Rmu_sc0003630.1_g000044

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003630.1
Physical Location & Seq
Reverse (-)
136259 .. 137512
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003630.1_g000044.1.cds

Sequence Viewer

Length: 1254 bp
atggagacttggaatgaagcagctctagtggctgatgtggggaaccaagcaaaagttccggtgatttcatttgcaacacctgctataaccccacctctagtgcaacgtcattggccatttttgatacgagtggcaagcgatggtgctgctcagatgaaatgcattgcagatatagtttctgcatacaattggaaaagggttattgtaatatatgaggatgatggttatggtgttgacgctgggatgctagctcttctatttgaggctctccaagatgttggttcaaagattgatcatcatttggttctcccacgggtttcttctatgtctaatcctaatttgggtgaactagaagagatattgaagcttcccagctttcaatctcgcgtgttcattgtgcttcagtcatctttaccaacggtgactaatctgttcagggtggcaaagaagatgggacttgtaggaagagactcggcttggataatcacagagagtattaccagtttacttgacgctcaagtcaatcatgatatggaaggtactctggggatcaagacctactatgtcaataatactagttcctatgccaacttcaacaaggcattccaagtaaagtatccagaagaagataactccaacccaggaatttatgctcttcgagcatttgatgtgactagaattgtaacacaggccataatgattagtaacagtactactaaccttcaggtagtgttaaatacagtgctaagcaattacatgggtttaagtgggaaaatgtttattgaaggaggtgaagtcttgtactctcccatattcaggatcataaatattgtggaagggaacaggtacaaagaattggatttttggagaccagagtttgggttcacagaaagcctaacaagcaaaaacagaagtgataatgttggtagtgtagtttggcccgggaatctaagccaaagagcccccataggctgggcaatgcctactgctgataaaccaatgagaattggggttcctaattcttccttccccgaatttgtaaaggttggttcagatgggaagagttataaaggtttctgcattcaaattttccaaatgatgcaaagtggtttgaattatcctctgccctttgaattccaatacgttgatggctcctatgatgatctggtagaactagtccataacaaggtaaaaatagcatattcatcttcttttttaagtctatgttctcctatgcaggattcaagatcgtaa

Protein Analysis

417

Amino Acids

46.41

Weight (kDa)

