Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Reverse (-)

68034881 .. 68042683

Gene Structure 7803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG473800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2961 bp

ATGAATGGGATTATTCACCCTTGTTTTCACCCTGAGGATAGGCCTTCACCAACTACCTTTGATGAGGTATTTCAGTGCATGTTTGACTACATAGATAGGCTTTTTGTGATGGTGCGGCCTCGGAAGCTACTGTACATGGCAATTGATGGTGTTGCCCCTAGGGCGAAAATGAATCAACAGAGATCCCGGCGGTTTAGAGCTGCTAAAGATGCAGCAGATGCGGCAGCTGAAGAAGAAAGGCTGCGTGAGGAGTTTGAAATGGAGGGAAGAAAGCTTCCACCTAAACTGCATTCGCAAACTTTTGATTCCAATGTCATTACTCCTGGAACTCCATTTATGGCTGTTTTGTCAATTGCATTGCAGTACTATATTCATCTTAGATTAAATAACGATCCTGGATGGAAAAATGTTAAGGTCATTCTTTCCGATGCAAATGTTCCGGGTGAAGGAGAGCACAAGGTTATGTCATACATTCGTCTTCAAAGAAATCTTCCTGGTTATGATCCAAATACACGTCATTGCCTGTATGGTTTGGATGCCGATTTAATTATGCTTGCCTTGGCCACCCATGAAGTTCATTTCTCCATTCTTCGAGAGGTTGTTTTCGTCGCTGGACAGCAGGACAAGTGCTTCCTGTGTGGTCAGGTGGGTCATTTAGCTGCCAGTTGTGAAGGAAAGGCAAAACGGAAGGCTGGAGAGCTTGATGAGAAAGGTGATGCCGAGGCTGTGGCCAAGAAGCCGTACCAGTTTCTCAATATTTGGACCCTTAGAGAATATTTGGAATATGAGATGCGGATTCCAGGTGCCCCATTTGAGATTGATATTGAGCGCATTGTGGATGACTTTATATTCCTTTGTTTCTTTGTCGGAAATGATTTCTTACCTCATATGCCTACACTGGAGATTCGGGAGGGTGCAATCAACTTGCTTTTGGCTGTATATAAAAAGGAATTTAGGGGAATGGGGGGATATCTGACTAATGCAAGCAAGCCAAATTTGAGGCGGGTGGAGCATTTCATTCAGGCAGTTGGAAGTTATGAAGATAAAATATTCCAGAAAAGAGCTCAACTGCATCTGAAGCAAGCAGAAAGAATAAAGCGTCAAAAGGCACAAGCTCGAAGAGGAGATGACGCAGAGCCCCAAGTGCAACCAGATTCTTTAGTTGCAGTTAATCGGTTTCATGGTTCTCGTCTTGCTTCAGGTCCTTCACCTGTGCCGTTTCAACAATCTGGATCTGGTAGAGGAAATCCTCAAAAGGTTGCACGCTTGTCTTCAGAGGCATCAACTGTCGGTGCTGCTATTGTTGAAGCTGAGAACATTCTTGAAGATGTTCATGAAAACAAAGAAGATTTGAAAATAAAGCTCAAGGAGGTTCTTCGTGAGAAATCTGATGCTTTTAACTCTAAAAATCCTGAAGAAGACAAGGTTAAATTGGGTGAACCTGGATGGAGAGAGAGGTATTATGAAGAGAAGTTTAATGCAAAAACTCCCGAAGAACGTGAAGCAATTCGAAGAGATGTTGTTTTGCGTTACACTGAAGGTCTGTGTTGGGTGATGCACTATTATTATGAAGGGGTTTGTTCATGGCAGTGGTTTTACCCTTACCATTATGCGCCCTTTGCTTCTGATCTCAAGGACCTCGGTCAACTAGATATAAGTTTTGAATTGGGCAGTCCCTTTAAACCGTTCAATCAGCTGTTAGGGGTTTTTCCTGCTGCAAGTGCCCATGCCCTTCCTGAGGCATACAGGAAGCTGATGACTGATCCAAACTCACCTCTTATTGATTTTTACCCTACTGACTTTGAAGTGGATATGAATGGGAAACGATTTGCATGGCAGGGTATTGCAAAACTCCCTTTCATTGATGAAGTCCGTCTTCTTTCTGAGGTTGAAAAACTTGAACATGCATTAACGGAGGAGGAATCACGCAGAAACAGTGTGATGTTTGAGATGCTCTTTGTTACATCTTCTCATCCTCTCTCTGTGTGCATATATTCTCTTGACAATCGCTGTAAACAATTGACAGACAAAGAGCGTGTTGAGTTTAAGGAACAAATTGATCCCAAATACAGGGATACATGCAGTGAAGGGATGAACGGCTATCTATCTCCATGTGCTGGAGAGCCTTGTCCTCCCGTTTTCCGATCTCCTGTTGAAAGCATGGAGGATATAATGGACAACCAAGTCATATGCGCAATATACAGACTACCAGATGTACATGAGCATATAACTCGACCACCAGCAGGGGTCATTTTCCCTAAGAAGATTGTGTCATCGGGGGATATGAAGCCTGCACCTGTTTTGTGGCATGAGGATTCAGGGAGGAAGCCATGGCATGACAATTCGGGGAGGAGGCCATATGAAAGTTCTAGGCAGCACCCTCCTGGAGCCATTTCTGGAAGACAGCTTGGCGATGCCGCTCATCGACTTGTTGTTAATAGCTTACATGTTAAGGCAAACAGCAATGGGTATGGCAATCAGATGCCTGCCCATCAACCATATGCCGAACCTCCATATTACCCACCACGCGCTTCCTACGCAAGTAATGGAAGCTATGATCAGGGACACAACAGTATGGCACCACCTAGAACATTCCAGCATCCTCAAGTGCAACACCAAAATACCTACCACCCTCCGAATAGACCTCATTCTCAGCATTATGAAAGAAATTCTGGTCACTCATACTATCAGTCGGCCCGTCATCAGAATGGTGGAATTGCTTACCCCCAGAGACCAATTACACCAGCTCCACCAGGGGTCAATCCAGGTCCCTATCCAGTTGGTTATAACAACTATCAGAGTTTAGGGCCGCCTGGTTATCAAGGCATTGATGCCTGGGTTCCACCGCCCCAGAATATGGGCAGAGGATATGGTCGTCCTCAGCAATCTGGAAACCCATACTCTGGATTGGACAGGAGAGGAAATAGGAGACCACCTCCATCCCAGCATGGCCGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

