Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG428700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2229 bp

ATGCTTGCCTTGGCCACCCATGAAGTTCATTTCTCCATTCTTCGAGAGGTTGTTTTCGTCGCTGGACAGCAGGACAAGTGCTTCCTGTGTGGTCAGGTGGGTCATTTAGCTGCCAGTTGTGAAGGAAAGGCAAAACGGAAGGCTGGAGAGCTTGATGAGAAAGGTGATGCCGAGGCTGTGGCCAAGAAGCCGTACCAGGGTGCAATCAACTTGCTTTTGGCTGTATATAAAAAGGAATTTAGGGGAATGGGGGGATATCTGACTAATGCAAGCAAGCCAAATTTGAGGCGGGTGGAGCATTTCATTCAGGCAGTTGGAAGTTATGAAGATAAAATATTCCAGAAAAGAGCTCAACTGCATCTGAAGCAAGCAGAAAGAATAAAGCGTCAAAAGGCACAAGCTCGAAGAGGAGATGACGCAGAGCCCCAAGTGCAACCAGATTCTTTAGTTGCAGTTAATCGGTTTCATGGTTCTCGTCTTGCTTCAGGTCCTTCACCTGTGCCGTTTCACCAATCTGGATCTGGTAGAGGAAATCCTCGAAAGGTTGCACGCTTGTCTTCAGAGGCATCAACTGTCGGTGCTGCTATTGTTGAAGCTGAGAACATTCTTGAAGATGTTCATGAAAACAAAGAAGATTTGAAAATAAAGCTCAAGGAGGTTCTTCGTGAGAAATCTGATGCTTTTAACTCTAAAAATCCTGAAGAAGACAAGGTTAAATTGGGTGAACCTGGATGGAGAGAGAGGTATTATGAAGAGAAGTTTAATGCAAAAACTCCCGAAGAACGTGAAGCAATTCGAAGAGATGTTGTTTTGCGTTACACTGAAGGTCTGTGTTGGGTGATGCACTATTATTATGAAGGGGTTTGTTCATGGCAGTGGTTTTACCCTTACCATTATGCGCCCTTTGCTTCTGATCTCAAGGACCTCGGTCAACTAGATATAAGTTTTGAATTGGGCAGTCCCTTTAAACCGTTCAATCAGCTGTTAGGGGTTTTTCCTGCTGCAAGTGCCCATGCCCTTCCTGAGGCATACAGGAAGCTGATGACTGATCCAAACTCACCTCTTATTGATTTTTACCCTACTGACTTTGAAGTGGATATGAATGGGAAACGATTTGCATGGCAGGGTATTGCAAAACTCCCTTTCATTGATGAAGTCCGTCTTCTTTCTGAGGTTGAAAAACTTGAACATACATTAACGGAGGAGGAATCACGCAGAAACAGTGTGATGTTTGAGATGCTCTTTGTTACATCTTCTCATCCTCTCTCTGTGTGCATATATTCTCTTGACAATCGCTGTAAACAATTGACAGACAAAGAGCGTGTTGAGTTTAAGGAACAAATTGATCCCAAATACAGTGAAGGGATGAACGGCTATCTATCTCCATGTGCTGGAGAGCCGTGTCCTCCCGTTTTCCGATCTCCTGTTGAAAGCATGGAGGATATAATGGACAACCAAGTCATACTACCAGATGTACACGAGCATATAACTCGACCACCAGCAGGGGTCATTTTCCCTAAGAAGATTGTGTCATCGGGGGATATGAAGCCTGCACCTGTTTTGTGGCATGAGGATTCAGGGAGGAAGCCATGGCATGACAATTCGGGGAGGAGGCCATATGAAAGTTCTAGACAGCACCCTCCTGGAGCCATTTCTGGAAGACAGCTTGGCGATGCCGCTCATCGACTTGTTGTCAATAGTTTACATGTTAAGGCAAACAGCAATGGGTATGGCAATCAGATGCCTGCCCATCAACCATATGCCGAACCTCCATATTACCCACCACGGGCTTCGTACGCAAGTAATGGAAGCTATGATCAGGGACACCACAGTATGGCACCACCTAGAACATTCCAGCATCCTCAAGTGCAACACCAAAATTCCTACCACCCTCCGAATAGACCTCATTCTCAACATTATGAAAGAAATTCTGGTCACTCATACTATCAGTCGGCCCGTCATCAGAATGGTGGAATTGCTTACCCCCAGAGACCAATTACACCAGCTCCACCAGGGGTCAATCCAGGTCCTTATCCAGTTGGTTATAACAACTATCAGAGTTACCAACAAGCAGGGCCGCCTGGTTATCAAGGCATTGATGCCTGGGTTCCACCGCCCCAAAATATGGGCAGAGGATATGGTCGTCCTCAGCAATCTGGAAACCCGTACTCTGGATTGGACAGGAGAGGAAATAGGAGACCACCTCCATCCCAGCATGGCCGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

