Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Forward (+)

30813323 .. 30816966

Gene Structure 3644 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00024770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2766 bp

ATGAAACTGTGCTGGGAAAAAAAAAAAAAAAAACCAATGGCTATTCCTTGTACCAATACCTCTAACAAAATCCGAGGACTTTGGCTCCTGCTTCCTCTGCTCATCATCATCACCATGATCACTCTCTCAGATGTTGCTGAAGCTGAAAATGAGAAAATTATCATCAATGTTGGAGCAATCGTTAATATGAACACTCGTATGGGTAAAGAACAGAAAACTGCTATGGATATTGCAGCGGACAGCTTCAGCAGCCTTTCAAAGACTCATAGCCTAATCATTCATTTTCGACATTCTGACAGAGATCCCTTAATTGCTGCATCTGCTGCTGAAGAGTTGATAAACGAAAAGAAGGTAAAACTGATAATTGGCATGGAGACTTGGCAGGAAGCAGCTCTAGTAGCTGATGTGGGGAACCAAGCTCAAGTTCCGGTGATTTCATTTGCAGCACCTACTATAAACCCACCTCTAATACAACATGACTGGCCATTTTTGATACGAGTGGCAAGCGATCGTGCTGCTCAGATGAAATGCATCGCAGATGTAGTGTCTATGTACACTTGGAAAAGGGTTATTGTTATATACCAGGATGACGGTTATGGTGGTGATGCTGGGATGCTAGCTGTTTTATCTGAGGCTCTCCAAGACGTTGGCTCAAAGATTGAGCATCATTTGGTTCTCCCACGGGTTTCTTCCTTGTCTAATCCTAGTTGGGGTGAACTAGAAGAGATCTTGAAGCTTCCCACCTTTCAATCTCGGGTGTTCATTGTTCTCCAGTCGTCTTTCCCAGCAGTCACTAATCTATTCAGGGTGGCAAAAAAGATGGGACTTGTAGGAAGAGACTCAGCTTGGATAATCACAGAGAGTATTACTAGTTTGCTCGACTCTCAAGTCAATCATGATATGGTAGGTACTTTGGGAATCAAGTCCTACTATGCCAATAATACTAGTTCCTATGCTAAGTTTGTAGAGGTATTCCAAACAAGATTTGCAGAAGAAGATAACTCCAAGCCAGGAATTTATGCTCTTCGAGCATACGATCTTATTATAATCGTATCAAAGGCCATGAGGAACACTACTAACAGTACTAACCTTCAGGTGTTGTTAAATACAGTACTGAACAATTATACGTGTTTAAGTGGCAAAATGCACTTCAAAAGAGGTGAAGTATTGTACACTCCAATATTCAGGATCATAAATATTGTGGAAGGGAACAGATACAAAGAATTGGACCTTTGGAGACCAGAGGTTGGGTTCTCACAGAGCCTTTCAAAAGAGACAAGCAAAAACAGAAGTGATGATGTTGGTACAGTAGTTTGGCCCGGCAACCTAACTGAACGAGCCCCTAAAGGCTGGGCAATGCCCACTGCAAGAAAGCCCTTGAGAATTGTGGTTCCAGGTAGAACTTCCTTCAGTGCATTTGTAAAGGTTGATAAAAGGAAGAACACACTGCAGTATGACGGTTTCTGCATTCAAATTTTTAACAAGGTGCTAAGTCGCTTGGGCTATCATCTGCCATATGAGCTCCATGCCGTTAATGCCTCCTATGATGATATGGTAGAACAAGTTCATAACAAGACTTTTGATGCTGGTGTTGGAGATTTCACCGTACTAGCAGACCGCTTGGACAAAGTGGAATTCACTCAGCCCTATATTGGGTCTGGTTTGTCAATGATAGTTCAAGAAAAAAATGAACAATTAACATGGATGTTTTTAAAACCTCTTACCTGGGAAATGTGGGCGGCGAGTGGTGGCGTATTAGTCTACACAATCTTGATTATATGGTTTCTGGAGCGCCCGTCTAATCCAGAATTCAGTGGCCCATTGAAGAATCAGATTGGCACCGCAACTTGGTTTGCCTTCACCTCTTTGTTCTTTTCTCACAGAGAGAAAATCCATAACAACTTAACTCGAGTAGTTGTTGTAATGTGGCTGTTTGTTGTATTAATCCTAACCTCAAGCTACACCGCTAATTTGTCGTCAATGCTCACCATCCAACGATTGAAACCAAATGTAACAGACATCGAAATGCTAAAGAGAACCAACTCAAAGGTTGGATTGGATGGGGATTCATTTGTCGTAACTTACTTGAAGAATGTACTTAAATTCAATTCACAGAGCATCATCACAATAAGCAGTGAATTCAACTACACAGAGGCATTTAAAAACAGAAGTATATCTGCTGCCTTTCTTGAACTCCCATATGCTAAAGTATTCATGAACCACTACTGCAAGGGATATACTGCGACCACACCCACCTTTAGATTTGGAGGACTAGGCTTTATATTTCAGAAAGGCTCTCCAATTGCCCTGGATTTCACCAAGGCCATTCTAGAGTTATTGGAGGATGGAGAACTGAAATCACTTGAAGATGCTTGGTTGACACCAAATCGTGACTGTCCAAAGAATGCAAGTTCTGATGTTCCAGATAGCTTGAGCGTCAAGAATTTTATGGGCCTTTATGTAATATCCAGCGCTACTTCTACCATTTGCCTTCTATTATCCTTCACTATCTTGCTGAAGAAGTTTCAACAACACAAGGATGCATACCCAGGCAATGCAAGTGATGAAAGTGTTTGGAACAGGACAGTTAGAATAGCAAGATTCCTATATAATAAAGAGTTCAATGTTCCAACCAGAGCTCCAAGTATTGTTGATGTGCCAGAATTGACTTCTTCCCAAGGGGAGCATGTGATCACTTCCACCCCTCAGGAGCATCAACTTCAGGCCTCCACCCCCGCACAAACTGAAAGCGGTCCACTACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

921

Amino Acids

103.41

Weight (kDa)

8.65

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	72 - 388	6e-37	Receptor family ligand binding region
Peripla_BP_6	PF13458	100 - 362	2.1e-14	Periplasmic binding protein
Lig_chan-Glu_bd	PF10613	477 - 562	9.5e-09	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	480 - 794	3.6e-14	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	575 - 823	3.9e-30	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1046
AasI	GACNNNNNNGTC	1 cut(s)	887
AccB1I	GGYRCC	1 cut(s)	1838
AccB7I	CCANNNNNTGG	1 cut(s)	1247
AccI	GTMKAC	1 cut(s)	1761
AciI	CCGC	7 cut(s)	236, 1618, 1739, 1842, 1965, 2736, 2751
AclWI	GGATC	2 cut(s)	296, 1196
AcoI	YGGCCR	1 cut(s)	482
AcsI	RAATTY	7 cut(s)	1014, 1473, 1634, 1808, 2102, 2138, 2443
AcuI	CTGAAG	7 cut(s)	159, 229, 348, 1076, 1393, 2537, 2705
AfaI	GTAC	9 cut(s)	52, 554, 910, 1084, 1113, 1172, 1306, 1608, 2097
AfeI	AGCGCT	1 cut(s)	2473
AfiI	CCNNNNNNNGG	5 cut(s)	710, 1247, 1652, 1653, 1848
AflIII	ACRYGT	1 cut(s)	1127
AhlI	ACTAGT	2 cut(s)	869, 944
AjnI	CCWGG	6 cut(s)	582, 1009, 1393, 1724, 2307, 2548
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
Alw21I	GWGCWC	2 cut(s)	1524, 2641
Alw26I	GTCTC	4 cut(s)	368, 831, 1231, 1268
AlwI	GGATC	2 cut(s)	296, 1196
Ama87I	CYCGRG	2 cut(s)	753, 1908
Aor51HI	AGCGCT	1 cut(s)	2473
AoxI	GGCC	7 cut(s)	482, 1059, 1316, 1816, 2322, 2452, 2724