5.51

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1068
AarI CACCTGC 1 cut(s) 88
AasI GACNNNNNNGTC 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 88
AccB7I CCANNNNNTGG 2 cut(s) 878, 972
AccII CGCG 1 cut(s) 387
AclWI GGATC 2 cut(s) 557, 827
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 4 cut(s) 645, 1034, 1086, 1133
AcuI CTGAAG 2 cut(s) 386, 707
AfaI GTAC 4 cut(s) 541, 712, 803, 848
AfiI CCNNNNNNNGG 5 cut(s) 341, 816, 878, 972, 1186
AgsI TTSAA 9 cut(s) 285, 364, 380, 595, 785, 1085, 1114, 1133, 1245
AhlI ACTAGT 2 cut(s) 575, 1174
AjnI CCWGG 1 cut(s) 640
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AluBI AGCT 4 cut(s) 23, 251, 367, 375
AluI AGCT 4 cut(s) 23, 251, 367, 375
Alw26I GTCTC 2 cut(s) 462, 862
AlwI GGATC 2 cut(s) 557, 827
Ama87I CYCGRG 1 cut(s) 941
AoxI GGCC 3 cut(s) 113, 690, 938
ApeKI GCWGC 2 cut(s) 20, 146
ApoI RAATTY 4 cut(s) 645, 1034, 1086, 1133
AspS9I GGNCC 1 cut(s) 939
AsuC2I CCSGG 2 cut(s) 942, 943
AsuHPI GGTGA 4 cut(s) 73, 356, 433, 803
AsuNHI GCTAGC 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 941
BalI TGGCCA 1 cut(s) 115
BanII GRGCYC 1 cut(s) 964
BbvI GCAGC 2 cut(s) 32, 133
BccI CCATC 5 cut(s) 134, 215, 445, 1049, 1142
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BciT130I CCWGG 1 cut(s) 642
BciVI GTATCC 1 cut(s) 627
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 2 cut(s) 942, 943
BcoDI GTCTC 2 cut(s) 462, 862
BcuI ACTAGT 2 cut(s) 575, 1174
BfaI CTAG 7 cut(s) 26, 98, 248, 350, 576, 675, 1175
BfuAI ACCTGC 1 cut(s) 88
BfuI GTATCC 1 cut(s) 627
BisI GCNGC 2 cut(s) 21, 147
BlpI GCTNAGC 1 cut(s) 746
BlsI GCNGC 2 cut(s) 22, 148
BmcAI AGTACT 1 cut(s) 712
Bme1390I CCNGG 3 cut(s) 642, 942, 943
BmeT110I CYCGRG 1 cut(s) 941
BmgT120I GGNCC 1 cut(s) 939
BmiI GGNNCC 3 cut(s) 44, 1014, 1153
BmrFI CCNGG 3 cut(s) 642, 942, 943
BmsI GCATC 2 cut(s) 234, 1089
BmtI GCTAGC 1 cut(s) 251
Bpu1102I GCTNAGC 1 cut(s) 746
BpuEI CTTGAG 1 cut(s) 501
BpuMI CCSGG 2 cut(s) 942, 943
BsaI GGTCTC 1 cut(s) 862
BsaJI CCNNGG 3 cut(s) 311, 640, 941
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 780, 810
Bsc4I CCNNNNNNNGG 5 cut(s) 341, 816, 878, 972, 1186
Bse1I ACTGG 1 cut(s) 501
Bse3DI GCAATG 2 cut(s) 162, 984
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 3 cut(s) 311, 640, 941
BseGI GGATG 2 cut(s) 223, 249
BseLI CCNNNNNNNGG 5 cut(s) 341, 816, 878, 972, 1186
BseMI GCAATG 2 cut(s) 162, 984
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 501
BseXI GCAGC 2 cut(s) 32, 133
BseYI CCCAGC 3 cut(s) 239, 371, 972
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 3 cut(s) 115, 692, 940
BsiHKCI CYCGRG 1 cut(s) 941
BsiSI CCGG 2 cut(s) 59, 942
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 5 cut(s) 341, 816, 878, 972, 1186
BsmAI GTCTC 2 cut(s) 462, 862
BsmFI GGGAC 1 cut(s) 468
BsmI GAATGC 2 cut(s) 602, 1080
BsnI GGCC 3 cut(s) 115, 692, 940
Bso31I GGTCTC 1 cut(s) 862
BsoBI CYCGRG 1 cut(s) 941
Bsp1286I GDGCHC 1 cut(s) 964
Bsp143I GATC 5 cut(s) 292, 549, 819, 1162, 1247
Bsp1720I GCTNAGC 1 cut(s) 746
BspANI GGCC 3 cut(s) 115, 692, 940
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 1 cut(s) 387
