Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Reverse (-)

27924384 .. 27933622

Gene Structure 9239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38700.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3147 bp

ATGGGAGTTCCGGCGTTCTACAGATGGCTGGCGGAGAAGTACCCGCTCGTCGTCGTCGACGTGGTGGAAGAAGAGCCGGTTGTAATCGACGACGTTTCGATTCCGGTCGACACCAGTAAGCCAAACCCTAACGGCGAGTATGATAATCTCTATCTCGATATGAATGGGATTATTCACCCCTGTTTTCACCCCGAGGATAGGCCTTCGCCGACTACGTTTGATGAGGTGTTTCAGTGCATGTTTGACTACATTGATAGGCTTTTTGTGATGGTGCGGCCGAGGAAGCTATTATACATGGCCATTGATGGTGTTGCCCCCAGGGCGAAAATGAATCAACAGAGATCACGGCGGTTTAGAGCTGCTAAAGATGCAGCAGATGCGGCAGCTGAAGAAGAAAGGCTACGTGAAGAGTTTGAAATGGAGGGGAGAAAGCTTCCACCCAAACTGCATTCACAAACTTTTGATTCCAATGTCATTACTCCTGGAACTCCATTTATGGGTGTTTTGTCGATTGCATTGCAGTACTATATTCATCTGAGATTAAATAACGATCCTGGATGGAAAAATGTTAAGGTTATTCTATCTGATGCAAATGTTCCGGGTGAAGGGGAGCACAAGGTTATGTCATATATTCGTCTTCAAAGAAATCTTCCTGGTTATGATCCAAATACACGTCATTGCCTGTATGGTTTGGATGCTGATTTAATTATGCTTGCCTTGGCCACCCATGAAGTTCATTTCTCTATTCTTCGAGAGGTTGTTTTCGTTGCTGGACAGTCGGACAAGTGCTTCCTGTGTGGTCAGGTGGGTCATTTAGCCGCAAATTGTGAAGGAAAGGCTAAACGGAAGCCTGGAGAACTTGATGAGAAAGGTGATACTGTGGCTGTGGCCAAAAAGCCGTACCAGTTTCTTAATATTTGGACTCTTAGAGAATATTTGGAATACGAGATGCGGATGCCAGCTGGCCCATTTGAGATTGATATTGAGCGCATTGCGGATGATTTTATATTCCTCTGTTTCTTTGTCGGAAATGATTTCTTACCTCATATGCCTACATTGGAGATTCGGGAGGGTGCAATCAACTTGCTTTTGGCTGTATATAAAAAGGAATTTAGGGCTATGGGCGGATATCTGACTGATGCAAGCAAGCCAAATTTGAGCCGCGTGGAGCATTTCATTCAGGCAGTTGGATGTTATGAAGATAAAATATTCCAGAAAAGAGCTCAGCTGCATCTGAAGCAAGCAGAAAGAATAAAGCGTCAAAAGGCACAAACTCGAAGAGGCGATGATGCGCAGCCCCAAGTGCAACCAGATTCTTTAGTTGCAGTCAATCGATTTCATGGTTCTCGTCTTGCTTCAGGTCCTTCACCTGTGCCGTTTCAACAATCTAGATCTGGTAGAGGAAATCCTCAAAAGGTTCCGCGCTTGTCTTCAGAGGCATCAACTGTCGGTGCTGCTATTGTTGAAGCTGAGAACATTCTTGAAGATGTTGATGAAAACAAAGAAGATTTGAAATTAAAGCTCAAAGAGGTTCTTCGTGAGAAATCTGATGCTTTTAACTCTGAGAATCCCGAAGAAGACAAGGTTAAATTGGGTGTACCTGGATGGAGAGATAGGTATTATGAAGAAAAGTTCGATGCAAAAACTCCTGAAGAACGTGAAGCAATTAGAAGAGATGTTGTTTTGCGCTACACTGAAGGTCTGTGTTGGGTGATGCACTATTATTATGAAGGGGTTTGTTCATGGCAGTGGTTTTACCCATACCATTATGCGCCTTTTGCTTCTGATCTCAAGGACCTCGGTGAACTAGATATAAGTTTCGAATTGGGCACTCCCTTTAAACCATTCAATCAGCTGTTGGGGGTTTTCCCTGCTGCAAGTGCCCATGCCCTTCCTGAGGCGTATAGGAAGTTAATGACTGATCCAAACTCGCCTATAATTGATTTTTACCCTTCTGACTTTGAAGTTGATATGAATGGGAAACGATTTGCATGGCAGGGCATTGCAAAACTCCCTTTCATTGATGAAGTCCGTCTTCTTGCTGAGGTTGAAAAACTTGAACAGACATTAACGGAGGAGGAAGCACGAAGAAACAGTGTGATGTTTGAGCTGCTCTTTGTTACATCTTCGCATCCTCTCTCTGTGTGCATATATTCTCTTGACAATCGCTGTAAACAATTGACAGACAAAGAGCGTGTTGGGGTTAAGGAACAAATTGATCCGAAATACAGTGAAGGGATGAATGGCTATCTATCTCCATGTGCTGGAGAGCCCTGTCCCCCCGTTTTTCGTTCTCCTATTCAAAGCATGGAGGATATTATGGACAACCAAGTCATATGTGCAATATACAGACTACCTGATGTGCATGAGCATATAACTCGACCACCACCAGGGGTCATTTTTCCTAAGAAGATTGTCTCATCCGGGGATCTGAAGCCTGCACCTGTTTTGTGGCATGAGGATTCAGGGAGAAAGCCATGGCATGACAATTCAGGGAGGAAGCCATGGCATGATAATTCAGGGACTAATCCACAGGAAAGTTCTAGGCAGCACCCTCCTGGAAGCATTTCTGGAAGACAGCTTGGCGATGCTGCACGTCGACTAGTTGTTAATAGCTTACATGGCAAGACAAACAGCAATGGGTATGGCAGTCAGATGCCTACCCATCAACCACCTTATGCAGAACCTCCATATTACCCACCACACTCTTACGCAAGTAACGGAAGATATGATCCGGGACCCCACAGTATAGCACCACCTAGAACATTCCAGCATCCTCAAGTGCAACACCAAAATTCCTACCACCCTCCGAGCAGACCTCATTCTCAACATTATGATAGAAACTCAGGTCATGCATACCATCAGTCGGCCCGTCATCAGAATGGTGGGATTGCTTACCCTCATAGACCTGTTACACCAGCTCCACCAGGGGTCGTTCCAGGTCCTTATCCAGCTGCTGGTTATATCAACCTTCGGAATTACCAACAAGCTGGGCCACCTGGTTATCAAGGCCATGATGCCTGGGTTCCACCGCCCCAGAGTATGGGCAGAGGATACGGTCGTCCTCAACAATCTGCAAACCAATACTCTGGATTGGACAGAAGAGGAAGCAGGAGACCACCTTCGTCCCAGCATGGGCGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

1049

Amino Acids

118.88

Weight (kDa)

6.52

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 252	1.5e-101	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	326 - 815	2.4e-164	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2330
Acc16I	TGCGCA	1 cut(s)	1293
AccB7I	CCANNNNNTGG	3 cut(s)	2264, 2957, 3043
AccBSI	CCGCTC	1 cut(s)	46
AccI	GTMKAC	3 cut(s)	57, 108, 2599
AccII	CGCG	2 cut(s)	1164, 1423
AclWI	GGATC	6 cut(s)	545, 656, 1916, 2213, 2436, 2726
AcoI	YGGCCR	4 cut(s)	275, 297, 720, 888
AcsI	RAATTY	3 cut(s)	1109, 1153, 2794
AcuI	CTGAAG	7 cut(s)	408, 1256, 1341, 1416, 1671, 1716, 2453
AfaI	GTAC	4 cut(s)	41, 524, 902, 1599
AflIII	ACRYGT	1 cut(s)	671
AhlI	ACTAGT	1 cut(s)	2602
AjiI	CACGTC	3 cut(s)	61, 674, 2597
Alw21I	GWGCWC	2 cut(s)	615, 1225
Alw26I	GTCTC	2 cut(s)	2422, 3109
AlwI	GGATC	6 cut(s)	545, 656, 1916, 2213, 2436, 2726
AlwNI	CAGNNNCTG	1 cut(s)	2957
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	9 cut(s)	200, 275, 297, 720, 888, 964, 2868, 2993, 3010
ApoI	RAATTY	3 cut(s)	1109, 1153, 2794
Asp700I	GAANNNNTTC	1 cut(s)	2566
AspLEI	GCGC	5 cut(s)	990, 1294, 1425, 1689, 1774
AspS9I	GGNCC	7 cut(s)	965, 1361, 1795, 2738, 2869, 2942, 2993
AsuC2I	CCSGG	3 cut(s)	600, 2425, 2736
AsuHPI	GGTGA	7 cut(s)	167, 179, 614, 884, 1359, 1723, 1814
AsuII	TTCGAA	1 cut(s)	1821
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	4 cut(s)	1361, 1795, 2738, 2942
