Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001709.1

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Forward (+)

648 .. 1474

Gene Structure 827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001709.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atggactcgtttgtcgtcaagttcgtgcagaatgttcttaaattcaggccagagaacatcatcaaagtgagtagtaaatacaactatgtggaggaattcaaacacaaaagaatatctgctgcctttcttgaattcccatatgcgaaaatattcgtgaaccggtactgtgagggatatactatatttcagaaaggctctccaattgcccaagatttcaccaaggccattctagagttattggaggatggagaactgaagttacttgaaggtacttggttgacaacgaaacatgactgtccaagcaatgcaacttccgatgttccagaaagcttgaacgtcaagaattttatgggcctttatgtaacatccacatctacttcgaccatttgccttctattatccttcactatcttgctgaataagtttcaacaacaccaaaatgcgtaccatggcaatgcaagtgatgaatgtgtttggaacagaacatttattatagcaagattcctatataatagagagttcaatattccaagcaaagctccaagttttgttgatgtgctggaattaacttcttcccaaggggagcaggtgatcacttccaccccttgggagcatcaacttcaggcctccacccccgcacaaactgaaggcaatccgccacattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

221

Amino Acids

25.22

Weight (kDa)

6.07

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	577
AasI	GACNNNNNNGTC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	577
AccB7I	CCANNNNNTGG	1 cut(s)	606
AciI	CCGC	2 cut(s)	636, 656
AcsI	RAATTY	4 cut(s)	41, 95, 131, 343
AcuI	CTGAAG	3 cut(s)	275, 605, 666
AfaI	GTAC	3 cut(s)	164, 271, 446
AfiI	CCNNNNNNNGG	1 cut(s)	606
AgeI	ACCGGT	1 cut(s)	159
AgsI	TTSAA	6 cut(s)	100, 131, 266, 334, 428, 523
AluBI	AGCT	2 cut(s)	330, 539
AluI	AGCT	2 cut(s)	330, 539
AoxI	GGCC	4 cut(s)	47, 222, 352, 624
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	4 cut(s)	41, 95, 131, 343
AsiGI	ACCGGT	1 cut(s)	159
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	2 cut(s)	208, 601
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	239
BclI	TGATCA	1 cut(s)	591
BfaI	CTAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	577
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	352
BmsI	GCATC	1 cut(s)	622
BsaJI	CCNNGG	4 cut(s)	219, 448, 577, 605
BsaWI	WCCGGW	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	606
Bse118I	RCCGGY	1 cut(s)	159
Bse3DI	GCAATG	2 cut(s)	310, 460
BseDI	CCNNGG	4 cut(s)	219, 448, 577, 605
BseGI	GGATG	2 cut(s)	250, 365
BseLI	CCNNNNNNNGG	1 cut(s)	606
BseMI	GCAATG	2 cut(s)	310, 460
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	47
BshFI	GGCC	4 cut(s)	49, 224, 354, 626
BshTI	ACCGGT	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	606
BsnI	GGCC	4 cut(s)	49, 224, 354, 626
Bsp143I	GATC	1 cut(s)	591
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	2 cut(s)	636, 656
BspANI	GGCC	4 cut(s)	49, 224, 354, 626
BspMI	ACCTGC	1 cut(s)	577
BsrDI	GCAATG	2 cut(s)	310, 460
BsrFI	RCCGGY	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	159
BssECI	CCNNGG	4 cut(s)	219, 448, 577, 605
BssMI	GATC	1 cut(s)	591
BssT1I	CCWWGG	4 cut(s)	219, 448, 577, 605
Bst4CI	ACNGT	2 cut(s)	167, 296
BstDSI	CCRYGG	1 cut(s)	448
BstF5I	GGATG	2 cut(s)	250, 365
BstKTI	GATC	1 cut(s)	594
BstMBI	GATC	1 cut(s)	591
BstV1I	GCAGC	1 cut(s)	106
BsuRI	GGCC	4 cut(s)	49, 224, 354, 626
BtgI	CCRYGG	1 cut(s)	448
BtsCI	GGATG	2 cut(s)	250, 365
BveI	ACCTGC	1 cut(s)	577
Cfr10I	RCCGGY	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	3 cut(s)	163, 270, 445
CspAI	ACCGGT	1 cut(s)	159
CviAII	CATG	2 cut(s)	290, 449