ApeKI	GCWGC	8 cut(s)	233, 249, 314, 323, 389, 443, 515, 2180
ApoI	RAATTY	7 cut(s)	1014, 1473, 1634, 1808, 2102, 2138, 2443
AseI	ATTAAT	1 cut(s)	1943
Asp700I	GAANNNNTTC	1 cut(s)	1563
AspLEI	GCGC	2 cut(s)	1794, 2474
AspS9I	GGNCC	5 cut(s)	1228, 1317, 1817, 2452, 2753
AsuC2I	CCSGG	1 cut(s)	1320
AsuHPI	GGTGA	9 cut(s)	103, 442, 614, 725, 1172, 1594, 1852, 1978, 2308
AsuNHI	GCTAGC	1 cut(s)	616
AvaI	CYCGRG	2 cut(s)	753, 1908
AvaII	GGWCC	2 cut(s)	1228, 2753
AxyI	CCTNAGG	1 cut(s)	2706
BaeI	ACNNNNGTAYC	2 cut(s)	1296, 1329
BalI	TGGCCA	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	1838
BanII	GRGCYC	3 cut(s)	1342, 1524, 2641
Bbv12I	GWGCWC	2 cut(s)	1524, 2641
BbvI	GCAGC	8 cut(s)	245, 261, 301, 310, 401, 455, 502, 2167
BccI	CCATC	4 cut(s)	814, 1997, 2054, 2339
BceAI	ACGGC	1 cut(s)	1514
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BciT130I	CCWGG	6 cut(s)	584, 1011, 1395, 1726, 2309, 2550
BclI	TGATCA	2 cut(s)	117, 2691
BcnI	CCSGG	1 cut(s)	1320
BcoDI	GTCTC	4 cut(s)	368, 831, 1231, 1268
BcuI	ACTAGT	2 cut(s)	869, 944
BfaI	CTAG	9 cut(s)	395, 617, 705, 719, 870, 945, 1610, 2273, 2330
BfmI	CTRYAG	1 cut(s)	1448
BfoI	RGCGCY	2 cut(s)	1795, 2475
BglII	AGATCT	1 cut(s)	726
BisI	GCNGC	9 cut(s)	234, 250, 315, 324, 390, 444, 516, 1740, 2181
BlsI	GCNGC	9 cut(s)	235, 251, 316, 325, 391, 445, 517, 1741, 2182
BmcAI	AGTACT	2 cut(s)	1084, 1113
Bme1390I	CCNGG	7 cut(s)	584, 1011, 1320, 1395, 1726, 2309, 2550
Bme18I	GGWCC	2 cut(s)	1228, 2753
BmeT110I	CYCGRG	2 cut(s)	753, 1908
BmgT120I	GGNCC	5 cut(s)	1228, 1317, 1817, 2452, 2753
BmiI	GGNNCC	4 cut(s)	86, 413, 1392, 1840
BmrFI	CCNGG	7 cut(s)	584, 1011, 1320, 1395, 1726, 2309, 2550
BmtI	GCTAGC	1 cut(s)	620
BpmI	CTGGAG	2 cut(s)	755, 1808
BpuEI	CTTGAG	5 cut(s)	405, 870, 1399, 1939, 2452
BpuMI	CCSGG	1 cut(s)	1320
BsaAI	YACGTR	1 cut(s)	1128
BsaI	GGTCTC	1 cut(s)	1231
BsaJI	CCNNGG	7 cut(s)	73, 680, 1725, 2307, 2319, 2548, 2677
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	8 cut(s)	69, 99, 165, 195, 1781, 1811, 2623, 2653
Bsc4I	CCNNNNNNNGG	5 cut(s)	710, 1247, 1652, 1653, 1848
Bse1I	ACTGG	2 cut(s)	485, 772
Bse21I	CCTNAGG	1 cut(s)	2706
Bse3DI	GCAATG	2 cut(s)	1362, 2560
BseBI	CCWGG	6 cut(s)	584, 1011, 1395, 1726, 2309, 2550
BseDI	CCNNGG	7 cut(s)	73, 680, 1725, 2307, 2319, 2548, 2677
