Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Reverse (-)

7174446 .. 7182491

Gene Structure 8046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011157

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3120 bp

ATGGGAGTTCCAGCTTTCTACAGATGGCTAGCGGAGAAGTATCCACTCGTCGTCGTCGATGTGGTGGAAGAAGAACCGGTTGTAATCGACGACGTTTCGATTCCGGTCGACACCAGTAAGCCAAACCCTAACGGCGAGTATGACAATCTGTACCTCGACATGAATGGGATTATTCACCCCTGTTTTCACCCTGAGGATAGGCCTTCGCCAACTACCTTTGATGAGGTATTTCAGTGCATGTTTGACTACATAGATAGGCTTTTTGTGATGGTGCGGCCTCGGAAGCTACTGTACATGGCAATTGATGGTGTTGCCCCTAGGGCGAAAATGAATCAACAGAGATCCCGGCGGTTTAGAGCTGCTAAAGATGCAGCAGATGCGGCAGCTGAAGAAGAAAGGCTGCGTGAGGAGTTTGAAATGGAGGGAAGAAAGCTTCCACCTAAACTGCATTCGCAAACTTTTGATTCCAATGTCATTACTCCTGGAACTCCATTTATGGCTGTTTTGTCAATTGCATTGCAGTACTATATTCATCTTAGATTAAATAACGATCCTGGATGGAAAAATGTTAAGGTCATTCTTTCCGATGCAAATGTTCCGGGTGAAGGGGAGCACAAGGTTATGTCCTACATTCGTCTTCAAAGAAATCTTCCTGGTTATGATCCAAATACACGTCATTGCCTGTATGGTTTGGATGCCGATTTGATTATGCTTGCCTTGGCCACCCATGAAGTTCATTTCTCCATTCTTCGAGAGGTTGTTTTCATCGCTGGACAGCAGGACAAGTGCTTCCTGTGTGGTCAGGTGGGTCATTTAGCTGCCAGTTGTGAAGGAAAGGCAAAACGGAAGGCTGGAGAGCTTGATGAGAAAGGTGATGCTGAGGCTGTGGCCAAGAAGCCATACCAGTTTCTCAATATTTGGACCCTTAGAGAATATTTGGAATATGAGATGGGGATTCCAGGTGCCTCATTTGAGATTGATATTGAGCGCATTGTGGATGACTTTATATTCCTTTGTTTCTTTGTCGGAAATGATTTCTTACCTCATATGCCTACACTGGAGATTCGGGAGGGTGCAATCAACTTGCTTTTGGCTGTATATAAAAAGGAATTTAGGGGAATGGGGGGATATCTGACTAATGCAAGCAAGCCAAATTTGAGGCGGGTGGAGCATTTCATTCAGGCAGTTGGAAGTTATGAAGATAAAATATTCCAGAAAAGAGCTCAACTGCATCTGAAGCAAGCAGAAAGAATAAAGCGTCAAAAGGCACAAGCTCGAAGAGGAGATGACGCAGAGCCCCAAGTGCAACCAGATTCTTTAGTTGCAGTTAATCGGTTTCATGGTTCTCGTCTTGCTTCAGGTCCTTCACCTGTGCCGTTTCAACAATCTGGATCTGGTAGAGGAAATCCTCAAAAGGTTGCACGCTTGTCTTCAGAGGCATCAACTGTCAGTGCTGCTATTGTTGAAGCTGAGAACATTCTTGAAGATGTTCATGAAAACAAAGAAGATTTGAAAATAAAGCTCAAGGAGGTTCTTCGTGAGAAATCTGATGCTTTTAACTCTAAAAATCCTGAAGAAGACAAGGTTAAATTGGGTGAACCTGGATGGAGAGATAGGTATTATGAAGAGAAGTTCAATGCAAAAACTCCCGAAGAACGTGAAGCAATTCGAAGAGATGTTGTTTTGCGTTACACTGAAGGTCTGTGTTGGGTGATGCACTATTATTATGAAGGGGTTTGTTCATGGCAGTGGTTTTACCCTTATCATTATGCGCCCTTTGCTTCTGATCTCAAGGACCTCGGTCAACTAGATATAAGTTTTGAATTGGGCAGTCCCTTTAAACCGTTCAATCAGCTATTAGGGGTTTTCCCTGCTGCAAGTGCCCATGCCCTTCCTGAGGCATACAGGAAGTTAATGACTGATCCAAACTCACCTCTTATTGATTTTTACCCTACTGACTTTGAAGTGGATATGAATGGGAAACGATTTGCATGGCAGGGTATTGCAAAACTCCCTTTCATTGATGAAGTCCGTCTTCTTTCTGAGGTTGAAAAACTTGAACATACATTAACGGAGGAGGAAGCACGCAGAAACAGTGTGATGTTTGAGATGCTCTTTGTTACATCTTCTCATCCTCTCTCTGTGTGCATATATTCTCTTGACAATCGATGTAAACAATTGACAGACAAAGAGCGTGTTGAGGTCAAGGAACAAATTGATCCCAAATACAGTGAAGGGATGAACGGCTATCTATCTCCATGTGCTGGAGAGCCTTGTCCTCCCGTTTTCCGGTCTCCTGTTGAAAGCATGGAGGATATAATGGACAACCAAGTCATTTGCGCAATATACAGACTACCAGATGTACATGAGCATATAACTCGACCACCAGCAGGGGTCGTTTTCCCTAAGAAGATTGTGTCATCGGGGGATATGAAGCCTGCACCTGTTTTGTGGCATGAGGATTCAGGGAGGAAGCCATGGCATGACAATTCGGGGAGGAGGCCATATGAAAGTTCTAGGCAGCACCCTCCTGGAGCCATTTCTGGTAGACAGCTTGGTGATGCCGCTCATCGACTTCTTGTTAATAGTTTACATGTTAAGGCAAACAGCAATGGGTATGGCAATCAGGTGCCTGCCCATCAACCATATGCCGAACCTCCATACTACCCACCACGCGCTTCCTACACAAGTAATGGAAGCTATGATCAGGGACACCACAGTATGGCACCACCTAGAACATTCCAGCATCCTCAAGTGCAACACCAAAATTCCTACCACCCACCTCCGAATAGACCTCATTCTCAACGTTATGAAAGAAATTCTGGTCACTCATACTATCAGTCGGCCCGTCATCAGAATGGTGGAATTGCTTACCCCCAGAGACCAATTACACCAGCTCCACCAGGGGTCAATCCAGGTCCTTATCCAGTTGGTTATAACAACTATCAGAGTTACCAACAAGCAGGGCCGCCTGGTTATCAAGGCATTGATGCCTGGGTTCCACCGCCCCAGAATATGGGCAGAGGATATGGTCGCCCTCAGCAATCTGGAAACCCATACTCTGGATTGGACAGAAGAGGAAATAGGAGACCACCTCCATCCCAGCATGGCCGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

1040

Amino Acids

118.06

Weight (kDa)

6.49

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 252	7.6e-102	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	326 - 811	1.5e-166	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2937
AasI	GACNNNNNNGTC	1 cut(s)	2330
Acc16I	TGCGCA	1 cut(s)	2341
AccB1I	GGYRCC	3 cut(s)	962, 2629, 2725
AccB7I	CCANNNNNTGG	4 cut(s)	2264, 2722, 3016, 3062
AccBSI	CCGCTC	1 cut(s)	2567
AccI	GTMKAC	2 cut(s)	108, 2548
AccII	CGCG	1 cut(s)	2676
AciI	CCGC	9 cut(s)	32, 274, 349, 380, 1162, 2565, 2969, 3005, 3112
AclI	AACGTT	1 cut(s)	2806
AclWI	GGATC	6 cut(s)	336, 545, 656, 1399, 1916, 2213
AcoI	YGGCCR	3 cut(s)	720, 888, 3109
AcsI	RAATTY	4 cut(s)	1109, 1153, 2767, 2818
AcuI	CTGAAG	6 cut(s)	408, 1256, 1341, 1416, 1593, 1716
AfaI	GTAC	4 cut(s)	152, 293, 524, 2364
AfiI	CCNNNNNNNGG	8 cut(s)	605, 1897, 2264, 2289, 2390, 2722, 3016, 3062
AflIII	ACRYGT	2 cut(s)	671, 2593
AgeI	ACCGGT	1 cut(s)	76
AjiI	CACGTC	1 cut(s)	674
Alw21I	GWGCWC	2 cut(s)	615, 1225
