Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Forward (+)

87787538 .. 87790836

Gene Structure 3299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2871 bp

ATGTCTTCTCCCTCTGCAAACCTTTACAAAGTCAAAACAATTTGGCTCTTGTCTTCTCTGCTTATCTATTTGTTCATGATTCTCTCCAATGGAGTTGCAGCTCAAAATGATATCAGTGTCACAAACGTTGGAGCAATCATTGATCTTAATTCTCGTATCGGCAAAGAGCAGAAAGTTGCCATGGAAATTGCAGCTGAAAGCTTCAACAACAAGTCCAGCACTCATGAACTAATCCTTCATTTTCGAAACTCACTCGGAGAACCCTTTCTTGCTGCTTCTGCTGCTGAAGAGTTGATAAAGGAAGAAAAAGTACAAGTGATTGTTGGCATGGAGTACTGGCCAGAAGCAGTTCTAGTAGCTGATCATGTTAAAAACCAATCTCAAGTTGTTCCGGTAGTTTCATTTGGTGCACCTCTTATAACTCCACCACTAATCCAACACCGGTGGCCTTTCTTGATACGAATGACAAGCGATGGATCAGCTCAAATGAAATGCATTGCAGACATTGTTGCTGCATACAATTGGAAAAGGGTTGTTGTGATATACGAAGACGATGGTTATGGTGGTTATATTGGATTGCTATCTCTTTTATCTGAGGCTCTTCAAGATGCTAATGCAAAGATTGAGAATCATTTGGTTCTTCCGAGACTAAATAATTCTTCGGTGTCTAAGCCTAATTGGGATGAAGTAGAAGAGCTGTTGAAGCTTCCCACCTTTCAGTCTCGGGTGTTTATTGTTCTTCAATCATCTTTACCAACAGTGACTAATCTGTTCAGAGTGGCTAAGAAGATGGGACTTGTAGGGAGAGAGTCAGCTTGGATAATCACAGAATGTATCACCAGTTTGCTTGACCCTCAAGGTAATTGCGATATGGAAGGAACTCTGGGAATCAAGACCTACTACAACGAGTCTAGTAGTTCTTACGTTGAATTTCAGAAGGAATTCCAAACCAAGTATGCAGAAGGAAATAACTCCAAGCCAGGAATTTATACTCTTCGAGCATATGATACTATTAATGTCATTTCACAGGCCATAGAAAGAATGCCTAATAACACCACTAGTACTAGCCTTCAAGGTATGATAACTAGATTGTTGAGTAATTACAAGGGTTTAAGTGGGCATATGAACTTAAGCAGATCAGGTGAAGCACTGTTGGATTCTCCGAGACTCAGGATCGTAAATGTTGTGGGTGGGAAGATGAACACAGAGTTAAACTTTTGGACACCAAATGTTGGGTTCTCAGAAGGCCTTGACACAAAGAGAATTGATGTTGTGGGTAAAGTAATTTGGCCTGGGAACCTAAGCCGTACCCCGAAAGGATGGGCAATGCCTAGTGTTGAAAAGCCAATGAGAATTGGGGTTCCAGGTAAAACTTCCTTCAGCAAATTTGTAAAGGTGGAGGATAAGGACAATCCTGATGAGAGTACATATGATGGTTTCTGCATTCAAATTTTCTATAAGGTTTTAAGTCGTTTGAATTATCCTCTGCCATACGAGTTTCATGCTGACGATGGAATCTATGATGACCTGGTTGAAAAAGTCCATAACAAGGTAACAACTTTATCTTCACTTCTTTTGTTTGTTTTTGTCACATTTGATATGTTACTGATAAACAATGTATGCTTGTCATGTTCGTCAATATGTGAACCGAAGACCTATGATGCTGTTGTTGGTGATATAACCGTTCTAGCTGACCGAATGGACAAGGTGGAATTCACTCAGCCCTATATGTGGTCAGGGTTGTCAATGATAGTACCAGAAGTAACTGATGAGGAAGCAGCATGGATGTTTATGAAACCTTTTACATGGGACATGTGGGTGGTGACCGGTTCCATTTTAATTTACACAATGTTGGCAGTATGGTTCCTAGAGAGGTCAACCAATCCCGAATTTGGTGGTCCATTGAAGGATCAAATTGGTACAGCAATTTGGTTCACCTTCTCCTCCTTGTTCTTTGCTCACAGAGAAAAAGTCTATAGCAACTTAACTCGAGTAGTTTTTATTGTATGGCTGTTTGTTGTATTGATCCTAACCTCAAGCTACACTGCTAATCTCTCTTCAATGCTCACCGTTCAACGACTGAAACCAAATGTAACAGACATCGAAATGCTAAAAAGAACCAATGCAAAAGTTGGTTTGGATGGGGATTCATTCGTGTACACATACATGGTGGGGGTTCTTGGATTCAAGGAAGTTAACTTGATGAACGTATCGAGTGAATACGACTATACAGGCTACTTCAAAAACAAAACAATATTAGCTGCCTTTCTCGAAATCCCCTATGCTGAAGTATTCTTGAACAAGTATTGTGATGGATATAATGATAACACTCCTCCCAATAGATTTGGAGGCTTAAGCTTTATGTTTCAGAAAGGCTCTCCCATTGCCAGGGATTTCACTAGGGCCATATTAGAGCTATTGGAGAATGGAGAGATTAAGAAACTTCAAAATGAGTGGTTGTCGCCGGAGGAGGAGTGCACGAAGAATTCAACTTCCAATCGACCAGAAAGCTTAAGCCTCGACAGCTTTTCTGGCCTCTATGTAATATCCGGTGCTACTTCTACCTTCTGTTTTCTACTGTCTCTTGCTATCTGGCTGAGGAGGTTTCAGCTCCAAGAAACAAATGAAGGCAATGCAAGTCCAAGTAATGAAAATATTTGGAACAAAACTGTCAGAATAGTAAAGTTTTTCAAACTTAGAGATCTTGAAATTCCAAATAGAGCTCCAACTTTTGCTAGTTATATTGTGGATTGGACTACTCCAAGGTGGGGGGATTACTCGCCTACTTCCAACACTCCAGAGCAGCCTCCGGTGTTCACGCCAGGAGAGATCGAATGCACTCCAGTAGAACATACAGAAACAAGGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

956

Amino Acids

107.73

Weight (kDa)

5.31

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	53 - 378	7.1e-13	Periplasmic binding protein
ANF_receptor	PF01094	58 - 396	2e-37	Receptor family ligand binding region
SBP_bac_3	PF00497	551 - 821	6.4e-08	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	602 - 852	1.4e-32	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
AccB7I	CCANNNNNTGG	1 cut(s)	1232
AclI	AACGTT	1 cut(s)	126
AclWI	GGATC	4 cut(s)	484, 1181, 1917, 2020
AcoI	YGGCCR	1 cut(s)	338
AcsI	RAATTY	9 cut(s)	929, 941, 984, 1385, 1449, 1712, 1889, 2485, 2709
AcuI	CTGAAG	3 cut(s)	306, 1363, 2307
AfaI	GTAC	8 cut(s)	312, 335, 1063, 1309, 1426, 1755, 1921, 2159
AfiI	CCNNNNNNNGG	6 cut(s)	1232, 1549, 1731, 1892, 2388, 2768
AflII	CTTAAG	3 cut(s)	1129, 2353, 2512
AflIII	ACRYGT	1 cut(s)	1812
AgeI	ACCGGT	2 cut(s)	441, 1826
AhlI	ACTAGT	1 cut(s)	1058
AjnI	CCWGG	6 cut(s)	979, 1291, 1363, 1527, 2387, 2821
Alw21I	GWGCWC	3 cut(s)	412, 2480, 2725
Alw26I	GTCTC	4 cut(s)	640, 726, 1159, 2586
Alw44I	GTGCAC	2 cut(s)	408, 2476
AlwI	GGATC	4 cut(s)	484, 1181, 1917, 2020