AxyI	CCTNAGG	1 cut(s)	1896
BaeGI	GKGCMC	2 cut(s)	1832, 1885
BaeI	ACNNNNGTAYC	2 cut(s)	3046, 3079
BalI	TGGCCA	3 cut(s)	299, 722, 890
BanII	GRGCYC	2 cut(s)	1225, 2274
BarI	GAAGNNNNNNTAC	4 cut(s)	275, 307, 384, 416
BbsI	GAAGAC	5 cut(s)	629, 1422, 1584, 2027, 2581
Bbv12I	GWGCWC	2 cut(s)	615, 1225
BbvCI	CCTCAGC	1 cut(s)	2043
BccI	CCATC	7 cut(s)	18, 262, 299, 552, 1599, 2673, 2868
BceAI	ACGGC	4 cut(s)	148, 362, 883, 1360
BcgI	CGANNNNNNTGC	4 cut(s)	499, 533, 2360, 2394
BciVI	GTATCC	1 cut(s)	3047
BcnI	CCSGG	3 cut(s)	600, 2425, 2736
BcoDI	GTCTC	2 cut(s)	2422, 3109
BcuI	ACTAGT	1 cut(s)	2602
BfaI	CTAG	5 cut(s)	1389, 1808, 2544, 2603, 2760
BfmI	CTRYAG	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	3047
BglI	GCCNNNNNGGC	1 cut(s)	320
BglII	AGATCT	1 cut(s)	1391
BlpI	GCTNAGC	1 cut(s)	1224
BmcAI	AGTACT	1 cut(s)	524
Bme18I	GGWCC	4 cut(s)	1361, 1795, 2738, 2942
BmeT110I	CYCGRG	1 cut(s)	191
BmgBI	CACGTC	3 cut(s)	61, 674, 2597
BmgT120I	GGNCC	7 cut(s)	965, 1361, 1795, 2738, 2869, 2942, 2993
BmiI	GGNNCC	4 cut(s)	1419, 2739, 2740, 3027
BpiI	GAAGAC	5 cut(s)	629, 1422, 1584, 2027, 2581
BplI	GAGNNNNNCTC	2 cut(s)	2803, 2835
BpmI	CTGGAG	2 cut(s)	873, 2286
Bpu10I	CCTNAGC	1 cut(s)	2043
Bpu1102I	GCTNAGC	1 cut(s)	1224
Bpu14I	TTCGAA	1 cut(s)	1821
BpuEI	CTTGAG	2 cut(s)	1775, 2763
BpuMI	CCSGG	3 cut(s)	600, 2425, 2736
Bsa29I	ATCGAT	1 cut(s)	1333
BsaAI	YACGTR	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	3109
BsaWI	WCCGGW	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	2905, 2935
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	114, 904
Bse21I	CCTNAGG	1 cut(s)	1896
Bse3DI	GCAATG	5 cut(s)	515, 676, 990, 2001, 2644
BseCI	ATCGAT	1 cut(s)	1333
BseMI	GCAATG	5 cut(s)	515, 676, 990, 2001, 2644
BseMII	CTCAG	7 cut(s)	527, 1238, 1461, 1554, 1887, 2034, 2859
BseNI	ACTGG	2 cut(s)	114, 904
BseRI	GAGGAG	1 cut(s)	2090
BseSI	GKGCMC	2 cut(s)	1832, 1885
BseX3I	CGGCCG	1 cut(s)	275
BseYI	CCCAGC	2 cut(s)	2990, 3129
BsgI	GTGCAG	2 cut(s)	2424, 2577
Bsh1236I	CGCG	2 cut(s)	1164, 1423
Bsh1285I	CGRYCG	3 cut(s)	108, 278, 3061
BshFI	GGCC	9 cut(s)	202, 277, 299, 722, 890, 966, 2870, 2995, 3012
BshVI	ATCGAT	1 cut(s)	1333
BsiEI	CGRYCG	3 cut(s)	108, 278, 3061
BsiHKAI	GWGCWC	2 cut(s)	615, 1225
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	6 cut(s)	11, 77, 104, 599, 2424, 2735
BslFI	GGGAC	4 cut(s)	2262, 2536, 2751, 3112
BsmAI	GTCTC	2 cut(s)	2422, 3109
BsmFI	GGGAC	4 cut(s)	2262, 2536, 2751, 3112
