Rmu_sc0039467.1_g000001

5'-3' exoribonuclease

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039467.1
Physical Location & Seq
Forward (+)
1 .. 3142
3142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039467.1_g000001.1.cds

Sequence Viewer

Length: 1378 bp
gttttacccttaccattatgcgccctttgcttctgatctcaaggacctcggtgaactagatataagttttgaattgggcagtccctttaaaccgttcaatcagctgttaggggtttttcctgctgcaagtgcccatgcccttcctgaggcatacaggaagctgatgactgatccaaactcacctcttattgatttttaccctactgactttgaagtggatatgaatgggaaacgatttgcatggcagggtattgcaaaactccctttcattgatgaagtccgtcttctttctgaggttgaaaaacttgaacatacattaacggaggaggaatcacgtagaaacagtgtgatgtttgagatgctctttgttacatcttctcatcctctctctgtgtgcatatattctcttgacaatcgctgtaaacaattgacagacaaagaacgtgttgagtttaaggaacaaattgatcccaaatacagggatacatgcagtgaagggatgaacggctatctatctccatgtgctggagagccttgtcctcccgttttccgatctcctgttgaaagcatggaggatataatggacaaccaagtcatatgtgcaatatacagactaccagatgtacacgagcatataactcgaccaccagcaggggtcattttccctaagaagattgtgtcatcgggggatatgaagcctgcacctgttttgtggcatgaggattcagggaggaagccatggcatgacaattcggggaggaggccatatgaaagttctagacagcaccctcctggagccatttctggaagacagcttggcgatgccgctcatcgacttgttgttaatagtttacatgttaaggcaaacggcaatgggtatggcaatcagatggctgcccatcaaccatatgccgaacctccatattacccaccacgggcttcctacgcaagtaatggaagctatgatcagggacaccacagtatggcaccacctagaacattccagcatcctcaagtgcaacaccaaaattcctaccaccctccgaatagacatcattctcaacattatgaaagaaattctggtcactcgtactctcagtcggcccgtcatcagaatggtggaattgcttacccccagagaccaattacaccagctccaccaggggtcaatccaggtccttatccagttggttataacaactatcagagttaccaacaagcagggccgcctggttatcaaggcattgatgcgtgggttccaccgccccaaaatatgggcagagaatatggtcgtcctcagcaatctggaaacccgtactctggattggacaggagaggaaataggagaccacctccatcccagcatggccgcaagtag

Protein Analysis

458

Amino Acids

51.66

Weight (kDa)