Ama87I	CYCGRG	2 cut(s)	723, 1989
AoxI	GGCC	7 cut(s)	338, 446, 1029, 1246, 1289, 2403, 2533
ApaLI	GTGCAC	2 cut(s)	408, 2476
ApeKI	GCWGC	8 cut(s)	98, 191, 272, 281, 512, 1778, 2261, 2803
ApoI	RAATTY	9 cut(s)	929, 941, 984, 1385, 1449, 1712, 1889, 2485, 2709
AseI	ATTAAT	1 cut(s)	1014
AsiGI	ACCGGT	2 cut(s)	441, 1826
Asp700I	GAANNNNTTC	3 cut(s)	264, 348, 941
AspS9I	GGNCC	2 cut(s)	1898, 2403
AsuHPI	GGTGA	6 cut(s)	829, 1154, 1685, 1834, 1927, 2059
AsuII	TTCGAA	1 cut(s)	244
AvaI	CYCGRG	2 cut(s)	723, 1989
AvaII	GGWCC	1 cut(s)	1898
BaeGI	GKGCMC	2 cut(s)	412, 2480
BalI	TGGCCA	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	2725
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
BbsI	GAAGAC	3 cut(s)	45, 555, 1658
Bbv12I	GWGCWC	3 cut(s)	412, 2480, 2725
BbvCI	CCTCAGC	1 cut(s)	2597
BbvI	GCAGC	8 cut(s)	110, 203, 259, 268, 499, 1790, 2248, 2815
BccI	CCATC	8 cut(s)	467, 548, 784, 1314, 1427, 1505, 2135, 2306
BceAI	ACGGC	1 cut(s)	1290
BcgI	CGANNNNNNTGC	2 cut(s)	1484, 1518
BciT130I	CCWGG	6 cut(s)	981, 1293, 1365, 1529, 2389, 2823
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	4 cut(s)	640, 726, 1159, 2586
BcuI	ACTAGT	1 cut(s)	1058
BfmI	CTRYAG	1 cut(s)	1975
BfrI	CTTAAG	3 cut(s)	1129, 2353, 2512
BglII	AGATCT	1 cut(s)	2701
BisI	GCNGC	8 cut(s)	99, 192, 273, 282, 513, 1779, 2262, 2804
BlsI	GCNGC	8 cut(s)	100, 193, 274, 283, 514, 1780, 2263, 2805
BmcAI	AGTACT	2 cut(s)	335, 1063
Bme1390I	CCNGG	6 cut(s)	981, 1293, 1365, 1529, 2389, 2823
Bme18I	GGWCC	1 cut(s)	1898
BmeT110I	CYCGRG	2 cut(s)	723, 1989
BmgT120I	GGNCC	2 cut(s)	1898, 2403
BmiI	GGNNCC	4 cut(s)	1298, 1362, 1831, 1865
BmrFI	CCNGG	6 cut(s)	981, 1293, 1365, 1529, 2389, 2823
BmsI	GCATC	2 cut(s)	598, 1651
BpiI	GAAGAC	3 cut(s)	45, 555, 1658
BpmI	CTGGAG	2 cut(s)	2781, 2826
Bpu10I	CCTNAGC	2 cut(s)	1301, 2597
Bpu14I	TTCGAA	1 cut(s)	244
BpuEI	CTTGAG	3 cut(s)	366, 840, 2020
BsaBI	GATNNNNATC	1 cut(s)	580
BsaJI	CCNNGG	4 cut(s)	180, 1292, 2388, 2762
BsaWI	WCCGGW	5 cut(s)	391, 441, 1826, 2549, 2809
BsaXI	ACNNNNNCTCC	2 cut(s)	2459, 2489
Bsc4I	CCNNNNNNNGG	6 cut(s)	1232, 1549, 1731, 1892, 2388, 2768
Bse118I	RCCGGY	2 cut(s)	441, 1826