BseGI	GGATG	7 cut(s)	592, 618, 1710, 1989, 2065, 2350, 2545
BseLI	CCNNNNNNNGG	5 cut(s)	710, 1247, 1652, 1653, 1848
BseMI	GCAATG	2 cut(s)	1362, 2560
BseMII	CTCAG	6 cut(s)	141, 533, 621, 855, 1655, 2720
BseNI	ACTGG	2 cut(s)	485, 772
BseXI	GCAGC	8 cut(s)	245, 261, 301, 310, 401, 455, 502, 2167
BseYI	CCCAGC	4 cut(s)	12, 608, 784, 1350
Bsh1285I	CGRYCG	1 cut(s)	511
BshFI	GGCC	7 cut(s)	484, 1061, 1318, 1818, 2324, 2454, 2726
BshNI	GGYRCC	1 cut(s)	1838
BsiEI	CGRYCG	1 cut(s)	511
BsiHKAI	GWGCWC	2 cut(s)	1524, 2641
BsiHKCI	CYCGRG	2 cut(s)	753, 1908
BsiSI	CCGG	2 cut(s)	428, 1320
BslFI	GGGAC	1 cut(s)	837
BslI	CCNNNNNNNGG	5 cut(s)	710, 1247, 1652, 1653, 1848
BsmAI	GTCTC	4 cut(s)	368, 831, 1231, 1268
BsmFI	GGGAC	1 cut(s)	837
BsmI	GAATGC	2 cut(s)	1467, 2410
BsnI	GGCC	7 cut(s)	484, 1061, 1318, 1818, 2324, 2454, 2726
Bso31I	GGTCTC	1 cut(s)	1231
BsoBI	CYCGRG	2 cut(s)	753, 1908
Bsp1286I	GDGCHC	3 cut(s)	1342, 1524, 2641
Bsp1407I	TGTACA	2 cut(s)	552, 1170
Bsp143I	GATC	7 cut(s)	117, 301, 508, 726, 1036, 1188, 2691
BspACI	CCGC	7 cut(s)	236, 1618, 1739, 1842, 1965, 2736, 2751
BspANI	GGCC	7 cut(s)	484, 1061, 1318, 1818, 2324, 2454, 2726
BspCNI	CTCAG	6 cut(s)	140, 532, 622, 854, 1654, 2719
BspHI	TCATGA	2 cut(s)	895, 2214
BspLI	GGNNCC	4 cut(s)	86, 413, 1392, 1840
BspMAI	CTGCAG	1 cut(s)	1452
BspOI	GCTAGC	1 cut(s)	620
BspPI	GGATC	2 cut(s)	296, 1196
BspQI	GCTCTTC	1 cut(s)	1029
BspT107I	GGYRCC	1 cut(s)	1838
BspTNI	GGTCTC	1 cut(s)	1231
BsrDI	GCAATG	2 cut(s)	1362, 2560
BsrGI	TGTACA	2 cut(s)	552, 1170
BsrI	ACTGG	2 cut(s)	485, 772
BssECI	CCNNGG	7 cut(s)	73, 680, 1725, 2307, 2319, 2548, 2677
BssMI	GATC	7 cut(s)	117, 301, 508, 726, 1036, 1188, 2691
BssT1I	CCWWGG	2 cut(s)	2319, 2677
Bst2UI	CCWGG	6 cut(s)	584, 1011, 1395, 1726, 2309, 2550
Bst4CI	ACNGT	9 cut(s)	9, 593, 1082, 1111, 1309, 1460, 1606, 2396, 2587
Bst6I	CTCTTC	4 cut(s)	324, 717, 829, 1029
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstAUI	TGTACA	2 cut(s)	552, 1170
BstBAI	YACGTR	1 cut(s)	1128
BstC8I	GCNNGC	2 cut(s)	505, 618
BstDEI	CTNAG	8 cut(s)	127, 519, 630, 841, 957, 1490, 1641, 2706
BstDSI	CCRYGG	1 cut(s)	680
BstF5I	GGATG	7 cut(s)	592, 618, 1710, 1989, 2065, 2350, 2545
BstH2I	RGCGCY	2 cut(s)	1795, 2475
BstHHI	GCGC	2 cut(s)	1794, 2474
