) 363, 766
BcuI ACTAGT 2 cut(s) 401, 476
BfaI CTAG 5 cut(s) 149, 251, 402, 477, 576
BisI GCNGC 2 cut(s) 10, 48
BlsI GCNGC 2 cut(s) 11, 49
BmcAI AGTACT 1 cut(s) 616
Bme1390I CCNGG 5 cut(s) 538, 543, 855, 856, 930
BmeT110I CYCGRG 2 cut(s) 285, 854
BmgT120I GGNCC 2 cut(s) 592, 852
BmiI GGNNCC 1 cut(s) 927
BmrFI CCNGG 5 cut(s) 538, 543, 855, 856, 930
BmsI GCATC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 537
BpmI CTGGAG 1 cut(s) 520
BpuEI CTTGAG 1 cut(s) 402
BpuMI CCSGG 2 cut(s) 855, 856
BsaAI YACGTR 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 766
BsaJI CCNNGG 2 cut(s) 162, 854
BsaXI ACNNNNNCTCC 2 cut(s) 684, 714
Bsc4I CCNNNNNNNGG 2 cut(s) 782, 1093
Bse1I ACTGG 2 cut(s) 911, 942
Bse21I CCTNAGG 1 cut(s) 213
Bse3DI GCAATG 3 cut(s) 11, 63, 897
BseBI CCWGG 3 cut(s) 538, 543, 930
BseDI CCNNGG 2 cut(s) 162, 854
BseLI CCNNNNNNNGG 2 cut(s) 782, 1093
BseMI GCAATG 3 cut(s) 11, 63, 897
BseMII CTCAG 4 cut(s) 216, 227, 387, 804
BseNI ACTGG 2 cut(s) 911, 942
BseSI GKGCMC 1 cut(s) 972
BseXI GCAGC 1 cut(s) 34
BseYI CCCAGC 1 cut(s) 885
BsgI GTGCAG 1 cut(s) 861
BshFI GGCC 5 cut(s) 16, 541, 593, 853, 1049
BsiHKAI GWGCWC 2 cut(s) 877, 1135
BsiHKCI CYCGRG 2 cut(s) 285, 854
BsiSI CCGG 1 cut(s) 855
BslFI GGGAC 2 cut(s) 157, 369
BslI CCNNNNNNNGG 2 cut(s) 782, 1093
BsmAI GTCTC 2 cut(s) 363, 766
BsmFI GGGAC 2 cut(s) 157, 369
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 5 cut(s) 16, 541, 593, 853, 1049
Bso31I GGTCTC 1 cut(s) 766
BsoBI CYCGRG 2 cut(s) 285, 854
Bsp1286I GDGCHC 3 cut(s) 877, 972, 1135
Bsp143I GATC 3 cut(s) 568, 723, 1069
BspACI CCGC 1 cut(s) 10
BspANI GGCC 5 cut(s) 16, 541, 593, 853, 1049
BspCNI CTCAG 4 cut(s) 217, 226, 386, 803
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 927
BspPI GGATC 1 cut(s) 731
BspQI GCTCTTC 3 cut(s) 174, 249, 561
BspTNI GGTCTC 1 cut(s) 766
BsrDI GCAATG 3 cut(s) 11, 63, 897
BsrI ACTGG 2 cut(s) 911, 942
BssECI CCNNGG 2 cut(s) 162, 854
BssMI GATC 3 cut(s) 568, 723, 1069
Bst2UI CCWGG 3 cut(s) 538, 543, 930
Bst4CI ACNGT 5 cut(s) 131, 322, 614, 646, 980
Bst6I CTCTTC 4 cut(s) 174, 249, 361, 561
BstBAI YACGTR 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 7 cut(s) 213, 225, 373, 596, 650, 790, 863
BstKTI GATC 3 cut(s) 571, 726, 1072
BstMAI GTCTC 2 cut(s) 363, 766
BstMBI GATC 3 cut(s) 568, 723, 1069
BstMWI GCNNNNNNNGC 2 cut(s) 265, 560
BstNI CCWGG 3 cut(s) 538, 543, 930
BstNSI RCATGY 1 cut(s) 1144
BstSCI CCNGG 5 cut(s) 536, 541, 853, 854, 928
BstSLI GKGCMC 1 cut(s) 972
BstSNI TACGTA 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 537
Bsu36I CCTNAGG 1 cut(s) 213
BsuRI GGCC 5 cut(s) 16, 541, 593, 853, 1049
BtgZI GCGATG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 651, 918