7.17

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1195
AasI GACNNNNNNGTC 1 cut(s) 591
AccB1I GGYRCC 1 cut(s) 986
AccB7I CCANNNNNTGG 3 cut(s) 525, 983, 1274
AccBSI CCGCTC 1 cut(s) 828
AciI CCGC 4 cut(s) 826, 1227, 1263, 1370
AclWI GGATC 2 cut(s) 165, 462
AcoI YGGCCR 1 cut(s) 1367
AcsI RAATTY 2 cut(s) 1028, 1076
AfaI GTAC 3 cut(s) 625, 1092, 1317
AfiI CCNNNNNNNGG 8 cut(s) 146, 478, 525, 651, 935, 983, 1274, 1320
AflIII ACRYGT 2 cut(s) 443, 854
AgsI TTSAA 6 cut(s) 72, 98, 213, 300, 309, 564
AjnI CCWGG 4 cut(s) 791, 1160, 1172, 1229
AluBI AGCT 5 cut(s) 104, 161, 815, 961, 1155
AluI AGCT 5 cut(s) 104, 161, 815, 961, 1155
Alw26I GTCTC 2 cut(s) 1133, 1340
AlwI GGATC 2 cut(s) 165, 462
AoxI GGCC 4 cut(s) 762, 1102, 1224, 1367
ApeKI GCWGC 2 cut(s) 123, 894
ApoI RAATTY 2 cut(s) 1028, 1076
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 4 cut(s) 44, 1103, 1176, 1224
AsuHPI GGTGA 2 cut(s) 63, 172
AvaII GGWCC 2 cut(s) 44, 1176
AxyI CCTNAGG 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 134
BanI GGYRCC 1 cut(s) 986
BauI CACGAG 1 cut(s) 627
BbsI GAAGAC 2 cut(s) 276, 815
BbvCI CCTCAGC 1 cut(s) 1297
BbvI GCAGC 2 cut(s) 110, 881
BccI CCATC 3 cut(s) 884, 907, 1364
BceAI ACGGC 2 cut(s) 521, 884
BcgI CGANNNNNNTGC 2 cut(s) 621, 655
BciT130I CCWGG 4 cut(s) 793, 1162, 1174, 1231
BciVI GTATCC 1 cut(s) 476
BclI TGATCA 1 cut(s) 965
BcoDI GTCTC 2 cut(s) 1133, 1340
BfaI CTAG 3 cut(s) 57, 778, 994
BfuI GTATCC 1 cut(s) 476
BisI GCNGC 5 cut(s) 124, 826, 895, 1227, 1370
BlsI GCNGC 5 cut(s) 125, 827, 896, 1228, 1371
Bme1390I CCNGG 4 cut(s) 793, 1162, 1174, 1231
Bme18I GGWCC 2 cut(s) 44, 1176
BmgT120I GGNCC 4 cut(s) 44, 1103, 1176, 1224
BmiI GGNNCC 3 cut(s) 797, 988, 1258
BmrFI CCNGG 4 cut(s) 793, 1162, 1174, 1231
BmsI GCATC 4 cut(s) 349, 812, 1016, 1238
BpiI GAAGAC 2 cut(s) 276, 815
BplI GAGNNNNNCTC 2 cut(s) 1337, 1369
BpmI CTGGAG 2 cut(s) 547, 814
Bpu10I CCTNAGC 1 cut(s) 1297
BpuEI CTTGAG 2 cut(s) 24, 997
BsaAI YACGTR 1 cut(s) 336
BsaI GGTCTC 2 cut(s) 1133, 1340
BsaJI CCNNGG 4 cut(s) 47, 738, 933, 1161
BsaXI ACNNNNNCTCC 2 cut(s) 1139, 1169
Bsc4I CCNNNNNNNGG 8 cut(s) 146, 478, 525, 651, 935, 983, 1274, 1320
Bse1I ACTGG 1 cut(s) 1185
Bse21I CCTNAGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 878
BseBI CCWGG 4 cut(s) 793, 1162, 1174, 1231
BseDI CCNNGG 4 cut(s) 47, 738, 933, 1161
BseGI GGATG 4 cut(s) 380, 505, 1007, 1356
BseLI CCNNNNNNNGG 8 cut(s) 146, 478, 525, 651, 935, 983, 1274, 1320
BseMI GCAATG 1 cut(s) 878
BseMII CTCAG 4 cut(s) 136, 283, 1110, 1311
BseNI ACTGG 1 cut(s) 1185
BseRI GAGGAG 2 cut(s) 339, 773
BseSI GKGCMC 1 cut(s) 134
BseXI GCAGC 2 cut(s) 110, 881
BseYI CCCAGC 1 cut(s) 1360
BsgI GTGCAG 1 cut(s) 685
BshFI GGCC 4 cut(s) 764, 1104, 1226, 1369
BshNI GGYRCC 1 cut(s) 986
BslFI GGGAC 2 cut(s) 67, 985
BslI CCNNNNNNNGG 8 cut(s) 146, 478, 525, 651, 935, 983, 1274, 1320
BsmAI GTCTC 2 cut(s) 1133, 1340
BsmFI GGGAC 2 cut(s) 67, 985
BsnI GGCC 4 cut(s) 764, 1104, 1226, 1369
Bso31I GGTCTC 2 cut(s) 1133, 1340
Bsp1286I GDGCHC 1 cut(s) 134
Bsp1407I TGTACA 1 cut(s) 623
Bsp143I GATC 5 cut(s) 35, 170, 467, 552, 965
Bsp19I CCATGG 1 cut(s) 738
BspACI CCGC 4 cut(s) 826, 1227, 1263, 1370
BspANI GGCC 4 cut(s) 764, 1104, 1226, 1369
BspCNI CTCAG 4 cut(s) 137, 284, 1109, 1310
BspLI GGNNCC 3 cut(s) 797, 988, 1258
BspPI GGATC 2 cut(s) 165, 462
BspT107I GGYRCC 1 cut(s) 986
BspTNI GGTCTC 2 cut(s) 1133, 1340
BsrBI CCGCTC 1 cut(s) 828
BsrDI GCAATG 1 cut(s) 878
BsrGI TGTACA 1 cut(s) 623
BsrI ACTGG 1 cut(s) 1185
BssECI CCNNGG 4 cut(s) 47, 738, 933, 1161
BssMI GATC 5 cut(s) 35, 170, 467, 552, 965
BssSI CACGAG 1 cut(s) 627
BssT1I CCWWGG 1 cut(s) 738
Bst2BI CACGAG 1 cut(s) 627
Bst2UI CCWGG 4 cut(s) 793, 1162, 1174, 1231
Bst4CI ACNGT 3 cut(s) 94, 345, 981
BstAUI TGTACA 1 cut(s) 623
BstBAI YACGTR 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 700
BstDEI CTNAG 5 cut(s) 145, 292, 667, 1096, 1297
BstDSI CCRYGG 2 cut(s) 738, 933
BstENI CCTNNNNNAGG 1 cut(s) 144
BstF5I GGATG 4 cut(s) 380, 505, 1007, 1356
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 5 cut(s) 38, 173, 470, 555, 968
BstMAI GTCTC 2 cut(s) 1133, 1340
BstMBI GATC 5 cut(s) 35, 170, 467, 552, 965
BstMWI GCNNNNNNNGC 3 cut(s) 27, 129, 945
BstNI CCWGG 4 cut(s) 793, 1162, 1174, 1231
BstNSI RCATGY 2 cut(s) 490, 858
BstSCI CCNGG 4 cut(s) 791, 1160, 1172, 1229
BstSLI GKGCMC 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 110, 881
BstV2I GAAGAC 2 cut(s) 276, 815
Bsu36I CCTNAGG 1 cut(s) 145
BsuI GTATCC 1 cut(s) 476
BsuRI GGCC 4 cut(s) 764, 1104, 1226, 1369
BtgI CCRYGG 2 cut(s) 738, 933
BtgZI GCGATG 1 cut(s) 835
BtsCI GGATG 4 cut(s) 380, 505, 1007, 1356
BtsI GCAGTG 1 cut(s) 497
BtsIMutI CAGTG 2 cut(s) 350, 497
Cac8I GCNNGC 1 cut(s) 700
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 4 cut(s) 44, 1103, 1176, 1224
Csp6I GTAC 3 cut(s) 624, 1091, 1316
CviQI GTAC 3 cut(s) 624, 1091, 1316