BstKTI	GATC	7 cut(s)	120, 304, 511, 729, 1039, 1191, 2694
BstMAI	GTCTC	4 cut(s)	368, 831, 1231, 1268
BstMBI	GATC	7 cut(s)	117, 301, 508, 726, 1036, 1188, 2691
BstMCI	CGRYCG	1 cut(s)	511
BstMWI	GCNNNNNNNGC	8 cut(s)	97, 249, 320, 323, 398, 1028, 1519, 1535
BstNI	CCWGG	6 cut(s)	584, 1011, 1395, 1726, 2309, 2550
BstNSI	RCATGY	1 cut(s)	2690
BstSCI	CCNGG	7 cut(s)	582, 1009, 1318, 1393, 1724, 2307, 2548
BstSFI	CTRYAG	1 cut(s)	1448
BstV1I	GCAGC	8 cut(s)	245, 261, 301, 310, 401, 455, 502, 2167
BstX2I	RGATCY	2 cut(s)	301, 726
BstXI	CCANNNNNNTGG	1 cut(s)	647
BstYI	RGATCY	2 cut(s)	301, 726
Bsu36I	CCTNAGG	1 cut(s)	2706
BsuRI	GGCC	7 cut(s)	484, 1061, 1318, 1818, 2324, 2454, 2726
BtgI	CCRYGG	1 cut(s)	680
BtgZI	GCGATG	1 cut(s)	517
BtsCI	GGATG	7 cut(s)	592, 618, 1710, 1989, 2065, 2350, 2545
BtsI	GCAGTG	3 cut(s)	1362, 1445, 2140
BtsIMutI	CAGTG	5 cut(s)	1362, 1417, 1445, 1819, 2140
Cac8I	GCNNGC	2 cut(s)	505, 618
CciI	TCATGA	2 cut(s)	895, 2214
CfoI	GCGC	2 cut(s)	1794, 2474
Cfr13I	GGNCC	5 cut(s)	1228, 1317, 1817, 2452, 2753
CseI	GACGC	1 cut(s)	2425
Csp6I	GTAC	9 cut(s)	51, 553, 909, 1083, 1112, 1171, 1305, 1607, 2096
CviAII	CATG	9 cut(s)	115, 370, 476, 896, 1063, 1526, 1701, 2215, 2687
CviQI	GTAC	9 cut(s)	51, 553, 909, 1083, 1112, 1171, 1305, 1607, 2096
DdeI	CTNAG	8 cut(s)	127, 519, 630, 841, 957, 1490, 1641, 2706
DpnI	GATC	7 cut(s)	119, 303, 510, 728, 1038, 1190, 2693
DpnII	GATC	7 cut(s)	117, 301, 508, 726, 1036, 1188, 2691
DraI	TTTAAA	2 cut(s)	1713, 2161
DrdI	GACNNNNNNGTC	1 cut(s)	887
DseDI	GACNNNNNNGTC	1 cut(s)	887
EaeI	YGGCCR	1 cut(s)	482
Eam1104I	CTCTTC	4 cut(s)	324, 717, 829, 1029
EarI	CTCTTC	4 cut(s)	324, 717, 829, 1029
Ecl136II	GAGCTC	2 cut(s)	1522, 2639
Eco130I	CCWWGG	2 cut(s)	2319, 2677
Eco147I	AGGCCT	1 cut(s)	2726
Eco24I	GRGCYC	3 cut(s)	1342, 1524, 2641
Eco31I	GGTCTC	1 cut(s)	1231
Eco47I	GGWCC	2 cut(s)	1228, 2753
Eco47III	AGCGCT	1 cut(s)	2473
Eco53kI	GAGCTC	2 cut(s)	1522, 2639
Eco57I	CTGAAG	7 cut(s)	159, 229, 348, 1076, 1393, 2537, 2705
Eco81I	CCTNAGG	1 cut(s)	2706
Eco88I	CYCGRG	2 cut(s)	753, 1908
EcoICRI	GAGCTC	2 cut(s)	1522, 2639
EcoRI	GAATTC	3 cut(s)	1634, 1808, 2138
EcoRII	CCWGG	6 cut(s)	582, 1009, 1393, 1724, 2307, 2548
EcoT14I	CCWWGG	2 cut(s)	2319, 2677
EcoT22I	ATGCAT	2 cut(s)	533, 2545