Alw26I	GTCTC	3 cut(s)	2298, 2875, 3082
AlwI	GGATC	6 cut(s)	336, 545, 656, 1399, 1916, 2213
AoxI	GGCC	8 cut(s)	200, 275, 720, 888, 2501, 2844, 2966, 3109
ApeKI	GCWGC	8 cut(s)	359, 371, 383, 400, 818, 1454, 1874, 2521
ApoI	RAATTY	4 cut(s)	1109, 1153, 2767, 2818
AsiGI	ACCGGT	1 cut(s)	76
Asp700I	GAANNNNTTC	2 cut(s)	1488, 1665
AspA2I	CCTAGG	1 cut(s)	317
AspLEI	GCGC	4 cut(s)	990, 1774, 2342, 2678
AspS9I	GGNCC	6 cut(s)	921, 1361, 1795, 2845, 2918, 2966
AsuC2I	CCSGG	2 cut(s)	346, 600
AsuHPI	GGTGA	9 cut(s)	167, 179, 614, 884, 1359, 1607, 1723, 1923, 2570
AsuII	TTCGAA	1 cut(s)	1669
AsuNHI	GCTAGC	1 cut(s)	28
AvaII	GGWCC	4 cut(s)	921, 1361, 1795, 2918
AvrII	CCTAGG	1 cut(s)	317
AxyI	CCTNAGG	2 cut(s)	192, 1896
BaeGI	GKGCMC	1 cut(s)	1885
BalI	TGGCCA	2 cut(s)	722, 890
BanI	GGYRCC	3 cut(s)	962, 2629, 2725
BanII	GRGCYC	2 cut(s)	1225, 1299
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BbsI	GAAGAC	4 cut(s)	629, 1422, 1584, 2027
Bbv12I	GWGCWC	2 cut(s)	615, 1225
BbvCI	CCTCAGC	2 cut(s)	879, 3039
BbvI	GCAGC	8 cut(s)	346, 383, 387, 395, 805, 1441, 1861, 2533
BccI	CCATC	8 cut(s)	18, 262, 299, 552, 943, 1599, 2646, 3106
BceAI	ACGGC	3 cut(s)	148, 1360, 2260
BcgI	CGANNNNNNTGC	2 cut(s)	2360, 2394
BciVI	GTATCC	1 cut(s)	51
BclI	TGATCA	1 cut(s)	2704
BcnI	CCSGG	2 cut(s)	346, 600
BcoDI	GTCTC	3 cut(s)	2298, 2875, 3082
BfaI	CTAG	5 cut(s)	29, 318, 1808, 2517, 2733
BfmI	CTRYAG	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	51
BglI	GCCNNNNNGGC	1 cut(s)	320
BlnI	CCTAGG	1 cut(s)	317
BmcAI	AGTACT	1 cut(s)	524
Bme18I	GGWCC	4 cut(s)	921, 1361, 1795, 2918
BmgBI	CACGTC	1 cut(s)	674
BmgT120I	GGNCC	6 cut(s)	921, 1361, 1795, 2845, 2918, 2966
BmiI	GGNNCC	6 cut(s)	923, 964, 2536, 2631, 2727, 3000
BmtI	GCTAGC	1 cut(s)	32
BoxI	GACNNNNGTC	1 cut(s)	1800
BpiI	GAAGAC	4 cut(s)	629, 1422, 1584, 2027
BplI	GAGNNNNNCTC	2 cut(s)	3079, 3111
BpmI	CTGGAG	4 cut(s)	873, 1079, 2286, 2553
Bpu10I	CCTNAGC	2 cut(s)	879, 3039
Bpu14I	TTCGAA	1 cut(s)	1669
BpuEI	CTTGAG	3 cut(s)	1508, 1775, 2736
BpuMI	CCSGG	2 cut(s)	346, 600
Bsa29I	ATCGAT	1 cut(s)	2167
BsaI	GGTCTC	3 cut(s)	2298, 2875, 3082
BsaJI	CCNNGG	7 cut(s)	278, 317, 717, 1798, 2477, 2903, 2994
BsaWI	WCCGGW	3 cut(s)	76, 103, 2289
BsaXI	ACNNNNNCTCC	2 cut(s)	2881, 2911