Bse1I	ACTGG	3 cut(s)	341, 840, 2843
Bse3DI	GCAATG	4 cut(s)	495, 1332, 2382, 2638
Bse8I	GATNNNNATC	1 cut(s)	580
BseBI	CCWGG	6 cut(s)	981, 1293, 1365, 1529, 2389, 2823
BseDI	CCNNGG	4 cut(s)	180, 1292, 2388, 2762
BseGI	GGATG	4 cut(s)	688, 1325, 1791, 2146
BseJI	GATNNNNATC	1 cut(s)	580
BseLI	CCNNNNNNNGG	6 cut(s)	1232, 1549, 1731, 1892, 2388, 2768
BseMI	GCAATG	4 cut(s)	495, 1332, 2382, 2638
BseMII	CTCAG	5 cut(s)	585, 1183, 1254, 1733, 2588
BseNI	ACTGG	3 cut(s)	341, 840, 2843
BseRI	GAGGAG	5 cut(s)	1933, 2322, 2483, 2486, 2614
BseSI	GKGCMC	2 cut(s)	412, 2480
BseXI	GCAGC	8 cut(s)	110, 203, 259, 268, 499, 1790, 2248, 2815
BshFI	GGCC	7 cut(s)	340, 448, 1031, 1248, 1291, 2405, 2535
BshTI	ACCGGT	2 cut(s)	441, 1826
BsiHKAI	GWGCWC	3 cut(s)	412, 2480, 2725
BsiHKCI	CYCGRG	2 cut(s)	723, 1989
BsiSI	CCGG	6 cut(s)	392, 442, 1827, 2465, 2550, 2810
BslFI	GGGAC	2 cut(s)	807, 1823
BslI	CCNNNNNNNGG	6 cut(s)	1232, 1549, 1731, 1892, 2388, 2768
BsmAI	GTCTC	4 cut(s)	640, 726, 1159, 2586
BsmFI	GGGAC	2 cut(s)	807, 1823
BsmI	GAATGC	3 cut(s)	1047, 1443, 2840
BsnI	GGCC	7 cut(s)	340, 448, 1031, 1248, 1291, 2405, 2535
BsoBI	CYCGRG	2 cut(s)	723, 1989
Bsp119I	TTCGAA	1 cut(s)	244
Bsp1286I	GDGCHC	3 cut(s)	412, 2480, 2725
Bsp1407I	TGTACA	1 cut(s)	2157
Bsp143I	GATC	9 cut(s)	142, 361, 476, 1136, 1173, 1909, 2025, 2701, 2829
Bsp19I	CCATGG	1 cut(s)	180
BspANI	GGCC	7 cut(s)	340, 448, 1031, 1248, 1291, 2405, 2535
BspCNI	CTCAG	5 cut(s)	586, 1182, 1253, 1732, 2589
BspHI	TCATGA	2 cut(s)	75, 223
BspLI	GGNNCC	4 cut(s)	1298, 1362, 1831, 1865
BspPI	GGATC	4 cut(s)	484, 1181, 1917, 2020
BspQI	GCTCTTC	2 cut(s)	606, 687
BspT104I	TTCGAA	1 cut(s)	244
BspTI	CTTAAG	3 cut(s)	1129, 2353, 2512
BsrDI	GCAATG	4 cut(s)	495, 1332, 2382, 2638
BsrFI	RCCGGY	2 cut(s)	441, 1826
BsrGI	TGTACA	1 cut(s)	2157
BsrI	ACTGG	3 cut(s)	341, 840, 2843
BssAI	RCCGGY	2 cut(s)	441, 1826
BssECI	CCNNGG	4 cut(s)	180, 1292, 2388, 2762
BssMI	GATC	9 cut(s)	142, 361, 476, 1136, 1173, 1909, 2025, 2701, 2829
BssT1I	CCWWGG	2 cut(s)	180, 2762
Bst2UI	CCWGG	6 cut(s)	981, 1293, 1365, 1529, 2389, 2823
Bst4CI	ACNGT	6 cut(s)	760, 1152, 1684, 2071, 2580, 2671
