Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Forward (+)

60266451 .. 60267146

Gene Structure 696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0447000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCAATGCAGATCAAGAAGCCAAGCCAGGGTCGCCAAAAGATTGCAATCACCAAAATTCCCAACAGGAGTAATTTACAAGTCACATTCTCGAAACGTTGTGCAGGACTGTTCAAGAAGGCTAGTGAGCTCTGCACACTTTGTGGAGTTGAGATTGCAATAGTAGTCTTTTCTCCTTCCAACAAGCCCTTCTCTTTCGGCCATCCTAGCATTAAGACCCTCATCGGCCGCTTTCTTTCTCCAAGCCCTTCATCATTTCCCAGTAGTACTCAACAAGCTCTGTACCCCAGGAAGGTTAGTGTTGAACATGAGCTCAACATGCAGCTAACCGGGACTCAAGGCCGACTGGAGGCTGAGAAAAAGCGAGGAGAAGAGCTTGACAAGATGAGTAAAGACAGCCAGCGATCGAGTCATTGTTGGTGGGAGAAGCCAATTGAGGAACTTGGATTGGATGAGCTCCAGATGTTGAAGGCTGCAATGGAGGAGCTCAAGAAGAATGTGATTGAACAAGTCCACAAAATGAATGGTCCTGCCAAATTTGCAGTACCAATATTCTCTGTGATGAATCTTGATCATCATCTTTCTGAGAGAAAGTTTGCTGAGATTAATGGATGTCATGGTTCCATGATCCCTTCTTGTGCCTATGGCTATGGACATGGTTCTTTTTTTTTAAGGCGGTTACAACTTACAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

231

Amino Acids

25.92

Weight (kDa)

9.47

Isoelectric Point (pI)