986

Amino Acids

112.16

Weight (kDa)

7.23

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 199	1.7e-85	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	273 - 762	1.8e-164	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2787
AasI	GACNNNNNNGTC	1 cut(s)	2183
Acc16I	TGCGCA	1 cut(s)	2194
AccB1I	GGYRCC	2 cut(s)	803, 2578
AccB7I	CCANNNNNTGG	3 cut(s)	2117, 2857, 2903
AccBSI	CCGCTC	1 cut(s)	2420
AccII	CGCG	1 cut(s)	2529
AciI	CCGC	9 cut(s)	115, 190, 221, 793, 1003, 2418, 2810, 2846, 2953
AclWI	GGATC	6 cut(s)	177, 386, 497, 1240, 1757, 2054
AcoI	YGGCCR	3 cut(s)	561, 729, 2950
AcsI	RAATTY	3 cut(s)	950, 994, 2668
AcuI	CTGAAG	6 cut(s)	249, 1097, 1182, 1257, 1434, 1557
AfaI	GTAC	4 cut(s)	134, 365, 743, 2217
AfiI	CCNNNNNNNGG	7 cut(s)	446, 1738, 2070, 2117, 2243, 2857, 2903
AflIII	ACRYGT	2 cut(s)	512, 2446
AjiI	CACGTC	1 cut(s)	515
Alw21I	GWGCWC	2 cut(s)	456, 1066
Alw26I	GTCTC	2 cut(s)	2725, 2923
AlwI	GGATC	6 cut(s)	177, 386, 497, 1240, 1757, 2054
AoxI	GGCC	8 cut(s)	41, 116, 561, 729, 2354, 2694, 2807, 2950
ApeKI	GCWGC	8 cut(s)	200, 212, 224, 241, 659, 1295, 1715, 2374
ApoI	RAATTY	3 cut(s)	950, 994, 2668
Asp700I	GAANNNNTTC	2 cut(s)	1329, 1506
AspA2I	CCTAGG	1 cut(s)	158
AspLEI	GCGC	4 cut(s)	831, 1615, 2195, 2531
AspS9I	GGNCC	6 cut(s)	762, 1202, 1636, 2695, 2768, 2807
AsuC2I	CCSGG	2 cut(s)	187, 441
AsuHPI	GGTGA	9 cut(s)	8, 20, 39, 455, 725, 1200, 1448, 1564, 1764
AsuII	TTCGAA	1 cut(s)	1510
AvaII	GGWCC	4 cut(s)	762, 1202, 1636, 2768
AvrII	CCTAGG	1 cut(s)	158
AxyI	CCTNAGG	2 cut(s)	33, 1737
BaeGI	GKGCMC	2 cut(s)	808, 1726
BalI	TGGCCA	2 cut(s)	563, 731
BanI	GGYRCC	2 cut(s)	803, 2578
BanII	GRGCYC	2 cut(s)	1066, 1140
BarI	GAAGNNNNNNTAC	2 cut(s)	116, 148
BbsI	GAAGAC	5 cut(s)	470, 1263, 1425, 1868, 2407
Bbv12I	GWGCWC	2 cut(s)	456, 1066
BbvCI	CCTCAGC	1 cut(s)	2880
BbvI	GCAGC	8 cut(s)	187, 224, 228, 236, 646, 1282, 1702, 2386
BccI	CCATC	6 cut(s)	103, 140, 393, 1440, 2499, 2947
BceAI	ACGGC	3 cut(s)	724, 1201, 2113