EcoT38I	GRGCYC	3 cut(s)	1342, 1524, 2641
ErhI	CCWWGG	2 cut(s)	2319, 2677
FaeI	CATG	9 cut(s)	118, 373, 479, 899, 1066, 1529, 1704, 2218, 2690
FaqI	GGGAC	1 cut(s)	837
FatI	CATG	9 cut(s)	114, 369, 475, 895, 1062, 1525, 1700, 2214, 2686
FauI	CCCGC	1 cut(s)	2743
FauNDI	CATATG	2 cut(s)	1516, 2200
FbaI	TGATCA	2 cut(s)	117, 2691
FblI	GTMKAC	1 cut(s)	1761
Fnu4HI	GCNGC	9 cut(s)	234, 250, 315, 324, 390, 444, 516, 1740, 2181
FokI	GGATG	7 cut(s)	599, 625, 1717, 1976, 2072, 2357, 2552
FriOI	GRGCYC	3 cut(s)	1342, 1524, 2641
Fsp4HI	GCNGC	9 cut(s)	234, 250, 315, 324, 390, 444, 516, 1740, 2181
FspBI	CTAG	9 cut(s)	395, 617, 705, 719, 870, 945, 1610, 2273, 2330
GlaI	GCGC	2 cut(s)	1793, 2473
GluI	GCNGC	9 cut(s)	234, 250, 315, 324, 390, 444, 516, 1740, 2181
GsaI	CCCAGC	4 cut(s)	16, 612, 788, 1354
GsuI	CTGGAG	2 cut(s)	755, 1808
HaeII	RGCGCY	2 cut(s)	1795, 2475
HaeIII	GGCC	7 cut(s)	484, 1061, 1318, 1818, 2324, 2454, 2726
HapII	CCGG	2 cut(s)	428, 1320
HgaI	GACGC	1 cut(s)	2425
HhaI	GCGC	2 cut(s)	1794, 2474
Hin1II	CATG	9 cut(s)	118, 373, 479, 899, 1066, 1529, 1704, 2218, 2690
Hin6I	GCGC	2 cut(s)	1792, 2472
HinP1I	GCGC	2 cut(s)	1792, 2472
HincII	GTYRAC	1 cut(s)	2379
HindII	GTYRAC	1 cut(s)	2379
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	7 cut(s)	262, 839, 881, 918, 1828, 2066, 2601
HpaII	CCGG	2 cut(s)	428, 1320
HphI	GGTGA	9 cut(s)	103, 442, 614, 725, 1172, 1594, 1852, 1978, 2308
Hpy166II	GTNNAC	6 cut(s)	555, 716, 1173, 1762, 2379, 2756
Hpy188I	TCNGA	8 cut(s)	74, 130, 295, 522, 631, 1833, 2289, 2416
Hpy8I	GTNNAC	6 cut(s)	555, 716, 1173, 1762, 2379, 2756
HpyAV	CCTTC	7 cut(s)	343, 1100, 1199, 1417, 1867, 2501, 2512
HpyCH4III	ACNGT	9 cut(s)	9, 593, 1082, 1111, 1309, 1460, 1606, 2396, 2587
HpyCH4IV	ACGT	2 cut(s)	645, 1127
HpyF10VI	GCNNNNNNNGC	8 cut(s)	97, 249, 320, 323, 398, 1028, 1519, 1535
HpyF3I	CTNAG	8 cut(s)	127, 519, 630, 841, 957, 1490, 1641, 2706
HpySE526I	ACGT	2 cut(s)	645, 1127
Hsp92II	CATG	9 cut(s)	118, 373, 479, 899, 1066, 1529, 1704, 2218, 2690
HspAI	GCGC	2 cut(s)	1792, 2472
Ksp22I	TGATCA	2 cut(s)	117, 2691
Kzo9I	GATC	7 cut(s)	117, 301, 508, 726, 1036, 1188, 2691
LguI	GCTCTTC	1 cut(s)	1029
LmnI	GCTCC	7 cut(s)	90, 173, 1527, 1789, 2644, 2683, 2710
Lsp1109I	GCAGC	8 cut(s)	245, 261, 301, 310, 401, 455, 502, 2167