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	9 cut(s)	202, 277, 299, 722, 890, 966, 2870, 2995, 3012
Bso31I	GGTCTC	1 cut(s)	3109
BsoBI	CYCGRG	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	1821
Bsp1286I	GDGCHC	5 cut(s)	615, 1225, 1832, 1885, 2274
Bsp143I	GATC	9 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2428, 2731
Bsp1720I	GCTNAGC	1 cut(s)	1224
Bsp19I	CCATGG	2 cut(s)	2477, 2504
BspANI	GGCC	9 cut(s)	202, 277, 299, 722, 890, 966, 2870, 2995, 3012
BspCNI	CTCAG	7 cut(s)	528, 1237, 1462, 1555, 1888, 2035, 2858
BspDI	ATCGAT	1 cut(s)	1333
BspFNI	CGCG	2 cut(s)	1164, 1423
BspLI	GGNNCC	4 cut(s)	1419, 2739, 2740, 3027
BspPI	GGATC	6 cut(s)	545, 656, 1916, 2213, 2436, 2726
BspQI	GCTCTTC	1 cut(s)	66
BspT104I	TTCGAA	1 cut(s)	1821
BspTNI	GGTCTC	1 cut(s)	3109
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	5 cut(s)	515, 676, 990, 2001, 2644
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	114, 904
BssAI	RCCGGY	1 cut(s)	76
BssMI	GATC	9 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2428, 2731
BssT1I	CCWWGG	3 cut(s)	717, 2477, 2504
Bst4CI	ACNGT	7 cut(s)	777, 880, 1447, 2096, 2231, 2747, 3059
Bst6I	CTCTTC	5 cut(s)	66, 402, 1273, 1666, 3097
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	404
BstBI	TTCGAA	1 cut(s)	1821
BstC8I	GCNNGC	8 cut(s)	30, 714, 960, 964, 1144, 1148, 1242, 2439
BstDEI	CTNAG	9 cut(s)	536, 926, 1224, 1470, 1563, 1896, 2043, 2406, 2845
BstDSI	CCRYGG	2 cut(s)	2477, 2504
BstENI	CCTNNNNNAGG	1 cut(s)	1895
BstFNI	CGCG	2 cut(s)	1164, 1423
BstHHI	GCGC	5 cut(s)	990, 1294, 1425, 1689, 1774
BstKTI	GATC	9 cut(s)	344, 553, 664, 1394, 1789, 1924, 2221, 2431, 2734
BstMAI	GTCTC	2 cut(s)	2422, 3109
BstMBI	GATC	9 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2428, 2731
BstMCI	CGRYCG	3 cut(s)	108, 278, 3061
BstNSI	RCATGY	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	19
BstSLI	GKGCMC	2 cut(s)	1832, 1885
BstUI	CGCG	2 cut(s)	1164, 1423
BstV2I	GAAGAC	5 cut(s)	629, 1422, 1584, 2027, 2581
BstX2I	RGATCY	2 cut(s)	1391, 2428
BstXI	CCANNNNNNTGG	2 cut(s)	2990, 3089
BstYI	RGATCY	2 cut(s)	1391, 2428
BstZI	CGGCCG	1 cut(s)	275
Bsu15I	ATCGAT	1 cut(s)	1333
Bsu36I	CCTNAGG	1 cut(s)	1896
BsuI	GTATCC	1 cut(s)	3047
BsuRI	GGCC	9 cut(s)	202, 277, 299, 722, 890, 966, 2870, 2995, 3012
BsuTUI	ATCGAT	1 cut(s)	1333
BtgI	CCRYGG	2 cut(s)	2477, 2504
BtgZI	GCGATG	2 cut(s)	1299, 2601
BtrI	CACGTC	3 cut(s)	61, 674, 2597
BtsI	GCAGTG	1 cut(s)	1754