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 3 cut(s) 44, 1014, 1153
BspMI ACCTGC 1 cut(s) 88
BspOI GCTAGC 1 cut(s) 251
BspPI GGATC 2 cut(s) 557, 827
BspQI GCTCTTC 2 cut(s) 258, 660
BspTNI GGTCTC 1 cut(s) 862
BsrDI GCAATG 2 cut(s) 162, 984
BsrI ACTGG 1 cut(s) 501
BssECI CCNNGG 3 cut(s) 311, 640, 941
BssMI GATC 5 cut(s) 292, 549, 819, 1162, 1247
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 3 cut(s) 421, 710, 742
Bst6I CTCTTC 5 cut(s) 258, 348, 460, 660, 1055
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 136, 249
BstDEI CTNAG 3 cut(s) 150, 746, 950
BstDSI CCRYGG 1 cut(s) 311
BstF5I GGATG 2 cut(s) 223, 249
BstFNI CGCG 1 cut(s) 387
BstKTI GATC 5 cut(s) 295, 552, 822, 1165, 1250
BstMAI GTCTC 2 cut(s) 462, 862
BstMBI GATC 5 cut(s) 292, 549, 819, 1162, 1247
BstMWI GCNNNNNNNGC 4 cut(s) 29, 80, 659, 900
BstNI CCWGG 1 cut(s) 642
BstSCI CCNGG 3 cut(s) 640, 940, 941
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 2 cut(s) 32, 133
BstXI CCANNNNNNTGG 1 cut(s) 278
BsuI GTATCC 1 cut(s) 627
BsuRI GGCC 3 cut(s) 115, 692, 940
BtgI CCRYGG 1 cut(s) 311
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 2 cut(s) 223, 249
BtsIMutI CAGTG 1 cut(s) 747
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 136, 249
CciI TCATGA 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 939
Cfr9I CCCGGG 1 cut(s) 941
CseI GACGC 2 cut(s) 245, 521
Csp6I GTAC 4 cut(s) 540, 711, 802, 847
CviAII CATG 2 cut(s) 527, 757
CviQI GTAC 4 cut(s) 540, 711, 802, 847
DdeI CTNAG 3 cut(s) 150, 746, 950
DpnI GATC 5 cut(s) 294, 551, 821, 1164, 1249
DpnII GATC 5 cut(s) 292, 549, 819, 1162, 1247
DrdI GACNNNNNNGTC 1 cut(s) 518
DseDI GACNNNNNNGTC 1 cut(s) 518
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 5 cut(s) 258, 348, 460, 660, 1055
EarI CTCTTC 5 cut(s) 258, 348, 460, 660, 1055
Eco24I GRGCYC 1 cut(s) 964
Eco31I GGTCTC 1 cut(s) 862
Eco57I CTGAAG 2 cut(s) 386, 707
Eco88I CYCGRG 1 cut(s) 941
EcoRI GAATTC 1 cut(s) 1133
EcoRII CCWGG 1 cut(s) 640
EcoT22I ATGCAT 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 964
FaeI CATG 2 cut(s) 530, 760
FaqI GGGAC 1 cut(s) 468
FatI CATG 2 cut(s) 526, 756
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 2 cut(s) 21, 147
FokI GGATG 2 cut(s) 230, 256
FriOI GRGCYC 1 cut(s) 964
Fsp4HI GCNGC 2 cut(s) 21, 147
FspBI CTAG 7 cut(s) 26, 98, 248, 350, 576, 675, 1175
GluI GCNGC 2 cut(s) 21, 147
GsaI CCCAGC 3 cut(s) 243, 375, 976
HaeIII GGCC 3 cut(s) 115, 692, 940
HapII CCGG 2 cut(s) 59, 942
HgaI GACGC 2 cut(s) 245, 521
Hin1II CATG 2 cut(s) 530, 760
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 3 cut(s) 470, 946, 1241
HpaII CCGG 2 cut(s) 59, 942
HphI GGTGA 4 cut(s) 73, 356, 433, 803
Hpy166II GTNNAC 4 cut(s) 235, 347, 506, 885
Hpy188I TCNGA 2 cut(s) 153, 1054
Hpy188III TCNNGA 5 cut(s) 527, 553, 620, 817, 1245
Hpy8I GTNNAC 4 cut(s) 235, 347, 506, 885
HpyAV CCTTC 5 cut(s) 530, 731, 779, 830, 1036
HpyCH4III ACNGT 3 cut(s) 421, 710, 742
HpyCH4IV ACGT 2 cut(s) 106, 1143
HpyCH4V TGCA 8 cut(s) 74, 103, 162, 167, 182, 1080, 1102, 1237
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 80, 659, 900
HpyF3I CTNAG 3 cut(s) 150, 746, 950
HpySE526I ACGT 2 cut(s) 106, 1143