742

Amino Acids

83.73

Weight (kDa)

8.55

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_M	PF17846	66 - 515	2.2e-134	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2046
AasI	GACNNNNNNGTC	1 cut(s)	1457
AccB1I	GGYRCC	1 cut(s)	1837
AccB7I	CCANNNNNTGG	3 cut(s)	1391, 1834, 2125
AccBSI	CCGCTC	1 cut(s)	1679
AciI	CCGC	5 cut(s)	289, 1677, 2078, 2114, 2221
AclWI	GGATC	3 cut(s)	526, 1043, 1340
AcoI	YGGCCR	3 cut(s)	12, 180, 2218
AcsI	RAATTY	4 cut(s)	236, 280, 1879, 1927
AcuI	CTGAAG	5 cut(s)	383, 468, 543, 720, 843
AfaI	GTAC	4 cut(s)	194, 1476, 1796, 2168
AfiI	CCNNNNNNNGG	8 cut(s)	197, 1024, 1391, 1502, 1786, 1834, 2125, 2171
AflIII	ACRYGT	1 cut(s)	1705
AgsI	TTSAA	9 cut(s)	593, 611, 640, 950, 976, 1091, 1178, 1187, 1430
AhdI	GACNNNNNGTC	1 cut(s)	1691
AjnI	CCWGG	7 cut(s)	195, 727, 1642, 2011, 2023, 2080, 2102
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	2 cut(s)	1984, 2191
AlwI	GGATC	3 cut(s)	526, 1043, 1340
AoxI	GGCC	6 cut(s)	12, 180, 1613, 1953, 2075, 2218
ApeKI	GCWGC	3 cut(s)	110, 581, 1001
ApoI	RAATTY	4 cut(s)	236, 280, 1879, 1927
Asp700I	GAANNNNTTC	2 cut(s)	615, 792
AspLEI	GCGC	1 cut(s)	901
AspS9I	GGNCC	5 cut(s)	488, 922, 1954, 2027, 2075
AsuHPI	GGTGA	6 cut(s)	176, 486, 500, 734, 850, 1050
AsuII	TTCGAA	1 cut(s)	796
AvaII	GGWCC	3 cut(s)	488, 922, 2027
AxyI	CCTNAGG	1 cut(s)	1023
BaeGI	GKGCMC	1 cut(s)	1012
BalI	TGGCCA	2 cut(s)	14, 182
BanI	GGYRCC	1 cut(s)	1837
BanII	GRGCYC	2 cut(s)	352, 426
BauI	CACGAG	1 cut(s)	1478
BbsI	GAAGAC	4 cut(s)	549, 711, 1154, 1666
Bbv12I	GWGCWC	1 cut(s)	352
BbvCI	CCTCAGC	1 cut(s)	2148
BbvI	GCAGC	3 cut(s)	97, 568, 988
BccI	CCATC	3 cut(s)	726, 1758, 2215
BceAI	ACGGC	4 cut(s)	175, 487, 1384, 1387
BcgI	CGANNNNNNTGC	2 cut(s)	1472, 1506
BciT130I	CCWGG	7 cut(s)	197, 729, 1644, 2013, 2025, 2082, 2104
BclI	TGATCA	1 cut(s)	1816