BtsIMutI	CAGTG	5 cut(s)	239, 1692, 1754, 2101, 2236
Cac8I	GCNNGC	8 cut(s)	30, 714, 960, 964, 1144, 1148, 1242, 2439
CaiI	CAGNNNCTG	1 cut(s)	2957
CfoI	GCGC	5 cut(s)	990, 1294, 1425, 1689, 1774
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	7 cut(s)	965, 1361, 1795, 2738, 2869, 2942, 2993
ClaI	ATCGAT	1 cut(s)	1333
CseI	GACGC	1 cut(s)	1247
CsiI	ACCWGGT	1 cut(s)	2998
Csp6I	GTAC	4 cut(s)	40, 523, 901, 1598
CviQI	GTAC	4 cut(s)	40, 523, 901, 1598
DdeI	CTNAG	9 cut(s)	536, 926, 1224, 1470, 1563, 1896, 2043, 2406, 2845
DpnI	GATC	9 cut(s)	343, 552, 663, 1393, 1788, 1923, 2220, 2430, 2733
DpnII	GATC	9 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2428, 2731
DraI	TTTAAA	1 cut(s)	1840
DrdI	GACNNNNNNGTC	1 cut(s)	2330
DseDI	GACNNNNNNGTC	1 cut(s)	2330
EaeI	YGGCCR	4 cut(s)	275, 297, 720, 888
EagI	CGGCCG	1 cut(s)	275
Eam1104I	CTCTTC	5 cut(s)	66, 402, 1273, 1666, 3097
EarI	CTCTTC	5 cut(s)	66, 402, 1273, 1666, 3097
EciI	GGCGGA	2 cut(s)	47, 1140
Ecl136II	GAGCTC	1 cut(s)	1223
EclXI	CGGCCG	1 cut(s)	275
Eco130I	CCWWGG	3 cut(s)	717, 2477, 2504
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	2 cut(s)	1225, 2274
Eco31I	GGTCTC	1 cut(s)	3109
Eco32I	GATATC	1 cut(s)	1130
Eco47I	GGWCC	4 cut(s)	1361, 1795, 2738, 2942
Eco52I	CGGCCG	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	1223
Eco57I	CTGAAG	7 cut(s)	408, 1256, 1341, 1416, 1671, 1716, 2453
Eco81I	CCTNAGG	1 cut(s)	1896
Eco88I	CYCGRG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	1223
EcoNI	CCTNNNNNAGG	1 cut(s)	1895
EcoO109I	RGGNCCY	4 cut(s)	1361, 1795, 2738, 2942
EcoRV	GATATC	1 cut(s)	1130
EcoT14I	CCWWGG	3 cut(s)	717, 2477, 2504
EcoT22I	ATGCAT	1 cut(s)	2857
EcoT38I	GRGCYC	2 cut(s)	1225, 2274
ErhI	CCWWGG	3 cut(s)	717, 2477, 2504
FalI	AAGNNNNNCTT	4 cut(s)	1518, 1550, 2019, 2051
FaqI	GGGAC	4 cut(s)	2262, 2536, 2751, 3112
FauI	CCCGC	1 cut(s)	51
FauNDI	CATATG	2 cut(s)	1047, 2336
FblI	GTMKAC	3 cut(s)	57, 108, 2599
FriOI	GRGCYC	2 cut(s)	1225, 2274
FspBI	CTAG	5 cut(s)	1389, 1808, 2544, 2603, 2760
FspI	TGCGCA	1 cut(s)	1293
GlaI	GCGC	5 cut(s)	989, 1293, 1424, 1688, 1773
GsaI	CCCAGC	2 cut(s)	2994, 3133
GsuI	CTGGAG	2 cut(s)	873, 2286
HaeIII	GGCC	9 cut(s)	202, 277, 299, 722, 890, 966, 2870, 2995, 3012
HapII	CCGG	6 cut(s)	11, 77, 104, 599, 2424, 2735
HgaI	GACGC	1 cut(s)	1247
HhaI	GCGC	5 cut(s)	990, 1294, 1425, 1689, 1774
Hin6I	GCGC	5 cut(s)	988, 1292, 1423, 1687, 1772
HinP1I	GCGC	5 cut(s)	988, 1292, 1423, 1687, 1772