Bsc4I	CCNNNNNNNGG	8 cut(s)	605, 1897, 2264, 2289, 2390, 2722, 3016, 3062
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	5 cut(s)	114, 822, 904, 1062, 2927
Bse21I	CCTNAGG	2 cut(s)	192, 1896
Bse3DI	GCAATG	3 cut(s)	515, 676, 2617
BseCI	ATCGAT	1 cut(s)	2167
BseDI	CCNNGG	7 cut(s)	278, 317, 717, 1798, 2477, 2903, 2994
BseGI	GGATG	8 cut(s)	563, 700, 1003, 1610, 2131, 2244, 2746, 3098
BseLI	CCNNNNNNNGG	8 cut(s)	605, 1897, 2264, 2289, 2390, 2722, 3016, 3062
BseMI	GCAATG	3 cut(s)	515, 676, 2617
BseMII	CTCAG	6 cut(s)	183, 870, 1461, 1887, 2034, 3053
BseNI	ACTGG	5 cut(s)	114, 822, 904, 1062, 2927
BseRI	GAGGAG	4 cut(s)	422, 1296, 2090, 2512
BseSI	GKGCMC	1 cut(s)	1885
BseXI	GCAGC	8 cut(s)	346, 383, 387, 395, 805, 1441, 1861, 2533
BseYI	CCCAGC	1 cut(s)	3102
BsgI	GTGCAG	1 cut(s)	2424
Bsh1236I	CGCG	1 cut(s)	2676
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	8 cut(s)	202, 277, 722, 890, 2503, 2846, 2968, 3111
BshNI	GGYRCC	3 cut(s)	962, 2629, 2725
BshTI	ACCGGT	1 cut(s)	76
BshVI	ATCGAT	1 cut(s)	2167
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	615, 1225
BsiSI	CCGG	5 cut(s)	77, 104, 346, 599, 2290
BslFI	GGGAC	2 cut(s)	1818, 2724
BslI	CCNNNNNNNGG	8 cut(s)	605, 1897, 2264, 2289, 2390, 2722, 3016, 3062
BsmAI	GTCTC	3 cut(s)	2298, 2875, 3082
BsmFI	GGGAC	2 cut(s)	1818, 2724
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	8 cut(s)	202, 277, 722, 890, 2503, 2846, 2968, 3111
Bso31I	GGTCTC	3 cut(s)	2298, 2875, 3082
Bsp119I	TTCGAA	1 cut(s)	1669
Bsp1286I	GDGCHC	4 cut(s)	615, 1225, 1299, 1885
Bsp1407I	TGTACA	2 cut(s)	291, 2362
Bsp143I	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2704
Bsp19I	CCATGG	1 cut(s)	2477
BspACI	CCGC	9 cut(s)	32, 274, 349, 380, 1162, 2565, 2969, 3005, 3112
BspANI	GGCC	8 cut(s)	202, 277, 722, 890, 2503, 2846, 2968, 3111
BspCNI	CTCAG	6 cut(s)	184, 871, 1462, 1888, 2035, 3052
BspDI	ATCGAT	1 cut(s)	2167
BspFNI	CGCG	1 cut(s)	2676
BspHI	TCATGA	1 cut(s)	1492
BspLI	GGNNCC	6 cut(s)	923, 964, 2536, 2631, 2727, 3000
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	6 cut(s)	336, 545, 656, 1399, 1916, 2213
BspT104I	TTCGAA	1 cut(s)	1669
BspT107I	GGYRCC	3 cut(s)	962, 2629, 2725
BspTNI	GGTCTC	3 cut(s)	2298, 2875, 3082