Bst6I	CTCTTC	5 cut(s)	282, 606, 687, 999, 2062
BstAFI	CTTAAG	3 cut(s)	1129, 2353, 2512
BstAUI	TGTACA	1 cut(s)	2157
BstBI	TTCGAA	1 cut(s)	244
BstDEI	CTNAG	9 cut(s)	594, 669, 783, 1169, 1240, 1301, 1719, 2597, 2696
BstDSI	CCRYGG	1 cut(s)	180
BstEII	GGTNACC	1 cut(s)	1822
BstF5I	GGATG	4 cut(s)	688, 1325, 1791, 2146
BstKTI	GATC	9 cut(s)	145, 364, 479, 1139, 1176, 1912, 2028, 2704, 2832
BstMAI	GTCTC	4 cut(s)	640, 726, 1159, 2586
BstMBI	GATC	9 cut(s)	142, 361, 476, 1136, 1173, 1909, 2025, 2701, 2829
BstMWI	GCNNNNNNNGC	5 cut(s)	278, 281, 703, 2523, 2532
BstNI	CCWGG	6 cut(s)	981, 1293, 1365, 1529, 2389, 2823
BstNSI	RCATGY	1 cut(s)	1816
BstPI	GGTNACC	1 cut(s)	1822
BstSCI	CCNGG	6 cut(s)	979, 1291, 1363, 1527, 2387, 2821
BstSFI	CTRYAG	1 cut(s)	1975
BstSLI	GKGCMC	2 cut(s)	412, 2480
BstV1I	GCAGC	8 cut(s)	110, 203, 259, 268, 499, 1790, 2248, 2815
BstV2I	GAAGAC	3 cut(s)	45, 555, 1658
BstX2I	RGATCY	1 cut(s)	2701
BstYI	RGATCY	1 cut(s)	2701
BsuRI	GGCC	7 cut(s)	340, 448, 1031, 1248, 1291, 2405, 2535
BtgI	CCRYGG	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	4 cut(s)	688, 1325, 1791, 2146
BtsI	GCAGTG	1 cut(s)	2043
BtsIMutI	CAGTG	4 cut(s)	121, 765, 1148, 2043
CciI	TCATGA	2 cut(s)	75, 223
Cfr10I	RCCGGY	2 cut(s)	441, 1826
Cfr13I	GGNCC	2 cut(s)	1898, 2403
CsiI	ACCWGGT	1 cut(s)	1527
Csp6I	GTAC	8 cut(s)	311, 334, 1062, 1308, 1425, 1754, 1920, 2158
CspAI	ACCGGT	2 cut(s)	441, 1826
CspCI	CAANNNNNGTGG	4 cut(s)	425, 460, 2435, 2470
CviQI	GTAC	8 cut(s)	311, 334, 1062, 1308, 1425, 1754, 1920, 2158
DdeI	CTNAG	9 cut(s)	594, 669, 783, 1169, 1240, 1301, 1719, 2597, 2696
DpnI	GATC	9 cut(s)	144, 363, 478, 1138, 1175, 1911, 2027, 2703, 2831
DpnII	GATC	9 cut(s)	142, 361, 476, 1136, 1173, 1909, 2025, 2701, 2829
EaeI	YGGCCR	1 cut(s)	338
Eam1104I	CTCTTC	5 cut(s)	282, 606, 687, 999, 2062
EarI	CTCTTC	5 cut(s)	282, 606, 687, 999, 2062
Ecl136II	GAGCTC	1 cut(s)	2723
Eco130I	CCWWGG	2 cut(s)	180, 2762
Eco147I	AGGCCT	1 cut(s)	1248
Eco24I	GRGCYC	1 cut(s)	2725
Eco32I	GATATC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	1898
Eco53kI	GAGCTC	1 cut(s)	2723
Eco57I	CTGAAG	3 cut(s)	306, 1363, 2307