DdeI CTNAG 5 cut(s) 145, 292, 667, 1096, 1297
DpnI GATC 5 cut(s) 37, 172, 469, 554, 967
DpnII GATC 5 cut(s) 35, 170, 467, 552, 965
DraI TTTAAA 1 cut(s) 89
DrdI GACNNNNNNGTC 1 cut(s) 591
DseDI GACNNNNNNGTC 1 cut(s) 591
EaeI YGGCCR 1 cut(s) 1367
Eco130I CCWWGG 1 cut(s) 738
Eco31I GGTCTC 2 cut(s) 1133, 1340
Eco47I GGWCC 2 cut(s) 44, 1176
Eco81I CCTNAGG 1 cut(s) 145
EcoNI CCTNNNNNAGG 1 cut(s) 144
EcoO109I RGGNCCY 2 cut(s) 44, 1176
EcoRII CCWGG 4 cut(s) 791, 1160, 1172, 1229
EcoT14I CCWWGG 1 cut(s) 738
ErhI CCWWGG 1 cut(s) 738
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FaqI GGGAC 2 cut(s) 67, 985
FauNDI CATATG 3 cut(s) 597, 767, 908
FbaI TGATCA 1 cut(s) 965
Fnu4HI GCNGC 5 cut(s) 124, 826, 895, 1227, 1370
FokI GGATG 4 cut(s) 367, 512, 994, 1343
Fsp4HI GCNGC 5 cut(s) 124, 826, 895, 1227, 1370
FspBI CTAG 3 cut(s) 57, 778, 994
GlaI GCGC 1 cut(s) 22
GluI GCNGC 5 cut(s) 124, 826, 895, 1227, 1370
GsaI CCCAGC 1 cut(s) 1364
GsuI CTGGAG 2 cut(s) 547, 814
HaeIII GGCC 4 cut(s) 764, 1104, 1226, 1369
HhaI GCGC 1 cut(s) 23
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HinfI GANTC 2 cut(s) 330, 723
HphI GGTGA 2 cut(s) 63, 172
Hpy166II GTNNAC 4 cut(s) 54, 423, 626, 852
Hpy188I TCNGA 7 cut(s) 35, 293, 552, 889, 1045, 1114, 1207
Hpy188III TCNNGA 6 cut(s) 144, 408, 778, 805, 1306, 1321
Hpy8I GTNNAC 4 cut(s) 54, 423, 626, 852
HpyAV CCTTC 2 cut(s) 150, 489
HpyCH4III ACNGT 3 cut(s) 94, 345, 981
HpyCH4IV ACGT 2 cut(s) 335, 443
HpyCH4V TGCA 8 cut(s) 126, 240, 255, 397, 490, 603, 702, 1019
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 129, 945
HpyF3I CTNAG 5 cut(s) 145, 292, 667, 1096, 1297
HpySE526I ACGT 2 cut(s) 335, 443
HspAI GCGC 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 965
Kzo9I GATC 5 cut(s) 35, 170, 467, 552, 965
LmnI GCTCC 2 cut(s) 795, 1160
Lsp1109I GCAGC 2 cut(s) 110, 881
LweI GCATC 4 cut(s) 349, 812, 1016, 1238
MaeI CTAG 3 cut(s) 57, 778, 994
MaeII ACGT 2 cut(s) 335, 443
MaeIII GTNAC 3 cut(s) 368, 1083, 1209
MalI GATC 5 cut(s) 37, 172, 469, 554, 967
MbiI CCGCTC 1 cut(s) 828
MboI GATC 5 cut(s) 35, 170, 467, 552, 965
MboII GAAGA 4 cut(s) 276, 367, 683, 820
MfeI CAATTG 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 8 cut(s) 72, 426, 463, 749, 1028, 1076, 1123, 1144
MseI TTAA 5 cut(s) 88, 318, 454, 844, 859
MslI CAYNNNNRTG 1 cut(s) 1114
MspA1I CMGCKG 1 cut(s) 104
MspR9I CCNGG 4 cut(s) 793, 1162, 1174, 1231
MunI CAATTG 1 cut(s) 426