BsrBI	CCGCTC	1 cut(s)	2567
BsrDI	GCAATG	3 cut(s)	515, 676, 2617
BsrFI	RCCGGY	1 cut(s)	76
BsrGI	TGTACA	2 cut(s)	291, 2362
BsrI	ACTGG	5 cut(s)	114, 822, 904, 1062, 2927
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	7 cut(s)	278, 317, 717, 1798, 2477, 2903, 2994
BssMI	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2704
BssT1I	CCWWGG	3 cut(s)	317, 717, 2477
Bst4CI	ACNGT	6 cut(s)	291, 1447, 1845, 2096, 2231, 2720
Bst6I	CTCTTC	4 cut(s)	1273, 1620, 1666, 3070
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstAUI	TGTACA	2 cut(s)	291, 2362
BstBI	TTCGAA	1 cut(s)	1669
BstC8I	GCNNGC	9 cut(s)	30, 714, 1144, 1148, 1242, 1423, 2086, 2439, 2634
BstDEI	CTNAG	9 cut(s)	192, 536, 879, 926, 1470, 1896, 2043, 2406, 3039
BstDSI	CCRYGG	1 cut(s)	2477
BstENI	CCTNNNNNAGG	1 cut(s)	1895
BstF5I	GGATG	8 cut(s)	563, 700, 1003, 1610, 2131, 2244, 2746, 3098
BstFNI	CGCG	1 cut(s)	2676
BstHHI	GCGC	4 cut(s)	990, 1774, 2342, 2678
BstKTI	GATC	8 cut(s)	344, 553, 664, 1394, 1789, 1924, 2221, 2707
BstMAI	GTCTC	3 cut(s)	2298, 2875, 3082
BstMBI	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2704
BstMCI	CGRYCG	1 cut(s)	108
BstNSI	RCATGY	2 cut(s)	241, 2597
BstPAI	GACNNNNGTC	1 cut(s)	1800
BstSFI	CTRYAG	1 cut(s)	19
BstSLI	GKGCMC	1 cut(s)	1885
BstUI	CGCG	1 cut(s)	2676
BstV1I	GCAGC	8 cut(s)	346, 383, 387, 395, 805, 1441, 1861, 2533
BstV2I	GAAGAC	4 cut(s)	629, 1422, 1584, 2027
BstX2I	RGATCY	2 cut(s)	341, 1391
BstYI	RGATCY	2 cut(s)	341, 1391
Bsu15I	ATCGAT	1 cut(s)	2167
Bsu36I	CCTNAGG	2 cut(s)	192, 1896
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	8 cut(s)	202, 277, 722, 890, 2503, 2846, 2968, 3111
BsuTUI	ATCGAT	1 cut(s)	2167
BtgI	CCRYGG	1 cut(s)	2477
BtgZI	GCGATG	1 cut(s)	751
BtrI	CACGTC	1 cut(s)	674
BtsCI	GGATG	8 cut(s)	563, 700, 1003, 1610, 2131, 2244, 2746, 3098
BtsI	GCAGTG	1 cut(s)	1754
BtsIMutI	CAGTG	7 cut(s)	239, 1055, 1456, 1692, 1754, 2101, 2236
Cac8I	GCNNGC	9 cut(s)	30, 714, 1144, 1148, 1242, 1423, 2086, 2439, 2634
CciI	TCATGA	1 cut(s)	1492
CfoI	GCGC	4 cut(s)	990, 1774, 2342, 2678
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	6 cut(s)	921, 1361, 1795, 2845, 2918, 2966
ClaI	ATCGAT	1 cut(s)	2167
CseI	GACGC	2 cut(s)	1247, 1298
Csp6I	GTAC	4 cut(s)	151, 292, 523, 2363