Cac8I GCNNGC 1 cut(s) 14
CciI TCATGA 1 cut(s) 427
Cfr13I GGNCC 2 cut(s) 592, 852
Cfr9I CCCGGG 1 cut(s) 854
Csp6I GTAC 4 cut(s) 517, 615, 706, 1076
CviAII CATG 3 cut(s) 428, 1128, 1141
CviQI GTAC 4 cut(s) 517, 615, 706, 1076
DdeI CTNAG 7 cut(s) 213, 225, 373, 596, 650, 790, 863
DpnI GATC 3 cut(s) 570, 725, 1071
DpnII GATC 3 cut(s) 568, 723, 1069
DraIII CACNNNGTG 1 cut(s) 1006
DrdI GACNNNNNNGTC 1 cut(s) 419
DseDI GACNNNNNNGTC 1 cut(s) 419
EaeI YGGCCR 1 cut(s) 14
Eam1104I CTCTTC 4 cut(s) 174, 249, 361, 561
EarI CTCTTC 4 cut(s) 174, 249, 361, 561
Ecl136II GAGCTC 1 cut(s) 875
Eco105I TACGTA 1 cut(s) 29
Eco147I AGGCCT 1 cut(s) 1049
Eco24I GRGCYC 1 cut(s) 877
Eco31I GGTCTC 1 cut(s) 766
Eco53kI GAGCTC 1 cut(s) 875
Eco57I CTGAAG 1 cut(s) 287
Eco81I CCTNAGG 1 cut(s) 213
Eco88I CYCGRG 2 cut(s) 285, 854
EcoICRI GAGCTC 1 cut(s) 875
EcoO109I RGGNCCY 1 cut(s) 592
EcoRII CCWGG 3 cut(s) 536, 541, 928
EcoT22I ATGCAT 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 877
FaeI CATG 3 cut(s) 431, 1131, 1144
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FaqI GGGAC 2 cut(s) 157, 369
FatI CATG 3 cut(s) 427, 1127, 1140
FauNDI CATATG 1 cut(s) 565
FbaI TGATCA 1 cut(s) 568
Fnu4HI GCNGC 2 cut(s) 10, 48
FriOI GRGCYC 1 cut(s) 877
Fsp4HI GCNGC 2 cut(s) 10, 48
FspBI CTAG 5 cut(s) 149, 251, 402, 477, 576
GluI GCNGC 2 cut(s) 10, 48
GsaI CCCAGC 1 cut(s) 889
GsuI CTGGAG 1 cut(s) 520
HaeIII GGCC 5 cut(s) 16, 541, 593, 853, 1049
HapII CCGG 1 cut(s) 855
Hin1II CATG 3 cut(s) 431, 1131, 1144
HincII GTYRAC 1 cut(s) 869
HindII GTYRAC 1 cut(s) 869
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 5 cut(s) 371, 450, 533, 859, 962
HpaII CCGG 1 cut(s) 855
HphI GGTGA 3 cut(s) 118, 146, 707
Hpy166II GTNNAC 2 cut(s) 730, 869
Hpy188I TCNGA 3 cut(s) 163, 226, 793
Hpy188III TCNNGA 3 cut(s) 173, 428, 454
Hpy8I GTNNAC 2 cut(s) 730, 869
HpyAV CCTTC 2 cut(s) 683, 734
HpyCH4III ACNGT 5 cut(s) 131, 322, 614, 646, 980
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 8 cut(s) 4, 63, 68, 83, 682, 842, 987, 1033
HpyF10VI GCNNNNNNNGC 2 cut(s) 265, 560
HpyF3I CTNAG 7 cut(s) 213, 225, 373, 596, 650, 790, 863
HpySE526I ACGT 1 cut(s) 28
Hsp92II CATG 3 cut(s) 431, 1131, 1144
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 3 cut(s) 568, 723, 1069
LguI GCTCTTC 3 cut(s) 174, 249, 561
LmnI GCTCC 2 cut(s) 880, 1138
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 205
MaeI CTAG 5 cut(s) 149, 251, 402, 477, 576
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 3 cut(s) 125, 322, 608
MalI GATC 3 cut(s) 570, 725, 1071
MboI GATC 3 cut(s) 568, 723, 1069
MboII GAAGA 9 cut(s) 128, 161, 213, 266, 361, 378, 542, 548, 930
MfeI CAATTG 1 cut(s) 88
MhlI GDGCHC 3 cut(s) 877, 972, 1135