Hsp92II CATG 2 cut(s) 530, 760
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 5 cut(s) 292, 549, 819, 1162, 1247
LguI GCTCTTC 2 cut(s) 258, 660
LmnI GCTCC 1 cut(s) 1157
Lsp1109I GCAGC 2 cut(s) 32, 133
LweI GCATC 2 cut(s) 234, 1089
MaeI CTAG 7 cut(s) 26, 98, 248, 350, 576, 675, 1175
MaeII ACGT 2 cut(s) 106, 1143
MaeIII GTNAC 4 cut(s) 421, 670, 682, 704
MalI GATC 5 cut(s) 294, 551, 821, 1164, 1249
MboI GATC 5 cut(s) 292, 549, 819, 1162, 1247
MfeI CAATTG 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 964
MlsI TGGCCA 1 cut(s) 115
MluNI TGGCCA 1 cut(s) 115
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 1 cut(s) 660
MnlI CCTC 5 cut(s) 105, 208, 256, 782, 1131
Mox20I TGGCCA 1 cut(s) 115
Mph1103I ATGCAT 1 cut(s) 164
MscI TGGCCA 1 cut(s) 115
MseI TTAA 3 cut(s) 734, 764, 1217
Msp20I TGGCCA 1 cut(s) 115
MspI CCGG 2 cut(s) 59, 942
MspR9I CCNGG 3 cut(s) 642, 942, 943
MunI CAATTG 1 cut(s) 187
Mva1269I GAATGC 2 cut(s) 602, 1080
MvaI CCWGG 1 cut(s) 642
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 4 cut(s) 29, 80, 659, 900
NciI CCSGG 2 cut(s) 942, 943
NdeII GATC 5 cut(s) 292, 549, 819, 1162, 1247
NheI GCTAGC 1 cut(s) 247
NlaIII CATG 2 cut(s) 530, 760
NlaIV GGNNCC 3 cut(s) 44, 1014, 1153
NmeAIII GCCGAG 1 cut(s) 452
NmuCI GTSAC 2 cut(s) 421, 670
NsiI ATGCAT 1 cut(s) 164
PagI TCATGA 1 cut(s) 526
PaqCI CACCTGC 1 cut(s) 88
PciSI GCTCTTC 2 cut(s) 258, 660
PctI GAATGC 2 cut(s) 602, 1080
PfeI GAWTC 2 cut(s) 946, 1241
PflMI CCANNNNNTGG 2 cut(s) 878, 972
PkrI GCNGC 2 cut(s) 22, 148
PleI GAGTC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 464
PsiI TTATAA 1 cut(s) 1068
Psp6I CCWGG 1 cut(s) 640
PspFI CCCAGC 3 cut(s) 239, 371, 972
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 3 cut(s) 44, 1014, 1153
PspPI GGNCC 1 cut(s) 939
RsaI GTAC 4 cut(s) 541, 712, 803, 848
RsaNI GTAC 4 cut(s) 540, 711, 802, 847
SapI GCTCTTC 2 cut(s) 258, 660
SaqAI TTAA 3 cut(s) 734, 764, 1217
SatI GCNGC 2 cut(s) 21, 147
Sau3AI GATC 5 cut(s) 292, 549, 819, 1162, 1247
Sau96I GGNCC 1 cut(s) 939
ScaI AGTACT 1 cut(s) 712
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 3 cut(s) 642, 942, 943
SduI GDGCHC 1 cut(s) 964
SfaNI GCATC 2 cut(s) 234, 1089
SmaI CCCGGG 1 cut(s) 943
SmlI CTYRAG 1 cut(s) 516
SmoI CTYRAG 1 cut(s) 516
SpeI ACTAGT 2 cut(s) 575, 1174
SspI AATATT 1 cut(s) 829
SspMI CTAG 7 cut(s) 26, 98, 248, 350, 576, 675, 1175
StyD4I CCNGG 3 cut(s) 640, 940, 941
TaaI ACNGT 3 cut(s) 421, 710, 742
TaiI ACGT 2 cut(s) 109, 1146
TaqI TCGA 1 cut(s) 658
TatI WGTACW 2 cut(s) 710, 801
TfiI GAWTC 2 cut(s) 946, 1241
Tru1I TTAA 3 cut(s) 734, 764, 1217
Tru9I TTAA 3 cut(s) 734, 764, 1217
TscAI CASTG 1 cut(s) 747
TseFI GTSAC 2 cut(s) 421, 670
TseI GCWGC 2 cut(s) 20, 146
Tsp45I GTSAC 2 cut(s) 421, 670
TspDTI ATGAA 5 cut(s) 30, 57, 170, 382, 1194
TspMI CCCGGG 1 cut(s) 941
TspRI CASTG 1 cut(s) 747
Van91I CCANNNNNTGG 2 cut(s) 878, 972
XapI RAATTY 4 cut(s) 645, 1034, 1086, 1133
XcmI CCANNNNNNNNNTGG 1 cut(s) 1145
XmaI CCCGGG 1 cut(s) 941
XspI CTAG 7 cut(s) 26, 98, 248, 350, 576, 675, 1175
ZrmI AGTACT 1 cut(s) 712
Zsp2I ATGCAT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.