CspAI	ACCGGT	1 cut(s)	76
CviQI	GTAC	4 cut(s)	151, 292, 523, 2363
DdeI	CTNAG	9 cut(s)	192, 536, 879, 926, 1470, 1896, 2043, 2406, 3039
DpnI	GATC	8 cut(s)	343, 552, 663, 1393, 1788, 1923, 2220, 2706
DpnII	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2704
DraI	TTTAAA	1 cut(s)	1840
DrdI	GACNNNNNNGTC	1 cut(s)	2330
DseDI	GACNNNNNNGTC	1 cut(s)	2330
EaeI	YGGCCR	3 cut(s)	720, 888, 3109
Eam1104I	CTCTTC	4 cut(s)	1273, 1620, 1666, 3070
EarI	CTCTTC	4 cut(s)	1273, 1620, 1666, 3070
Ecl136II	GAGCTC	1 cut(s)	1223
Eco130I	CCWWGG	3 cut(s)	317, 717, 2477
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	2 cut(s)	1225, 1299
Eco31I	GGTCTC	3 cut(s)	2298, 2875, 3082
Eco32I	GATATC	1 cut(s)	1130
Eco47I	GGWCC	4 cut(s)	921, 1361, 1795, 2918
Eco53kI	GAGCTC	1 cut(s)	1223
Eco57I	CTGAAG	6 cut(s)	408, 1256, 1341, 1416, 1593, 1716
Eco81I	CCTNAGG	2 cut(s)	192, 1896
EcoICRI	GAGCTC	1 cut(s)	1223
EcoNI	CCTNNNNNAGG	1 cut(s)	1895
EcoO109I	RGGNCCY	3 cut(s)	1361, 1795, 2918
EcoRV	GATATC	1 cut(s)	1130
EcoT14I	CCWWGG	3 cut(s)	317, 717, 2477
EcoT38I	GRGCYC	2 cut(s)	1225, 1299
ErhI	CCWWGG	3 cut(s)	317, 717, 2477
FalI	AAGNNNNNCTT	2 cut(s)	2019, 2051
FaqI	GGGAC	2 cut(s)	1818, 2724
FauI	CCCGC	1 cut(s)	1155
FauNDI	CATATG	3 cut(s)	1047, 2506, 2647
FbaI	TGATCA	1 cut(s)	2704
FblI	GTMKAC	2 cut(s)	108, 2548
FokI	GGATG	8 cut(s)	570, 707, 1010, 1617, 2118, 2251, 2733, 3085
FriOI	GRGCYC	2 cut(s)	1225, 1299
FspBI	CTAG	5 cut(s)	29, 318, 1808, 2517, 2733
FspI	TGCGCA	1 cut(s)	2341
GlaI	GCGC	4 cut(s)	989, 1773, 2341, 2677
GsaI	CCCAGC	1 cut(s)	3106
GsuI	CTGGAG	4 cut(s)	873, 1079, 2286, 2553
HaeIII	GGCC	8 cut(s)	202, 277, 722, 890, 2503, 2846, 2968, 3111
HapII	CCGG	5 cut(s)	77, 104, 346, 599, 2290
HgaI	GACGC	2 cut(s)	1247, 1298
HhaI	GCGC	4 cut(s)	990, 1774, 2342, 2678
Hin6I	GCGC	4 cut(s)	988, 1772, 2340, 2676
HinP1I	GCGC	4 cut(s)	988, 1772, 2340, 2676
HincII	GTYRAC	2 cut(s)	109, 1805
HindII	GTYRAC	2 cut(s)	109, 1805
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	7 cut(s)	100, 331, 464, 955, 1063, 1313, 2462
HpaII	CCGG	5 cut(s)	77, 104, 346, 599, 2290
HphI	GGTGA	9 cut(s)	167, 179, 614, 884, 1359, 1607, 1723, 1923, 2570
Hpy166II	GTNNAC	6 cut(s)	109, 1598, 1805, 2174, 2549, 2591