Eco88I	CYCGRG	2 cut(s)	723, 1989
Eco91I	GGTNACC	1 cut(s)	1822
EcoICRI	GAGCTC	1 cut(s)	2723
EcoO65I	GGTNACC	1 cut(s)	1822
EcoRI	GAATTC	3 cut(s)	941, 1712, 2485
EcoRII	CCWGG	6 cut(s)	979, 1291, 1363, 1527, 2387, 2821
EcoRV	GATATC	1 cut(s)	112
EcoT14I	CCWWGG	2 cut(s)	180, 2762
EcoT22I	ATGCAT	1 cut(s)	497
EcoT38I	GRGCYC	1 cut(s)	2725
ErhI	CCWWGG	2 cut(s)	180, 2762
FaqI	GGGAC	2 cut(s)	807, 1823
FauNDI	CATATG	3 cut(s)	1003, 1122, 1429
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	8 cut(s)	99, 192, 273, 282, 513, 1779, 2262, 2804
FokI	GGATG	4 cut(s)	695, 1332, 1798, 2153
FriOI	GRGCYC	1 cut(s)	2725
Fsp4HI	GCNGC	8 cut(s)	99, 192, 273, 282, 513, 1779, 2262, 2804
GluI	GCNGC	8 cut(s)	99, 192, 273, 282, 513, 1779, 2262, 2804
GsuI	CTGGAG	2 cut(s)	2781, 2826
HaeIII	GGCC	7 cut(s)	340, 448, 1031, 1248, 1291, 2405, 2535
HapII	CCGG	6 cut(s)	392, 442, 1827, 2465, 2550, 2810
HincII	GTYRAC	2 cut(s)	1878, 2197
HindII	GTYRAC	2 cut(s)	1878, 2197
HindIII	AAGCTT	4 cut(s)	199, 704, 2356, 2509
HpaI	GTTAAC	1 cut(s)	2197
HpaII	CCGG	6 cut(s)	392, 442, 1827, 2465, 2550, 2810
HphI	GGTGA	6 cut(s)	829, 1154, 1685, 1834, 1927, 2059
Hpy166II	GTNNAC	9 cut(s)	410, 1646, 1878, 1935, 2158, 2160, 2197, 2478, 2817
Hpy188I	TCNGA	9 cut(s)	257, 595, 645, 776, 936, 1164, 1243, 2370, 2675
Hpy8I	GTNNAC	9 cut(s)	410, 1646, 1878, 1935, 2158, 2160, 2197, 2478, 2817
HpyCH4III	ACNGT	6 cut(s)	760, 1152, 1684, 2071, 2580, 2671
HpyCH4IV	ACGT	3 cut(s)	126, 924, 2208
HpyF10VI	GCNNNNNNNGC	5 cut(s)	278, 281, 703, 2523, 2532
HpyF3I	CTNAG	9 cut(s)	594, 669, 783, 1169, 1240, 1301, 1719, 2597, 2696
HpySE526I	ACGT	3 cut(s)	126, 924, 2208
Ksp22I	TGATCA	1 cut(s)	361
KspAI	GTTAAC	1 cut(s)	2197
Kzo9I	GATC	9 cut(s)	142, 361, 476, 1136, 1173, 1909, 2025, 2701, 2829
LguI	GCTCTTC	2 cut(s)	606, 687
LmnI	GCTCC	3 cut(s)	131, 2616, 2728
Lsp1109I	GCAGC	8 cut(s)	110, 203, 259, 268, 499, 1790, 2248, 2815
LweI	GCATC	2 cut(s)	598, 1651
MabI	ACCWGGT	1 cut(s)	1527
MaeII	ACGT	3 cut(s)	126, 924, 2208
MaeIII	GTNAC	8 cut(s)	118, 760, 1552, 1588, 1602, 1762, 1822, 2092
MalI	GATC	9 cut(s)	144, 363, 478, 1138, 1175, 1911, 2027, 2703, 2831