BcoDI	GTCTC	2 cut(s)	1984, 2191
BfaI	CTAG	3 cut(s)	935, 1629, 1845
BisI	GCNGC	6 cut(s)	111, 582, 1002, 1677, 2078, 2221
BlsI	GCNGC	6 cut(s)	112, 583, 1003, 1678, 2079, 2222
Bme1390I	CCNGG	7 cut(s)	197, 729, 1644, 2013, 2025, 2082, 2104
Bme18I	GGWCC	3 cut(s)	488, 922, 2027
BmeRI	GACNNNNNGTC	1 cut(s)	1691
BmgT120I	GGNCC	5 cut(s)	488, 922, 1954, 2027, 2075
BmiI	GGNNCC	3 cut(s)	1648, 1839, 2109
BmrFI	CCNGG	7 cut(s)	197, 729, 1644, 2013, 2025, 2082, 2104
BoxI	GACNNNNGTC	1 cut(s)	927
BpiI	GAAGAC	4 cut(s)	549, 711, 1154, 1666
BplI	GAGNNNNNCTC	2 cut(s)	2188, 2220
BpmI	CTGGAG	3 cut(s)	165, 1413, 1665
Bpu10I	CCTNAGC	1 cut(s)	2148
Bpu14I	TTCGAA	1 cut(s)	796
BpuEI	CTTGAG	3 cut(s)	635, 902, 1848
BsaI	GGTCTC	2 cut(s)	1984, 2191
BsaJI	CCNNGG	8 cut(s)	9, 171, 196, 925, 1589, 1784, 2012, 2103
BsaXI	ACNNNNNCTCC	2 cut(s)	1990, 2020
Bsc4I	CCNNNNNNNGG	8 cut(s)	197, 1024, 1391, 1502, 1786, 1834, 2125, 2171
Bse1I	ACTGG	2 cut(s)	114, 2036
Bse21I	CCTNAGG	1 cut(s)	1023
Bse3DI	GCAATG	1 cut(s)	1729
BseBI	CCWGG	7 cut(s)	197, 729, 1644, 2013, 2025, 2082, 2104
BseDI	CCNNGG	8 cut(s)	9, 171, 196, 925, 1589, 1784, 2012, 2103
BseGI	GGATG	5 cut(s)	737, 1258, 1371, 1858, 2207
BseLI	CCNNNNNNNGG	8 cut(s)	197, 1024, 1391, 1502, 1786, 1834, 2125, 2171
BseMI	GCAATG	1 cut(s)	1729
BseMII	CTCAG	4 cut(s)	588, 1014, 1161, 2162
BseNI	ACTGG	2 cut(s)	114, 2036
BseRI	GAGGAG	3 cut(s)	423, 1217, 1624
BseSI	GKGCMC	1 cut(s)	1012
BseXI	GCAGC	3 cut(s)	97, 568, 988
BseYI	CCCAGC	1 cut(s)	2211
BsgI	GTGCAG	1 cut(s)	1536
BshFI	GGCC	6 cut(s)	14, 182, 1615, 1955, 2077, 2220
BshNI	GGYRCC	1 cut(s)	1837
BsiHKAI	GWGCWC	1 cut(s)	352
BsiWI	CGTACG	1 cut(s)	1794
BslFI	GGGAC	2 cut(s)	945, 1836
BslI	CCNNNNNNNGG	8 cut(s)	197, 1024, 1391, 1502, 1786, 1834, 2125, 2171
BsmAI	GTCTC	2 cut(s)	1984, 2191
BsmFI	GGGAC	2 cut(s)	945, 1836
BsnI	GGCC	6 cut(s)	14, 182, 1615, 1955, 2077, 2220
Bso31I	GGTCTC	2 cut(s)	1984, 2191
Bsp119I	TTCGAA	1 cut(s)	796
Bsp1286I	GDGCHC	3 cut(s)	352, 426, 1012
Bsp1407I	TGTACA	1 cut(s)	1474
Bsp143I	GATC	6 cut(s)	518, 913, 1048, 1345, 1418, 1816
Bsp19I	CCATGG	1 cut(s)	1589
BspACI	CCGC	5 cut(s)	289, 1677, 2078, 2114, 2221