MvaI CCWGG 4 cut(s) 793, 1162, 1174, 1231
MwoI GCNNNNNNNGC 3 cut(s) 27, 129, 945
NcoI CCATGG 1 cut(s) 738
NdeI CATATG 3 cut(s) 597, 767, 908
NdeII GATC 5 cut(s) 35, 170, 467, 552, 965
NlaIV GGNNCC 3 cut(s) 797, 988, 1258
NmuCI GTSAC 1 cut(s) 1083
NspI RCATGY 2 cut(s) 490, 858
PciI ACATGT 1 cut(s) 854
PfeI GAWTC 2 cut(s) 330, 723
PflMI CCANNNNNTGG 3 cut(s) 525, 983, 1274
PfoI TCCNGGA 1 cut(s) 791
PkrI GCNGC 5 cut(s) 125, 827, 896, 1228, 1371
Ppu21I YACGTR 1 cut(s) 336
PpuMI RGGWCCY 2 cut(s) 44, 1176
PscI ACATGT 1 cut(s) 854
PsiI TTATAA 1 cut(s) 1195
Psp5II RGGWCCY 2 cut(s) 44, 1176
Psp6I CCWGG 4 cut(s) 791, 1160, 1172, 1229
PspFI CCCAGC 1 cut(s) 1360
PspGI CCWGG 4 cut(s) 791, 1160, 1172, 1229
PspN4I GGNNCC 3 cut(s) 797, 988, 1258
PspPI GGNCC 4 cut(s) 44, 1103, 1176, 1224
PspPPI RGGWCCY 2 cut(s) 44, 1176
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 3 cut(s) 625, 1092, 1317
RsaNI GTAC 3 cut(s) 624, 1091, 1316
RseI CAYNNNNRTG 1 cut(s) 1114
SaqAI TTAA 5 cut(s) 88, 318, 454, 844, 859
SatI GCNGC 5 cut(s) 124, 826, 895, 1227, 1370
Sau3AI GATC 5 cut(s) 35, 170, 467, 552, 965
Sau96I GGNCC 4 cut(s) 44, 1103, 1176, 1224
ScrFI CCNGG 4 cut(s) 793, 1162, 1174, 1231
SduI GDGCHC 1 cut(s) 134
SfaNI GCATC 4 cut(s) 349, 812, 1016, 1238
SinI GGWCC 2 cut(s) 44, 1176
SmiMI CAYNNNNRTG 1 cut(s) 1114
SmlI CTYRAG 2 cut(s) 39, 1012
SmoI CTYRAG 2 cut(s) 39, 1012
Sse9I AATT 8 cut(s) 72, 426, 463, 749, 1028, 1076, 1123, 1144
SsiI CCGC 4 cut(s) 826, 1227, 1263, 1370
SspMI CTAG 3 cut(s) 57, 778, 994
StyD4I CCNGG 4 cut(s) 791, 1160, 1172, 1229
StyI CCWWGG 1 cut(s) 738
TaaI ACNGT 3 cut(s) 94, 345, 981
TaiI ACGT 2 cut(s) 338, 446
TaqI TCGA 2 cut(s) 641, 833
TasI AATT 8 cut(s) 72, 426, 463, 749, 1028, 1076, 1123, 1144
TatI WGTACW 1 cut(s) 623
TauI GCSGC 3 cut(s) 828, 1229, 1372
TfiI GAWTC 2 cut(s) 330, 723
Tru1I TTAA 5 cut(s) 88, 318, 454, 844, 859
Tru9I TTAA 5 cut(s) 88, 318, 454, 844, 859
TscAI CASTG 2 cut(s) 350, 497
TseFI GTSAC 1 cut(s) 1083
TseI GCWGC 2 cut(s) 123, 894
Tsp45I GTSAC 1 cut(s) 1083
TspDTI ATGAA 7 cut(s) 237, 257, 289, 516, 708, 784, 1084
TspGWI ACGGA 2 cut(s) 270, 336
TspRI CASTG 2 cut(s) 350, 497
Van91I CCANNNNNTGG 3 cut(s) 525, 983, 1274
VpaK11BI GGWCC 2 cut(s) 44, 1176
XagI CCTNNNNNAGG 1 cut(s) 144
XapI RAATTY 2 cut(s) 1028, 1076
XbaI TCTAGA 1 cut(s) 777
XceI RCATGY 2 cut(s) 490, 858
XspI CTAG 3 cut(s) 57, 778, 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.