HincII	GTYRAC	3 cut(s)	58, 109, 2600
HindII	GTYRAC	3 cut(s)	58, 109, 2600
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	8 cut(s)	100, 331, 464, 922, 1063, 1313, 1567, 2462
HpaII	CCGG	6 cut(s)	11, 77, 104, 599, 2424, 2735
HphI	GGTGA	7 cut(s)	167, 179, 614, 884, 1359, 1723, 1814
Hpy166II	GTNNAC	6 cut(s)	58, 109, 1598, 1805, 2174, 2600
Hpy8I	GTNNAC	6 cut(s)	58, 109, 1598, 1805, 2174, 2600
Hpy99I	CGWCG	7 cut(s)	53, 56, 59, 62, 92, 95, 2601
HpyCH4III	ACNGT	7 cut(s)	777, 880, 1447, 2096, 2231, 2747, 3059
HpyCH4IV	ACGT	7 cut(s)	60, 93, 215, 403, 673, 1657, 2596
HpyF3I	CTNAG	9 cut(s)	536, 926, 1224, 1470, 1563, 1896, 2043, 2406, 2845
HpySE526I	ACGT	7 cut(s)	60, 93, 215, 403, 673, 1657, 2596
HspAI	GCGC	5 cut(s)	988, 1292, 1423, 1687, 1772
KflI	GGGWCCC	1 cut(s)	2738
Kzo9I	GATC	9 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2428, 2731
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	3 cut(s)	610, 1168, 2926
MabI	ACCWGGT	1 cut(s)	2998
MaeI	CTAG	5 cut(s)	1389, 1808, 2544, 2603, 2760
MaeII	ACGT	7 cut(s)	60, 93, 215, 403, 673, 1657, 2596
MaeIII	GTNAC	3 cut(s)	2119, 2717, 2911
MalI	GATC	9 cut(s)	343, 552, 663, 1393, 1788, 1923, 2220, 2430, 2733
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	9 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2428, 2731
MfeI	CAATTG	1 cut(s)	2177
MflI	RGATCY	2 cut(s)	1391, 2428
MhlI	GDGCHC	5 cut(s)	615, 1225, 1832, 1885, 2274
MlsI	TGGCCA	3 cut(s)	299, 722, 890
MluNI	TGGCCA	3 cut(s)	299, 722, 890
MlyI	GAGTC	1 cut(s)	916
MmeI	TCCRAC	3 cut(s)	759, 1006, 1168
Mox20I	TGGCCA	3 cut(s)	299, 722, 890
Mph1103I	ATGCAT	1 cut(s)	2857
MroXI	GAANNNNTTC	1 cut(s)	2566
MscI	TGGCCA	3 cut(s)	299, 722, 890
MslI	CAYNNNNRTG	2 cut(s)	1747, 2880
Msp20I	TGGCCA	3 cut(s)	299, 722, 890
MspA1I	CMGCKG	5 cut(s)	386, 962, 1228, 1855, 2954
MspI	CCGG	6 cut(s)	11, 77, 104, 599, 2424, 2735
MunI	CAATTG	1 cut(s)	2177
Mva1269I	GAATGC	1 cut(s)	448
MvnI	CGCG	2 cut(s)	1164, 1423
NciI	CCSGG	3 cut(s)	600, 2425, 2736
NcoI	CCATGG	2 cut(s)	2477, 2504
NdeI	CATATG	2 cut(s)	1047, 2336
NdeII	GATC	9 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2428, 2731
NlaIV	GGNNCC	4 cut(s)	1419, 2739, 2740, 3027
NmeAIII	GCCGAG	1 cut(s)	303
NsbI	TGCGCA	1 cut(s)	1293
NsiI	ATGCAT	1 cut(s)	2857
NspI	RCATGY	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	1821
PasI	CCCWGGG	1 cut(s)	318
PceI	AGGCCT	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 57, 212