BspANI	GGCC	6 cut(s)	14, 182, 1615, 1955, 2077, 2220
BspCNI	CTCAG	4 cut(s)	589, 1015, 1162, 2161
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	3 cut(s)	1648, 1839, 2109
BspPI	GGATC	3 cut(s)	526, 1043, 1340
BspT104I	TTCGAA	1 cut(s)	796
BspT107I	GGYRCC	1 cut(s)	1837
BspTNI	GGTCTC	2 cut(s)	1984, 2191
BsrBI	CCGCTC	1 cut(s)	1679
BsrDI	GCAATG	1 cut(s)	1729
BsrGI	TGTACA	1 cut(s)	1474
BsrI	ACTGG	2 cut(s)	114, 2036
BssECI	CCNNGG	8 cut(s)	9, 171, 196, 925, 1589, 1784, 2012, 2103
BssMI	GATC	6 cut(s)	518, 913, 1048, 1345, 1418, 1816
BssSI	CACGAG	1 cut(s)	1478
BssT1I	CCWWGG	2 cut(s)	9, 1589
Bst2BI	CACGAG	1 cut(s)	1478
Bst2UI	CCWGG	7 cut(s)	197, 729, 1644, 2013, 2025, 2082, 2104
Bst4CI	ACNGT	5 cut(s)	574, 972, 1223, 1358, 1832
Bst6I	CTCTTC	3 cut(s)	400, 747, 793
BstAUI	TGTACA	1 cut(s)	1474
BstBI	TTCGAA	1 cut(s)	796
BstC8I	GCNNGC	7 cut(s)	6, 271, 275, 369, 550, 1551, 1746
BstDEI	CTNAG	5 cut(s)	597, 1023, 1170, 1518, 2148
BstDSI	CCRYGG	2 cut(s)	1589, 1784
BstENI	CCTNNNNNAGG	1 cut(s)	1022
BstF5I	GGATG	5 cut(s)	737, 1258, 1371, 1858, 2207
BstHHI	GCGC	1 cut(s)	901
BstKTI	GATC	6 cut(s)	521, 916, 1051, 1348, 1421, 1819
BstMAI	GTCTC	2 cut(s)	1984, 2191
BstMBI	GATC	6 cut(s)	518, 913, 1048, 1345, 1418, 1816
BstMWI	GCNNNNNNNGC	6 cut(s)	295, 364, 430, 905, 1007, 1796
BstNI	CCWGG	7 cut(s)	197, 729, 1644, 2013, 2025, 2082, 2104
BstNSI	RCATGY	1 cut(s)	1709
BstPAI	GACNNNNGTC	1 cut(s)	927
BstSCI	CCNGG	7 cut(s)	195, 727, 1642, 2011, 2023, 2080, 2102
BstSLI	GKGCMC	1 cut(s)	1012
BstV1I	GCAGC	3 cut(s)	97, 568, 988
BstV2I	GAAGAC	4 cut(s)	549, 711, 1154, 1666
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
Bsu36I	CCTNAGG	1 cut(s)	1023
BsuRI	GGCC	6 cut(s)	14, 182, 1615, 1955, 2077, 2220
BtgI	CCRYGG	2 cut(s)	1589, 1784
BtgZI	GCGATG	1 cut(s)	1686
BtsCI	GGATG	5 cut(s)	737, 1258, 1371, 1858, 2207
BtsI	GCAGTG	1 cut(s)	881
BtsIMutI	CAGTG	4 cut(s)	819, 881, 1228, 1363
Cac8I	GCNNGC	7 cut(s)	6, 271, 275, 369, 550, 1551, 1746
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	1 cut(s)	901
Cfr13I	GGNCC	5 cut(s)	488, 922, 1954, 2027, 2075
CseI	GACGC	2 cut(s)	374, 425