MboI	GATC	9 cut(s)	142, 361, 476, 1136, 1173, 1909, 2025, 2701, 2829
MfeI	CAATTG	1 cut(s)	520
MflI	RGATCY	1 cut(s)	2701
MhlI	GDGCHC	3 cut(s)	412, 2480, 2725
MlsI	TGGCCA	1 cut(s)	340
MluNI	TGGCCA	1 cut(s)	340
MlyI	GAGTC	3 cut(s)	818, 917, 1161
MmeI	TCCRAC	5 cut(s)	109, 460, 1134, 2750, 2814
Mox20I	TGGCCA	1 cut(s)	340
Mph1103I	ATGCAT	1 cut(s)	497
MroXI	GAANNNNTTC	3 cut(s)	264, 348, 941
MscI	TGGCCA	1 cut(s)	340
MslI	CAYNNNNRTG	3 cut(s)	1817, 2105, 2165
Msp20I	TGGCCA	1 cut(s)	340
MspA1I	CMGCKG	1 cut(s)	194
MspCI	CTTAAG	3 cut(s)	1129, 2353, 2512
MspI	CCGG	6 cut(s)	392, 442, 1827, 2465, 2550, 2810
MspR9I	CCNGG	6 cut(s)	981, 1293, 1365, 1529, 2389, 2823
MunI	CAATTG	1 cut(s)	520
Mva1269I	GAATGC	3 cut(s)	1047, 1443, 2840
MvaI	CCWGG	6 cut(s)	981, 1293, 1365, 1529, 2389, 2823
MwoI	GCNNNNNNNGC	5 cut(s)	278, 281, 703, 2523, 2532
NcoI	CCATGG	1 cut(s)	180
NdeI	CATATG	3 cut(s)	1003, 1122, 1429
NdeII	GATC	9 cut(s)	142, 361, 476, 1136, 1173, 1909, 2025, 2701, 2829
NlaIV	GGNNCC	4 cut(s)	1298, 1362, 1831, 1865
NmuCI	GTSAC	4 cut(s)	118, 760, 1588, 1822
NsiI	ATGCAT	1 cut(s)	497
NspI	RCATGY	1 cut(s)	1816
NspV	TTCGAA	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	1989
PagI	TCATGA	2 cut(s)	75, 223
PceI	AGGCCT	1 cut(s)	1248
PciI	ACATGT	1 cut(s)	1812
PciSI	GCTCTTC	2 cut(s)	606, 687
PctI	GAATGC	3 cut(s)	1047, 1443, 2840
PdmI	GAANNNNTTC	3 cut(s)	264, 348, 941
PfeI	GAWTC	7 cut(s)	79, 628, 888, 1157, 1515, 2147, 2184
PflMI	CCANNNNNTGG	1 cut(s)	1232
PinAI	ACCGGT	2 cut(s)	441, 1826
PkrI	GCNGC	8 cut(s)	100, 193, 274, 283, 514, 1780, 2263, 2805
PleI	GAGTC	3 cut(s)	817, 916, 1161
PpsI	GAGTC	3 cut(s)	817, 916, 1161
PscI	ACATGT	1 cut(s)	1812
PshBI	ATTAAT	1 cut(s)	1014
PsiI	TTATAA	1 cut(s)	419
Psp124BI	GAGCTC	1 cut(s)	2725
Psp1406I	AACGTT	1 cut(s)	126
Psp6I	CCWGG	6 cut(s)	979, 1291, 1363, 1527, 2387, 2821
PspEI	GGTNACC	1 cut(s)	1822
PspGI	CCWGG	6 cut(s)	979, 1291, 1363, 1527, 2387, 2821
PspN4I	GGNNCC	4 cut(s)	1298, 1362, 1831, 1865
PspPI	GGNCC	2 cut(s)	1898, 2403
PspXI	VCTCGAGB	1 cut(s)	1989
PsuI	RGATCY	1 cut(s)	2701