Hpy8I	GTNNAC	6 cut(s)	109, 1598, 1805, 2174, 2549, 2591
Hpy99I	CGWCG	5 cut(s)	53, 56, 59, 92, 95
HpyAV	CCTTC	9 cut(s)	213, 599, 824, 841, 1374, 1691, 1724, 1901, 2228
HpyCH4III	ACNGT	6 cut(s)	291, 1447, 1845, 2096, 2231, 2720
HpyCH4IV	ACGT	4 cut(s)	93, 673, 1657, 2806
HpyF3I	CTNAG	9 cut(s)	192, 536, 879, 926, 1470, 1896, 2043, 2406, 3039
HpySE526I	ACGT	4 cut(s)	93, 673, 1657, 2806
HspAI	GCGC	4 cut(s)	988, 1772, 2340, 2676
Ksp22I	TGATCA	1 cut(s)	2704
Kzo9I	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2704
LmnI	GCTCC	4 cut(s)	610, 1168, 2534, 2902
Lsp1109I	GCAGC	8 cut(s)	346, 383, 387, 395, 805, 1441, 1861, 2533
MaeI	CTAG	5 cut(s)	29, 318, 1808, 2517, 2733
MaeII	ACGT	4 cut(s)	93, 673, 1657, 2806
MaeIII	GTNAC	4 cut(s)	1688, 2119, 2825, 2951
MalI	GATC	8 cut(s)	343, 552, 663, 1393, 1788, 1923, 2220, 2706
MbiI	CCGCTC	1 cut(s)	2567
MboI	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2704
MfeI	CAATTG	3 cut(s)	300, 510, 2177
MflI	RGATCY	2 cut(s)	341, 1391
MhlI	GDGCHC	4 cut(s)	615, 1225, 1299, 1885
MlsI	TGGCCA	2 cut(s)	722, 890
MluNI	TGGCCA	2 cut(s)	722, 890
MmeI	TCCRAC	2 cut(s)	1006, 1168
Mox20I	TGGCCA	2 cut(s)	722, 890
MroXI	GAANNNNTTC	2 cut(s)	1488, 1665
MscI	TGGCCA	2 cut(s)	722, 890
MslI	CAYNNNNRTG	2 cut(s)	1747, 2856
Msp20I	TGGCCA	2 cut(s)	722, 890
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	5 cut(s)	77, 104, 346, 599, 2290
MunI	CAATTG	3 cut(s)	300, 510, 2177
Mva1269I	GAATGC	1 cut(s)	448
MvnI	CGCG	1 cut(s)	2676
NciI	CCSGG	2 cut(s)	346, 600
NcoI	CCATGG	1 cut(s)	2477
NdeI	CATATG	3 cut(s)	1047, 2506, 2647
NdeII	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2704
NheI	GCTAGC	1 cut(s)	28
NlaIV	GGNNCC	6 cut(s)	923, 964, 2536, 2631, 2727, 3000
NmuCI	GTSAC	1 cut(s)	2825
NsbI	TGCGCA	1 cut(s)	2341
NspI	RCATGY	2 cut(s)	241, 2597
NspV	TTCGAA	1 cut(s)	1669
PagI	TCATGA	1 cut(s)	1492
PceI	AGGCCT	1 cut(s)	202
PciI	ACATGT	1 cut(s)	2593
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	1 cut(s)	448
PdmI	GAANNNNTTC	2 cut(s)	1488, 1665
PfeI	GAWTC	7 cut(s)	100, 331, 464, 955, 1063, 1313, 2462
PflMI	CCANNNNNTGG	4 cut(s)	2264, 2722, 3016, 3062
PfoI	TCCNGGA	3 cut(s)	481, 553, 2530
PinAI	ACCGGT	1 cut(s)	76
PpuMI	RGGWCCY	3 cut(s)	1361, 1795, 2918
PscI	ACATGT	1 cut(s)	2593