CviJI	RGCY	7 cut(s)	49, 195, 224, 330, 354, 539, 626
CviKI_1	RGCY	7 cut(s)	49, 195, 224, 330, 354, 539, 626
CviQI	GTAC	3 cut(s)	163, 270, 445
DpnI	GATC	1 cut(s)	593
DpnII	GATC	1 cut(s)	591
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
EciI	GGCGGA	1 cut(s)	645
Eco130I	CCWWGG	4 cut(s)	219, 448, 577, 605
Eco147I	AGGCCT	1 cut(s)	626
Eco57I	CTGAAG	3 cut(s)	275, 605, 666
EcoRI	GAATTC	2 cut(s)	95, 131
EcoT14I	CCWWGG	4 cut(s)	219, 448, 577, 605
ErhI	CCWWGG	4 cut(s)	219, 448, 577, 605
FaeI	CATG	2 cut(s)	293, 452
FatI	CATG	2 cut(s)	289, 448
FauI	CCCGC	1 cut(s)	643
FauNDI	CATATG	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	2 cut(s)	257, 352
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	4 cut(s)	49, 224, 354, 626
HapII	CCGG	1 cut(s)	160
Hin1II	CATG	2 cut(s)	293, 452
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	2 cut(s)	5, 501
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	2 cut(s)	208, 601
Hpy166II	GTNNAC	2 cut(s)	157, 279
Hpy188I	TCNGA	2 cut(s)	189, 316
Hpy188III	TCNNGA	5 cut(s)	128, 154, 230, 323, 340
Hpy8I	GTNNAC	2 cut(s)	157, 279
HpyAV	CCTTC	4 cut(s)	260, 401, 412, 641
HpyCH4III	ACNGT	2 cut(s)	167, 296
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	3 cut(s)	28, 308, 458
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	293, 452
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	1 cut(s)	591
LmnI	GCTCC	3 cut(s)	544, 583, 610
LpnPI	CCDG	7 cut(s)	31, 63, 173, 336, 545, 572, 608
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	2 cut(s)	258, 361
MalI	GATC	1 cut(s)	593
MboI	GATC	1 cut(s)	591
MboII	GAAGA	1 cut(s)	564
MfeI	CAATTG	1 cut(s)	201
MluCI	AATT	6 cut(s)	41, 95, 131, 201, 343, 563
MnlI	CCTC	4 cut(s)	85, 163, 235, 637
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	3 cut(s)	39, 566, 664
MslI	CAYNNNNRTG	3 cut(s)	65, 438, 453
MspI	CCGG	1 cut(s)	160
MunI	CAATTG	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	448
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	1 cut(s)	591
NlaIII	CATG	2 cut(s)	293, 452
PaqCI	CACCTGC	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	626
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	501
PflMI	CCANNNNNTGG	1 cut(s)	606
PinAI	ACCGGT	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	352
PsrI	GAACNNNNNNTAC	2 cut(s)	243, 275
RsaI	GTAC	3 cut(s)	164, 271, 446
RsaNI	GTAC	3 cut(s)	163, 270, 445
RseI	CAYNNNNRTG	3 cut(s)	65, 438, 453
SaqAI	TTAA	3 cut(s)	39, 566, 664
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	591
Sau96I	GGNCC	1 cut(s)	352
SetI	ASST	5 cut(s)	271, 332, 339, 541, 591
SfaNI	GCATC	1 cut(s)	622
SmiMI	CAYNNNNRTG	3 cut(s)	65, 438, 453
Sse9I	AATT	6 cut(s)	41, 95, 131, 201, 343, 563
SseBI	AGGCCT	1 cut(s)	626
SsiI	CCGC	2 cut(s)	636, 656
SspI	AATATT	2 cut(s)	150, 526
SspMI	CTAG	1 cut(s)	230
StuI	AGGCCT	1 cut(s)	626
StyI	CCWWGG	4 cut(s)	219, 448, 577, 605
TaaI	ACNGT	2 cut(s)	167, 296
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	380
TasI	AATT	6 cut(s)	41, 95, 131, 201, 343, 563
TfiI	GAWTC	1 cut(s)	501
Tru1I	TTAA	3 cut(s)	39, 566, 664
Tru9I	TTAA	3 cut(s)	39, 566, 664
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	480
Van91I	CCANNNNNTGG	1 cut(s)	606
XapI	RAATTY	4 cut(s)	41, 95, 131, 343
XbaI	TCTAGA	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.