Csp6I	GTAC	4 cut(s)	193, 1475, 1795, 2167
CviQI	GTAC	4 cut(s)	193, 1475, 1795, 2167
DdeI	CTNAG	5 cut(s)	597, 1023, 1170, 1518, 2148
DpnI	GATC	6 cut(s)	520, 915, 1050, 1347, 1420, 1818
DpnII	GATC	6 cut(s)	518, 913, 1048, 1345, 1418, 1816
DraI	TTTAAA	1 cut(s)	967
DrdI	GACNNNNNNGTC	1 cut(s)	1457
DriI	GACNNNNNGTC	1 cut(s)	1691
DseDI	GACNNNNNNGTC	1 cut(s)	1457
EaeI	YGGCCR	3 cut(s)	12, 180, 2218
Eam1104I	CTCTTC	3 cut(s)	400, 747, 793
Eam1105I	GACNNNNNGTC	1 cut(s)	1691
EarI	CTCTTC	3 cut(s)	400, 747, 793
Ecl136II	GAGCTC	1 cut(s)	350
Eco130I	CCWWGG	2 cut(s)	9, 1589
Eco24I	GRGCYC	2 cut(s)	352, 426
Eco31I	GGTCTC	2 cut(s)	1984, 2191
Eco32I	GATATC	1 cut(s)	257
Eco47I	GGWCC	3 cut(s)	488, 922, 2027
Eco53kI	GAGCTC	1 cut(s)	350
Eco57I	CTGAAG	5 cut(s)	383, 468, 543, 720, 843
Eco81I	CCTNAGG	1 cut(s)	1023
EcoICRI	GAGCTC	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	1022
EcoO109I	RGGNCCY	3 cut(s)	488, 922, 2027
EcoRII	CCWGG	7 cut(s)	195, 727, 1642, 2011, 2023, 2080, 2102
EcoRV	GATATC	1 cut(s)	257
EcoT14I	CCWWGG	2 cut(s)	9, 1589
EcoT38I	GRGCYC	2 cut(s)	352, 426
ErhI	CCWWGG	2 cut(s)	9, 1589
FalI	AAGNNNNNCTT	2 cut(s)	1146, 1178
FaqI	GGGAC	2 cut(s)	945, 1836
FauI	CCCGC	1 cut(s)	282
FauNDI	CATATG	2 cut(s)	1618, 1759
FbaI	TGATCA	1 cut(s)	1816
Fnu4HI	GCNGC	6 cut(s)	111, 582, 1002, 1677, 2078, 2221
FokI	GGATG	5 cut(s)	744, 1245, 1378, 1845, 2194
FriOI	GRGCYC	2 cut(s)	352, 426
Fsp4HI	GCNGC	6 cut(s)	111, 582, 1002, 1677, 2078, 2221
FspBI	CTAG	3 cut(s)	935, 1629, 1845
GlaI	GCGC	1 cut(s)	900
GluI	GCNGC	6 cut(s)	111, 582, 1002, 1677, 2078, 2221
GsaI	CCCAGC	1 cut(s)	2215
GsuI	CTGGAG	3 cut(s)	165, 1413, 1665
HaeIII	GGCC	6 cut(s)	14, 182, 1615, 1955, 2077, 2220
HgaI	GACGC	2 cut(s)	374, 425
HhaI	GCGC	1 cut(s)	901
Hin6I	GCGC	1 cut(s)	899
HinP1I	GCGC	1 cut(s)	899
HincII	GTYRAC	1 cut(s)	932
HindII	GTYRAC	1 cut(s)	932
HinfI	GANTC	3 cut(s)	440, 1208, 1574
HphI	GGTGA	6 cut(s)	176, 486, 500, 734, 850, 1050
Hpy166II	GTNNAC	5 cut(s)	725, 932, 1301, 1477, 1703
Hpy8I	GTNNAC	5 cut(s)	725, 932, 1301, 1477, 1703
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	7 cut(s)	116, 133, 501, 818, 851, 1028, 1355