PshAI	GACNNNNGTC	1 cut(s)	1800
PsiI	TTATAA	1 cut(s)	2937
Psp124BI	GAGCTC	1 cut(s)	1225
Psp1406I	AACGTT	1 cut(s)	2806
Psp5II	RGGWCCY	3 cut(s)	1361, 1795, 2918
PspFI	CCCAGC	1 cut(s)	3102
PspN4I	GGNNCC	6 cut(s)	923, 964, 2536, 2631, 2727, 3000
PspPI	GGNCC	6 cut(s)	921, 1361, 1795, 2845, 2918, 2966
PspPPI	RGGWCCY	3 cut(s)	1361, 1795, 2918
PsuI	RGATCY	2 cut(s)	341, 1391
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	4 cut(s)	152, 293, 524, 2364
RsaNI	GTAC	4 cut(s)	151, 292, 523, 2363
RseI	CAYNNNNRTG	2 cut(s)	1747, 2856
SacI	GAGCTC	1 cut(s)	1225
SalI	GTCGAC	1 cut(s)	107
Sau3AI	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2704
Sau96I	GGNCC	6 cut(s)	921, 1361, 1795, 2845, 2918, 2966
ScaI	AGTACT	1 cut(s)	524
SduI	GDGCHC	4 cut(s)	615, 1225, 1299, 1885
SfcI	CTRYAG	1 cut(s)	19
SfuI	TTCGAA	1 cut(s)	1669
SinI	GGWCC	4 cut(s)	921, 1361, 1795, 2918
SmiMI	CAYNNNNRTG	2 cut(s)	1747, 2856
SmlI	CTYRAG	3 cut(s)	1523, 1790, 2751
SmoI	CTYRAG	3 cut(s)	1523, 1790, 2751
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	9 cut(s)	32, 274, 349, 380, 1162, 2565, 2969, 3005, 3112
SspI	AATATT	3 cut(s)	916, 935, 1209
SspMI	CTAG	5 cut(s)	29, 318, 1808, 2517, 2733
SstI	GAGCTC	1 cut(s)	1225
StuI	AGGCCT	1 cut(s)	202
StyI	CCWWGG	3 cut(s)	317, 717, 2477
TaaI	ACNGT	6 cut(s)	291, 1447, 1845, 2096, 2231, 2720
TaiI	ACGT	4 cut(s)	96, 676, 1660, 2809
TaqII	GACCGA	1 cut(s)	1790
TatI	WGTACW	3 cut(s)	291, 522, 2362
TauI	GCSGC	5 cut(s)	277, 383, 2567, 2971, 3114
TfiI	GAWTC	7 cut(s)	100, 331, 464, 955, 1063, 1313, 2462
TscAI	CASTG	7 cut(s)	239, 1062, 1456, 1699, 1754, 2101, 2236
TseFI	GTSAC	1 cut(s)	2825
TseI	GCWGC	8 cut(s)	359, 371, 383, 400, 818, 1454, 1874, 2521
Tsp45I	GTSAC	1 cut(s)	2825
TspGWI	ACGGA	3 cut(s)	859, 2021, 2087
TspRI	CASTG	7 cut(s)	239, 1062, 1456, 1699, 1754, 2101, 2236
Van91I	CCANNNNNTGG	4 cut(s)	2264, 2722, 3016, 3062
VpaK11BI	GGWCC	4 cut(s)	921, 1361, 1795, 2918
XagI	CCTNNNNNAGG	1 cut(s)	1895
XapI	RAATTY	4 cut(s)	1109, 1153, 2767, 2818
XceI	RCATGY	2 cut(s)	241, 2597
XmaJI	CCTAGG	1 cut(s)	317
XmiI	GTMKAC	2 cut(s)	108, 2548
XmnI	GAANNNNTTC	2 cut(s)	1488, 1665
XspI	CTAG	5 cut(s)	29, 318, 1808, 2517, 2733
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.