MlsI TGGCCA 1 cut(s) 16
MluNI TGGCCA 1 cut(s) 16
MlyI GAGTC 3 cut(s) 365, 527, 971
MnlI CCTC 5 cut(s) 157, 222, 431, 686, 772
Mox20I TGGCCA 1 cut(s) 16
Mph1103I ATGCAT 1 cut(s) 65
MscI TGGCCA 1 cut(s) 16
MseI TTAA 3 cut(s) 231, 638, 668
Msp20I TGGCCA 1 cut(s) 16
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 1 cut(s) 855
MspR9I CCNGG 5 cut(s) 538, 543, 855, 856, 930
MunI CAATTG 1 cut(s) 88
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 3 cut(s) 538, 543, 930
MwoI GCNNNNNNNGC 2 cut(s) 265, 560
NciI CCSGG 2 cut(s) 855, 856
NdeI CATATG 1 cut(s) 565
NdeII GATC 3 cut(s) 568, 723, 1069
NlaIII CATG 3 cut(s) 431, 1131, 1144
NlaIV GGNNCC 1 cut(s) 927
NmuCI GTSAC 1 cut(s) 322
NsiI ATGCAT 1 cut(s) 65
NspI RCATGY 1 cut(s) 1144
PagI TCATGA 1 cut(s) 427
PceI AGGCCT 1 cut(s) 1049
PciSI GCTCTTC 3 cut(s) 174, 249, 561
PctI GAATGC 1 cut(s) 503
PfeI GAWTC 2 cut(s) 450, 859
PflMI CCANNNNNTGG 1 cut(s) 782
PkrI GCNGC 2 cut(s) 11, 49
PleI GAGTC 3 cut(s) 365, 527, 970
PpsI GAGTC 3 cut(s) 365, 527, 970
Ppu21I YACGTR 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 877
Psp6I CCWGG 3 cut(s) 536, 541, 928
PspFI CCCAGC 1 cut(s) 885
PspGI CCWGG 3 cut(s) 536, 541, 928
PspN4I GGNNCC 1 cut(s) 927
PspPI GGNCC 2 cut(s) 592, 852
RsaI GTAC 4 cut(s) 518, 616, 707, 1077
RsaNI GTAC 4 cut(s) 517, 615, 706, 1076
SacI GAGCTC 1 cut(s) 877
SapI GCTCTTC 3 cut(s) 174, 249, 561
SaqAI TTAA 3 cut(s) 231, 638, 668
SatI GCNGC 2 cut(s) 10, 48
Sau3AI GATC 3 cut(s) 568, 723, 1069
Sau96I GGNCC 2 cut(s) 592, 852
ScaI AGTACT 1 cut(s) 616
SchI GAGTC 3 cut(s) 365, 527, 971
ScrFI CCNGG 5 cut(s) 538, 543, 855, 856, 930
SduI GDGCHC 3 cut(s) 877, 972, 1135
SfaNI GCATC 1 cut(s) 205
SmaI CCCGGG 1 cut(s) 856
SmlI CTYRAG 1 cut(s) 417
SmoI CTYRAG 1 cut(s) 417
SnaBI TACGTA 1 cut(s) 29
SpeI ACTAGT 2 cut(s) 401, 476
SseBI AGGCCT 1 cut(s) 1049
SsiI CCGC 1 cut(s) 10
SspMI CTAG 5 cut(s) 149, 251, 402, 477, 576
SstI GAGCTC 1 cut(s) 877
StuI AGGCCT 1 cut(s) 1049
StyD4I CCNGG 5 cut(s) 536, 541, 853, 854, 928
TaaI ACNGT 5 cut(s) 131, 322, 614, 646, 980
TaiI ACGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 559
TatI WGTACW 2 cut(s) 614, 705
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 2 cut(s) 450, 859
Tru1I TTAA 3 cut(s) 231, 638, 668
Tru9I TTAA 3 cut(s) 231, 638, 668
TscAI CASTG 2 cut(s) 651, 918
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 5 cut(s) 71, 283, 1053, 1095, 1116
TspMI CCCGGG 1 cut(s) 854
TspRI CASTG 2 cut(s) 651, 918
Van91I CCANNNNNTGG 1 cut(s) 782
XapI RAATTY 3 cut(s) 546, 993, 1040
XceI RCATGY 1 cut(s) 1144
XmaI CCCGGG 1 cut(s) 854
XspI CTAG 5 cut(s) 149, 251, 402, 477, 576
ZrmI AGTACT 1 cut(s) 616
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.