HpyCH4III	ACNGT	5 cut(s)	574, 972, 1223, 1358, 1832
HpyCH4IV	ACGT	1 cut(s)	784
HpyF10VI	GCNNNNNNNGC	6 cut(s)	295, 364, 430, 905, 1007, 1796
HpyF3I	CTNAG	5 cut(s)	597, 1023, 1170, 1518, 2148
HpySE526I	ACGT	1 cut(s)	784
HspAI	GCGC	1 cut(s)	899
Ksp22I	TGATCA	1 cut(s)	1816
Kzo9I	GATC	6 cut(s)	518, 913, 1048, 1345, 1418, 1816
LmnI	GCTCC	3 cut(s)	295, 1646, 2011
Lsp1109I	GCAGC	3 cut(s)	97, 568, 988
MaeI	CTAG	3 cut(s)	935, 1629, 1845
MaeII	ACGT	1 cut(s)	784
MaeIII	GTNAC	4 cut(s)	815, 1246, 1934, 2060
MalI	GATC	6 cut(s)	520, 915, 1050, 1347, 1420, 1818
MbiI	CCGCTC	1 cut(s)	1679
MboI	GATC	6 cut(s)	518, 913, 1048, 1345, 1418, 1816
MfeI	CAATTG	1 cut(s)	1304
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	3 cut(s)	352, 426, 1012
MlsI	TGGCCA	2 cut(s)	14, 182
MluNI	TGGCCA	2 cut(s)	14, 182
MmeI	TCCRAC	1 cut(s)	295
Mox20I	TGGCCA	2 cut(s)	14, 182
MroXI	GAANNNNTTC	2 cut(s)	615, 792
MscI	TGGCCA	2 cut(s)	14, 182
MseI	TTAA	8 cut(s)	456, 684, 714, 762, 966, 1196, 1332, 1710
MslI	CAYNNNNRTG	2 cut(s)	874, 1965
Msp20I	TGGCCA	2 cut(s)	14, 182
MspA1I	CMGCKG	1 cut(s)	982
MspR9I	CCNGG	7 cut(s)	197, 729, 1644, 2013, 2025, 2082, 2104
MunI	CAATTG	1 cut(s)	1304
MvaI	CCWGG	7 cut(s)	197, 729, 1644, 2013, 2025, 2082, 2104
MwoI	GCNNNNNNNGC	6 cut(s)	295, 364, 430, 905, 1007, 1796
NcoI	CCATGG	1 cut(s)	1589
NdeI	CATATG	2 cut(s)	1618, 1759
NdeII	GATC	6 cut(s)	518, 913, 1048, 1345, 1418, 1816
NlaIV	GGNNCC	3 cut(s)	1648, 1839, 2109
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	1934
NspI	RCATGY	1 cut(s)	1709
NspV	TTCGAA	1 cut(s)	796
PagI	TCATGA	1 cut(s)	619
PciI	ACATGT	1 cut(s)	1705
PdmI	GAANNNNTTC	2 cut(s)	615, 792
PfeI	GAWTC	3 cut(s)	440, 1208, 1574
Pfl23II	CGTACG	1 cut(s)	1794
PflMI	CCANNNNNTGG	3 cut(s)	1391, 1834, 2125
PfoI	TCCNGGA	1 cut(s)	1642
PkrI	GCNGC	6 cut(s)	112, 583, 1003, 1678, 2079, 2222
PpuMI	RGGWCCY	3 cut(s)	488, 922, 2027
PscI	ACATGT	1 cut(s)	1705
PshAI	GACNNNNGTC	1 cut(s)	927
PsiI	TTATAA	1 cut(s)	2046
Psp124BI	GAGCTC	1 cut(s)	352
Psp5II	RGGWCCY	3 cut(s)	488, 922, 2027
Psp6I	CCWGG	7 cut(s)	195, 727, 1642, 2011, 2023, 2080, 2102
PspFI	CCCAGC	1 cut(s)	2211