MaeI	CTAG	9 cut(s)	395, 617, 705, 719, 870, 945, 1610, 2273, 2330
MaeII	ACGT	2 cut(s)	645, 1127
MaeIII	GTNAC	4 cut(s)	790, 2011, 2077, 2390
MalI	GATC	7 cut(s)	119, 303, 510, 728, 1038, 1190, 2693
MboI	GATC	7 cut(s)	117, 301, 508, 726, 1036, 1188, 2691
MfeI	CAATTG	1 cut(s)	2301
MflI	RGATCY	2 cut(s)	301, 726
MhlI	GDGCHC	3 cut(s)	1342, 1524, 2641
MlsI	TGGCCA	1 cut(s)	484
MluNI	TGGCCA	1 cut(s)	484
MlyI	GAGTC	3 cut(s)	256, 833, 875
MmeI	TCCRAC	5 cut(s)	151, 1573, 2017, 2032, 2654
Mox20I	TGGCCA	1 cut(s)	484
Mph1103I	ATGCAT	2 cut(s)	533, 2545
MroXI	GAANNNNTTC	1 cut(s)	1563
MscI	TGGCCA	1 cut(s)	484
MslI	CAYNNNNRTG	4 cut(s)	113, 197, 2024, 2538
Msp20I	TGGCCA	1 cut(s)	484
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	2 cut(s)	428, 1320
MspR9I	CCNGG	7 cut(s)	584, 1011, 1320, 1395, 1726, 2309, 2550
MunI	CAATTG	1 cut(s)	2301
Mva1269I	GAATGC	2 cut(s)	1467, 2410
MvaI	CCWGG	6 cut(s)	584, 1011, 1395, 1726, 2309, 2550
MwoI	GCNNNNNNNGC	8 cut(s)	97, 249, 320, 323, 398, 1028, 1519, 1535
NciI	CCSGG	1 cut(s)	1320
NdeI	CATATG	2 cut(s)	1516, 2200
NdeII	GATC	7 cut(s)	117, 301, 508, 726, 1036, 1188, 2691
NheI	GCTAGC	1 cut(s)	616
NlaIII	CATG	9 cut(s)	118, 373, 479, 899, 1066, 1529, 1704, 2218, 2690
NlaIV	GGNNCC	4 cut(s)	86, 413, 1392, 1840
NmuCI	GTSAC	2 cut(s)	790, 2390
NsiI	ATGCAT	2 cut(s)	533, 2545
NspI	RCATGY	1 cut(s)	2690
PaeR7I	CTCGAG	1 cut(s)	1908
PagI	TCATGA	2 cut(s)	895, 2214
PceI	AGGCCT	1 cut(s)	2726
PciSI	GCTCTTC	1 cut(s)	1029
PctI	GAATGC	2 cut(s)	1467, 2410
PdmI	GAANNNNTTC	1 cut(s)	1563
PfeI	GAWTC	4 cut(s)	918, 1828, 2066, 2601
PflMI	CCANNNNNTGG	1 cut(s)	1247
PkrI	GCNGC	9 cut(s)	235, 251, 316, 325, 391, 445, 517, 1741, 2182
Ple19I	CGATCG	1 cut(s)	511
PleI	GAGTC	3 cut(s)	256, 833, 875
PpsI	GAGTC	3 cut(s)	256, 833, 875
Ppu21I	YACGTR	1 cut(s)	1128
PshBI	ATTAAT	1 cut(s)	1943
PsiI	TTATAA	1 cut(s)	1046
Psp124BI	GAGCTC	2 cut(s)	1524, 2641
Psp6I	CCWGG	6 cut(s)	582, 1009, 1393, 1724, 2307, 2548
PspFI	CCCAGC	4 cut(s)	12, 608, 784, 1350
PspGI	CCWGG	6 cut(s)	582, 1009, 1393, 1724, 2307, 2548
PspN4I	GGNNCC	4 cut(s)	86, 413, 1392, 1840
PspPI	GGNCC	5 cut(s)	1228, 1317, 1817, 2452, 2753
PspXI	VCTCGAGB	1 cut(s)	1908
PsrI	GAACNNNNNNTAC	2 cut(s)	1548, 1580
PstI	CTGCAG	1 cut(s)	1452