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	8 cut(s)	312, 335, 1063, 1309, 1426, 1755, 1921, 2159
RsaNI	GTAC	8 cut(s)	311, 334, 1062, 1308, 1425, 1754, 1920, 2158
RseI	CAYNNNNRTG	3 cut(s)	1817, 2105, 2165
SacI	GAGCTC	1 cut(s)	2725
SapI	GCTCTTC	2 cut(s)	606, 687
SatI	GCNGC	8 cut(s)	99, 192, 273, 282, 513, 1779, 2262, 2804
Sau3AI	GATC	9 cut(s)	142, 361, 476, 1136, 1173, 1909, 2025, 2701, 2829
Sau96I	GGNCC	2 cut(s)	1898, 2403
ScaI	AGTACT	2 cut(s)	335, 1063
SchI	GAGTC	3 cut(s)	818, 917, 1161
ScrFI	CCNGG	6 cut(s)	981, 1293, 1365, 1529, 2389, 2823
SduI	GDGCHC	3 cut(s)	412, 2480, 2725
SexAI	ACCWGGT	1 cut(s)	1527
SfaNI	GCATC	2 cut(s)	598, 1651
SfcI	CTRYAG	1 cut(s)	1975
Sfr274I	CTCGAG	1 cut(s)	1989
SfuI	TTCGAA	1 cut(s)	244
SgrAI	CRCCGGYG	1 cut(s)	441
SinI	GGWCC	1 cut(s)	1898
SlaI	CTCGAG	1 cut(s)	1989
SmiMI	CAYNNNNRTG	3 cut(s)	1817, 2105, 2165
SmlI	CTYRAG	7 cut(s)	381, 855, 1129, 1989, 2035, 2353, 2512
SmoI	CTYRAG	7 cut(s)	381, 855, 1129, 1989, 2035, 2353, 2512
SpeI	ACTAGT	1 cut(s)	1058
SseBI	AGGCCT	1 cut(s)	1248
SspI	AATATT	2 cut(s)	2256, 2656
SstI	GAGCTC	1 cut(s)	2725
StuI	AGGCCT	1 cut(s)	1248
StyD4I	CCNGG	6 cut(s)	979, 1291, 1363, 1527, 2387, 2821
StyI	CCWWGG	2 cut(s)	180, 2762
TaaI	ACNGT	6 cut(s)	760, 1152, 1684, 2071, 2580, 2671
TaiI	ACGT	3 cut(s)	129, 927, 2211
TaqI	TCGA	9 cut(s)	244, 997, 1990, 2103, 2213, 2271, 2500, 2520, 2832
TaqII	GACCGA	1 cut(s)	1710
TatI	WGTACW	5 cut(s)	310, 333, 1061, 1424, 2157
TfiI	GAWTC	7 cut(s)	79, 628, 888, 1157, 1515, 2147, 2184
TscAI	CASTG	4 cut(s)	121, 765, 1155, 2050
TseFI	GTSAC	4 cut(s)	118, 760, 1588, 1822
TseI	GCWGC	8 cut(s)	98, 191, 272, 281, 512, 1778, 2261, 2803
Tsp45I	GTSAC	4 cut(s)	118, 760, 1588, 1822
TspRI	CASTG	4 cut(s)	121, 765, 1155, 2050
Van91I	CCANNNNNTGG	1 cut(s)	1232
Vha464I	CTTAAG	3 cut(s)	1129, 2353, 2512
VneI	GTGCAC	2 cut(s)	408, 2476
VpaK11BI	GGWCC	1 cut(s)	1898
VspI	ATTAAT	1 cut(s)	1014
XapI	RAATTY	9 cut(s)	929, 941, 984, 1385, 1449, 1712, 1889, 2485, 2709
XceI	RCATGY	1 cut(s)	1816
XhoI	CTCGAG	1 cut(s)	1989
XmnI	GAANNNNTTC	3 cut(s)	264, 348, 941
ZrmI	AGTACT	2 cut(s)	335, 1063
Zsp2I	ATGCAT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.