PspGI	CCWGG	7 cut(s)	195, 727, 1642, 2011, 2023, 2080, 2102
PspLI	CGTACG	1 cut(s)	1794
PspN4I	GGNNCC	3 cut(s)	1648, 1839, 2109
PspPI	GGNCC	5 cut(s)	488, 922, 1954, 2027, 2075
PspPPI	RGGWCCY	3 cut(s)	488, 922, 2027
PsuI	RGATCY	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	982
RsaI	GTAC	4 cut(s)	194, 1476, 1796, 2168
RsaNI	GTAC	4 cut(s)	193, 1475, 1795, 2167
RseI	CAYNNNNRTG	2 cut(s)	874, 1965
SacI	GAGCTC	1 cut(s)	352
SaqAI	TTAA	8 cut(s)	456, 684, 714, 762, 966, 1196, 1332, 1710
SatI	GCNGC	6 cut(s)	111, 582, 1002, 1677, 2078, 2221
Sau3AI	GATC	6 cut(s)	518, 913, 1048, 1345, 1418, 1816
Sau96I	GGNCC	5 cut(s)	488, 922, 1954, 2027, 2075
ScrFI	CCNGG	7 cut(s)	197, 729, 1644, 2013, 2025, 2082, 2104
SduI	GDGCHC	3 cut(s)	352, 426, 1012
SfuI	TTCGAA	1 cut(s)	796
SinI	GGWCC	3 cut(s)	488, 922, 2027
SmiMI	CAYNNNNRTG	2 cut(s)	874, 1965
SmlI	CTYRAG	3 cut(s)	650, 917, 1863
SmoI	CTYRAG	3 cut(s)	650, 917, 1863
SsiI	CCGC	5 cut(s)	289, 1677, 2078, 2114, 2221
SspI	AATATT	1 cut(s)	336
SspMI	CTAG	3 cut(s)	935, 1629, 1845
SstI	GAGCTC	1 cut(s)	352
StyD4I	CCNGG	7 cut(s)	195, 727, 1642, 2011, 2023, 2080, 2102
StyI	CCWWGG	2 cut(s)	9, 1589
TaaI	ACNGT	5 cut(s)	574, 972, 1223, 1358, 1832
TaiI	ACGT	1 cut(s)	787
TaqI	TCGA	6 cut(s)	43, 403, 538, 796, 1492, 1684
TaqII	GACCGA	1 cut(s)	917
TatI	WGTACW	1 cut(s)	1474
TauI	GCSGC	3 cut(s)	1679, 2080, 2223
TfiI	GAWTC	3 cut(s)	440, 1208, 1574
Tru1I	TTAA	8 cut(s)	456, 684, 714, 762, 966, 1196, 1332, 1710
Tru9I	TTAA	8 cut(s)	456, 684, 714, 762, 966, 1196, 1332, 1710
TscAI	CASTG	4 cut(s)	826, 881, 1228, 1363
TseFI	GTSAC	1 cut(s)	1934
TseI	GCWGC	3 cut(s)	110, 581, 1001
Tsp45I	GTSAC	1 cut(s)	1934
TspGWI	ACGGA	3 cut(s)	151, 1148, 1214
TspRI	CASTG	4 cut(s)	826, 881, 1228, 1363
Van91I	CCANNNNNTGG	3 cut(s)	1391, 1834, 2125
VpaK11BI	GGWCC	3 cut(s)	488, 922, 2027
XagI	CCTNNNNNAGG	1 cut(s)	1022
XapI	RAATTY	4 cut(s)	236, 280, 1879, 1927
XbaI	TCTAGA	1 cut(s)	1628
XceI	RCATGY	1 cut(s)	1709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	518
XmnI	GAANNNNTTC	2 cut(s)	615, 792
XspI	CTAG	3 cut(s)	935, 1629, 1845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.