PsuI	RGATCY	2 cut(s)	301, 726
PvuI	CGATCG	1 cut(s)	511
RsaI	GTAC	9 cut(s)	52, 554, 910, 1084, 1113, 1172, 1306, 1608, 2097
RsaNI	GTAC	9 cut(s)	51, 553, 909, 1083, 1112, 1171, 1305, 1607, 2096
RseI	CAYNNNNRTG	4 cut(s)	113, 197, 2024, 2538
SacI	GAGCTC	2 cut(s)	1524, 2641
SapI	GCTCTTC	1 cut(s)	1029
SatI	GCNGC	9 cut(s)	234, 250, 315, 324, 390, 444, 516, 1740, 2181
Sau3AI	GATC	7 cut(s)	117, 301, 508, 726, 1036, 1188, 2691
Sau96I	GGNCC	5 cut(s)	1228, 1317, 1817, 2452, 2753
ScaI	AGTACT	2 cut(s)	1084, 1113
SchI	GAGTC	3 cut(s)	256, 833, 875
ScrFI	CCNGG	7 cut(s)	584, 1011, 1320, 1395, 1726, 2309, 2550
SduI	GDGCHC	3 cut(s)	1342, 1524, 2641
SfcI	CTRYAG	1 cut(s)	1448
Sfr274I	CTCGAG	1 cut(s)	1908
SinI	GGWCC	2 cut(s)	1228, 2753
SlaI	CTCGAG	1 cut(s)	1908
SmiMI	CAYNNNNRTG	4 cut(s)	113, 197, 2024, 2538
SmlI	CTYRAG	6 cut(s)	420, 885, 1378, 1908, 1954, 2431
SmoI	CTYRAG	6 cut(s)	420, 885, 1378, 1908, 1954, 2431
SpeI	ACTAGT	2 cut(s)	869, 944
SseBI	AGGCCT	1 cut(s)	2726
SsiI	CCGC	7 cut(s)	236, 1618, 1739, 1842, 1965, 2736, 2751
SspI	AATATT	2 cut(s)	1182, 1198
SspMI	CTAG	9 cut(s)	395, 617, 705, 719, 870, 945, 1610, 2273, 2330
SstI	GAGCTC	2 cut(s)	1524, 2641
StuI	AGGCCT	1 cut(s)	2726
StyD4I	CCNGG	7 cut(s)	582, 1009, 1318, 1393, 1724, 2307, 2548
StyI	CCWWGG	2 cut(s)	2319, 2677
TaaI	ACNGT	9 cut(s)	9, 593, 1082, 1111, 1309, 1460, 1606, 2396, 2587
TaiI	ACGT	2 cut(s)	648, 1130
TaqI	TCGA	5 cut(s)	286, 879, 1027, 1909, 2022
TatI	WGTACW	5 cut(s)	552, 1082, 1111, 1170, 2095
TauI	GCSGC	1 cut(s)	1742
TfiI	GAWTC	4 cut(s)	918, 1828, 2066, 2601
TscAI	CASTG	5 cut(s)	1369, 1417, 1452, 1819, 2140
TseFI	GTSAC	2 cut(s)	790, 2390
TseI	GCWGC	8 cut(s)	233, 249, 314, 323, 389, 443, 515, 2180
Tsp45I	GTSAC	2 cut(s)	790, 2390
TspRI	CASTG	5 cut(s)	1369, 1417, 1452, 1819, 2140
Van91I	CCANNNNNTGG	1 cut(s)	1247
VpaK11BI	GGWCC	2 cut(s)	1228, 2753
VspI	ATTAAT	1 cut(s)	1943
XapI	RAATTY	7 cut(s)	1014, 1473, 1634, 1808, 2102, 2138, 2443
XbaI	TCTAGA	1 cut(s)	2329
XceI	RCATGY	1 cut(s)	2690
XhoI	CTCGAG	1 cut(s)	1908
XmiI	GTMKAC	1 cut(s)	1761
XmnI	GAANNNNTTC	1 cut(s)	1563
XspI	CTAG	9 cut(s)	395, 617, 705, 719, 870, 945, 1610, 2273, 2330
ZrmI	AGTACT	2 cut(s)	1084, 1113
Zsp2I	ATGCAT	2 cut(s)	533, 2545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.