PctI	GAATGC	1 cut(s)	448
PdmI	GAANNNNTTC	1 cut(s)	2566
PfeI	GAWTC	7 cut(s)	100, 331, 464, 1063, 1313, 1567, 2462
PflMI	CCANNNNNTGG	3 cut(s)	2264, 2957, 3043
PfoI	TCCNGGA	4 cut(s)	481, 553, 2557, 2734
PleI	GAGTC	1 cut(s)	916
PpsI	GAGTC	1 cut(s)	916
Ppu21I	YACGTR	1 cut(s)	404
PpuMI	RGGWCCY	4 cut(s)	1361, 1795, 2738, 2942
Psp124BI	GAGCTC	1 cut(s)	1225
Psp5II	RGGWCCY	4 cut(s)	1361, 1795, 2738, 2942
PspFI	CCCAGC	2 cut(s)	2990, 3129
PspN4I	GGNNCC	4 cut(s)	1419, 2739, 2740, 3027
PspPI	GGNCC	7 cut(s)	965, 1361, 1795, 2738, 2869, 2942, 2993
PspPPI	RGGWCCY	4 cut(s)	1361, 1795, 2738, 2942
PstNI	CAGNNNCTG	1 cut(s)	2957
PsuI	RGATCY	2 cut(s)	1391, 2428
PvuII	CAGCTG	5 cut(s)	386, 962, 1228, 1855, 2954
RsaI	GTAC	4 cut(s)	41, 524, 902, 1599
RsaNI	GTAC	4 cut(s)	40, 523, 901, 1598
RseI	CAYNNNNRTG	2 cut(s)	1747, 2880
SacI	GAGCTC	1 cut(s)	1225
SalI	GTCGAC	3 cut(s)	56, 107, 2598
SapI	GCTCTTC	1 cut(s)	66
Sau3AI	GATC	9 cut(s)	341, 550, 661, 1391, 1786, 1921, 2218, 2428, 2731
Sau96I	GGNCC	7 cut(s)	965, 1361, 1795, 2738, 2869, 2942, 2993
ScaI	AGTACT	1 cut(s)	524
SchI	GAGTC	1 cut(s)	916
SduI	GDGCHC	5 cut(s)	615, 1225, 1832, 1885, 2274
SexAI	ACCWGGT	1 cut(s)	2998
SfcI	CTRYAG	1 cut(s)	19
SfuI	TTCGAA	1 cut(s)	1821
SgrDI	CGTCGACG	1 cut(s)	56
SinI	GGWCC	4 cut(s)	1361, 1795, 2738, 2942
SmiMI	CAYNNNNRTG	2 cut(s)	1747, 2880
SmlI	CTYRAG	2 cut(s)	1790, 2778
SmoI	CTYRAG	2 cut(s)	1790, 2778
SpeI	ACTAGT	1 cut(s)	2602
SseBI	AGGCCT	1 cut(s)	202
SspI	AATATT	3 cut(s)	916, 935, 1209
SspMI	CTAG	5 cut(s)	1389, 1808, 2544, 2603, 2760
SstI	GAGCTC	1 cut(s)	1225
StuI	AGGCCT	1 cut(s)	202
StyI	CCWWGG	3 cut(s)	717, 2477, 2504
TaaI	ACNGT	7 cut(s)	777, 880, 1447, 2096, 2231, 2747, 3059
TaiI	ACGT	7 cut(s)	63, 96, 218, 406, 676, 1660, 2599
TatI	WGTACW	1 cut(s)	522
TauI	GCSGC	4 cut(s)	277, 383, 821, 1164
TfiI	GAWTC	7 cut(s)	100, 331, 464, 1063, 1313, 1567, 2462
TscAI	CASTG	5 cut(s)	239, 1699, 1754, 2101, 2236
TspGWI	ACGGA	4 cut(s)	859, 2021, 2087, 2736
TspRI	CASTG	5 cut(s)	239, 1699, 1754, 2101, 2236
Van91I	CCANNNNNTGG	3 cut(s)	2264, 2957, 3043
VpaK11BI	GGWCC	4 cut(s)	1361, 1795, 2738, 2942
XagI	CCTNNNNNAGG	1 cut(s)	1895
XapI	RAATTY	3 cut(s)	1109, 1153, 2794
XbaI	TCTAGA	1 cut(s)	1388
XceI	RCATGY	1 cut(s)	241
XmiI	GTMKAC	3 cut(s)	57, 108, 2599
XmnI	GAANNNNTTC	1 cut(s)	2566
XspI	CTAG	5 cut(s)	1389, 1808, 2544, 2603, 2760
ZrmI	AGTACT	1 cut(s)	524
Zsp2I	ATGCAT	1 cut(s)	2857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.