58.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	19 - 66	1.6e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	229, 676
AclI	AACGTT	1 cut(s)	97
AclWI	GGATC	1 cut(s)	622
AcoI	YGGCCR	2 cut(s)	199, 226
AcsI	RAATTY	2 cut(s)	57, 536
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	3 cut(s)	268, 284, 546
AfiI	CCNNNNNNNGG	3 cut(s)	29, 292, 349
AgsI	TTSAA	4 cut(s)	115, 305, 469, 506
AjnI	CCWGG	2 cut(s)	27, 287
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	8 cut(s)	130, 278, 313, 325, 376, 457, 487, 693
AluI	AGCT	8 cut(s)	130, 278, 313, 325, 376, 457, 487, 693
Alw21I	GWGCWC	4 cut(s)	132, 315, 459, 489
AlwI	GGATC	1 cut(s)	622
AoxI	GGCC	3 cut(s)	199, 226, 340
ApeKI	GCWGC	2 cut(s)	322, 473
ApoI	RAATTY	2 cut(s)	57, 536
AseI	ATTAAT	1 cut(s)	606
AspS9I	GGNCC	1 cut(s)	527
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	527
BanII	GRGCYC	4 cut(s)	132, 315, 459, 489
Bbv12I	GWGCWC	4 cut(s)	132, 315, 459, 489
BbvI	GCAGC	2 cut(s)	334, 460
BccI	CCATC	1 cut(s)	210
BciT130I	CCWGG	2 cut(s)	29, 289
BclI	TGATCA	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	331
BfaI	CTAG	3 cut(s)	123, 207, 694
BisI	GCNGC	3 cut(s)	229, 323, 474
BlsI	GCNGC	3 cut(s)	230, 324, 475
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	3 cut(s)	29, 289, 331
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	527
BmiI	GGNNCC	1 cut(s)	622
BmrFI	CCNGG	3 cut(s)	29, 289, 331
BmrI	ACTGGG	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	255
BpmI	CTGGAG	2 cut(s)	368, 443
BpuEI	CTTGAG	2 cut(s)	321, 473
BpuMI	CCSGG	1 cut(s)	331
BsaBI	GATNNNNATC	2 cut(s)	47, 576
BsaJI	CCNNGG	2 cut(s)	28, 287
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 292, 349
Bse1I	ACTGG	2 cut(s)	261, 351
Bse3DI	GCAATG	2 cut(s)	12, 483
Bse8I	GATNNNNATC	2 cut(s)	47, 576
BseBI	CCWGG	2 cut(s)	29, 289
BseDI	CCNNGG	2 cut(s)	28, 287
BseGI	GGATG	3 cut(s)	202, 457, 617
BseJI	GATNNNNATC	2 cut(s)	47, 576
BseLI	CCNNNNNNNGG	3 cut(s)	29, 292, 349
BseMI	GCAATG	2 cut(s)	12, 483
BseMII	CTCAG	3 cut(s)	345, 576, 591
BseNI	ACTGG	2 cut(s)	261, 351
BseRI	GAGGAG	2 cut(s)	381, 497
BseX3I	CGGCCG	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	334, 460
BsgI	GTGCAG	2 cut(s)	118, 123
Bsh1285I	CGRYCG	2 cut(s)	229, 407
BshFI	GGCC	3 cut(s)	201, 228, 342
BsiEI	CGRYCG	2 cut(s)	229, 407
BsiHKAI	GWGCWC	4 cut(s)	132, 315, 459, 489
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	3 cut(s)	29, 292, 349
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	3 cut(s)	201, 228, 342
Bsp1286I	GDGCHC	4 cut(s)	132, 315, 459, 489
Bsp143I	GATC	4 cut(s)	12, 404, 571, 627
BspACI	CCGC	2 cut(s)	229, 676
BspANI	GGCC	3 cut(s)	201, 228, 342
BspCNI	CTCAG	3 cut(s)	346, 577, 592
BspLI	GGNNCC	1 cut(s)	622
BspPI	GGATC	1 cut(s)	622
BspQI	GCTCTTC	1 cut(s)	366
BsrDI	GCAATG	2 cut(s)	12, 483
BsrI	ACTGG	2 cut(s)	261, 351
BssECI	CCNNGG	2 cut(s)	28, 287
BssMI	GATC	4 cut(s)	12, 404, 571, 627
Bst2UI	CCWGG	2 cut(s)	29, 289
Bst4CI	ACNGT	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	3 cut(s)	354, 585, 600
BstF5I	GGATG	3 cut(s)	202, 457, 617
BstKTI	GATC	4 cut(s)	15, 407, 574, 630
BstMBI	GATC	4 cut(s)	12, 404, 571, 627
BstMCI	CGRYCG	2 cut(s)	229, 407
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 207, 319, 539
BstNI	CCWGG	2 cut(s)	29, 289
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	3 cut(s)	27, 287, 329
BstV1I	GCAGC	2 cut(s)	334, 460
BstZI	CGGCCG	1 cut(s)	226
BsuRI	GGCC	3 cut(s)	201, 228, 342
BtsCI	GGATG	3 cut(s)	202, 457, 617
Cac8I	GCNNGC	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	527
Csp6I	GTAC	3 cut(s)	267, 283, 545
CviAII	CATG	5 cut(s)	308, 319, 617, 625, 656
CviQI	GTAC	3 cut(s)	267, 283, 545
DdeI	CTNAG	3 cut(s)	354, 585, 600
DpnI	GATC	4 cut(s)	14, 406, 573, 629
DpnII	GATC	4 cut(s)	12, 404, 571, 627
DraIII	CACNNNGTG	1 cut(s)	143
EaeI	YGGCCR	2 cut(s)	199, 226
EagI	CGGCCG	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Ecl136II	GAGCTC	4 cut(s)	130, 313, 457, 487
EclXI	CGGCCG	1 cut(s)	226
Eco24I	GRGCYC	4 cut(s)	132, 315, 459, 489
Eco47I	GGWCC	1 cut(s)	527
Eco52I	CGGCCG	1 cut(s)	226
Eco53kI	GAGCTC	4 cut(s)	130, 313, 457, 487
EcoICRI	GAGCTC	4 cut(s)	130, 313, 457, 487
EcoRII	CCWGG	2 cut(s)	27, 287
EcoT38I	GRGCYC	4 cut(s)	132, 315, 459, 489
FaeI	CATG	5 cut(s)	311, 322, 620, 628, 659
FaiI	YATR	7 cut(s)	309, 320, 618, 626, 645, 651, 657
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	5 cut(s)	307, 318, 616, 624, 655
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	3 cut(s)	229, 323, 474
FokI	GGATG	3 cut(s)	189, 464, 624
FriOI	GRGCYC	4 cut(s)	132, 315, 459, 489
Fsp4HI	GCNGC	3 cut(s)	229, 323, 474
FspBI	CTAG	3 cut(s)	123, 207, 694
GluI	GCNGC	3 cut(s)	229, 323, 474
GsuI	CTGGAG	2 cut(s)	368, 443
HaeIII	GGCC	3 cut(s)	201, 228, 342
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	5 cut(s)	311, 322, 620, 628, 659
HinfI	GANTC	3 cut(s)	334, 409, 565
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	1 cut(s)	586
Hpy188III	TCNNGA	6 cut(s)	16, 91, 115, 460, 490, 569
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	7 cut(s)	112, 186, 199, 258, 286, 463, 642
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	8 cut(s)	10, 47, 104, 135, 158, 322, 476, 542
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 207, 319, 539
HpyF3I	CTNAG	3 cut(s)	354, 585, 600
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	5 cut(s)	311, 322, 620, 628, 659
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	4 cut(s)	12, 404, 571, 627
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	2 cut(s)	462, 484
Lsp1109I	GCAGC	2 cut(s)	334, 460
MaeI	CTAG	3 cut(s)	123, 207, 694
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	2 cut(s)	82, 678
MalI	GATC	4 cut(s)	14, 406, 573, 629
MboI	GATC	4 cut(s)	12, 404, 571, 627
MboII	GAAGA	2 cut(s)	383, 505
MfeI	CAATTG	1 cut(s)	432
MhlI	GDGCHC	4 cut(s)	132, 315, 459, 489
MluCI	AATT	4 cut(s)	57, 73, 432, 536
MlyI	GAGTC	2 cut(s)	328, 418
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	5 cut(s)	230, 343, 359, 430, 475
MseI	TTAA	3 cut(s)	213, 606, 671
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	3 cut(s)	29, 289, 331
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	2 cut(s)	29, 289
MwoI	GCNNNNNNNGC	4 cut(s)	33, 207, 319, 539
NciI	CCSGG	1 cut(s)	331
NdeII	GATC	4 cut(s)	12, 404, 571, 627
NlaIII	CATG	5 cut(s)	311, 322, 620, 628, 659
NlaIV	GGNNCC	1 cut(s)	622
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	322
PciSI	GCTCTTC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	565
PkrI	GCNGC	3 cut(s)	230, 324, 475
Ple19I	CGATCG	1 cut(s)	407
PleI	GAGTC	2 cut(s)	328, 417
PpsI	GAGTC	2 cut(s)	328, 417
PshBI	ATTAAT	1 cut(s)	606
Psp124BI	GAGCTC	4 cut(s)	132, 315, 459, 489
Psp1406I	AACGTT	1 cut(s)	97
Psp6I	CCWGG	2 cut(s)	27, 287
PspGI	CCWGG	2 cut(s)	27, 287
PspN4I	GGNNCC	1 cut(s)	622
PspPI	GGNCC	1 cut(s)	527
PvuI	CGATCG	1 cut(s)	407
RsaI	GTAC	3 cut(s)	268, 284, 546
RsaNI	GTAC	3 cut(s)	267, 283, 545
SacI	GAGCTC	4 cut(s)	132, 315, 459, 489
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	3 cut(s)	213, 606, 671
SatI	GCNGC	3 cut(s)	229, 323, 474
Sau3AI	GATC	4 cut(s)	12, 404, 571, 627
Sau96I	GGNCC	1 cut(s)	527
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	2 cut(s)	328, 418
ScrFI	CCNGG	3 cut(s)	29, 289, 331
SduI	GDGCHC	4 cut(s)	132, 315, 459, 489
SinI	GGWCC	1 cut(s)	527
SmlI	CTYRAG	2 cut(s)	336, 488
SmoI	CTYRAG	2 cut(s)	336, 488
Sse9I	AATT	4 cut(s)	57, 73, 432, 536
SsiI	CCGC	2 cut(s)	229, 676
SspI	AATATT	1 cut(s)	552
SspMI	CTAG	3 cut(s)	123, 207, 694
SstI	GAGCTC	4 cut(s)	132, 315, 459, 489
StyD4I	CCNGG	3 cut(s)	27, 287, 329
TaaI	ACNGT	1 cut(s)	111
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	92, 407
TasI	AATT	4 cut(s)	57, 73, 432, 536
TatI	WGTACW	1 cut(s)	266
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	3 cut(s)	213, 606, 671
Tru9I	TTAA	3 cut(s)	213, 606, 671
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	322, 473
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	240, 536, 578
VpaK11BI	GGWCC	1 cut(s)	527
VspI	ATTAAT	1 cut(s)	606
XapI	RAATTY	2 cut(s)	57, 536
XceI	RCATGY	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	521
XspI	CTAG	3 cut(s)	123, 207, 694
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.