BcgI	CGANNNNNNTGC	2 cut(s)	2213, 2247
BciVI	GTATCC	1 cut(s)	2068
BclI	TGATCA	1 cut(s)	2557
BcnI	CCSGG	2 cut(s)	187, 441
BcoDI	GTCTC	2 cut(s)	2725, 2923
BfaI	CTAG	4 cut(s)	159, 1649, 2370, 2586
BfuI	GTATCC	1 cut(s)	2068
BglI	GCCNNNNNGGC	1 cut(s)	161
BlnI	CCTAGG	1 cut(s)	158
BmcAI	AGTACT	1 cut(s)	365
Bme18I	GGWCC	4 cut(s)	762, 1202, 1636, 2768
BmgBI	CACGTC	1 cut(s)	515
BmgT120I	GGNCC	6 cut(s)	762, 1202, 1636, 2695, 2768, 2807
BmiI	GGNNCC	6 cut(s)	764, 805, 2389, 2580, 2770, 2841
BoxI	GACNNNNGTC	1 cut(s)	1641
BpiI	GAAGAC	5 cut(s)	470, 1263, 1425, 1868, 2407
BplI	GAGNNNNNCTC	2 cut(s)	2920, 2952
BpmI	CTGGAG	4 cut(s)	714, 920, 2139, 2406
Bpu10I	CCTNAGC	1 cut(s)	2880
Bpu14I	TTCGAA	1 cut(s)	1510
BpuEI	CTTGAG	3 cut(s)	1349, 1616, 2589
BpuMI	CCSGG	2 cut(s)	187, 441
BsaI	GGTCTC	2 cut(s)	2725, 2923
BsaJI	CCNNGG	8 cut(s)	119, 158, 558, 720, 1639, 2330, 2753, 2835
BsaXI	ACNNNNNCTCC	2 cut(s)	2731, 2761
Bsc4I	CCNNNNNNNGG	7 cut(s)	446, 1738, 2070, 2117, 2243, 2857, 2903
Bse1I	ACTGG	4 cut(s)	663, 745, 903, 2777
Bse21I	CCTNAGG	2 cut(s)	33, 1737
Bse3DI	GCAATG	3 cut(s)	356, 517, 2470
BseDI	CCNNGG	8 cut(s)	119, 158, 558, 720, 1639, 2330, 2753, 2835
BseGI	GGATG	8 cut(s)	404, 541, 844, 1451, 1972, 2097, 2599, 2939
BseLI	CCNNNNNNNGG	7 cut(s)	446, 1738, 2070, 2117, 2243, 2857, 2903
BseMI	GCAATG	3 cut(s)	356, 517, 2470
BseMII	CTCAG	6 cut(s)	24, 1302, 1728, 1875, 2666, 2894
BseNI	ACTGG	4 cut(s)	663, 745, 903, 2777
BseRI	GAGGAG	4 cut(s)	263, 1137, 1931, 2365
BseSI	GKGCMC	2 cut(s)	808, 1726
BseXI	GCAGC	8 cut(s)	187, 224, 228, 236, 646, 1282, 1702, 2386
BseYI	CCCAGC	1 cut(s)	2943
BsgI	GTGCAG	1 cut(s)	2277
Bsh1236I	CGCG	1 cut(s)	2529
BshFI	GGCC	8 cut(s)	43, 118, 563, 731, 2356, 2696, 2809, 2952
BshNI	GGYRCC	2 cut(s)	803, 2578
BsiHKAI	GWGCWC	2 cut(s)	456, 1066
BsiSI	CCGG	2 cut(s)	187, 440
BslFI	GGGAC	3 cut(s)	1659, 2577, 2754
BslI	CCNNNNNNNGG	7 cut(s)	446, 1738, 2070, 2117, 2243, 2857, 2903
BsmAI	GTCTC	2 cut(s)	2725, 2923
BsmFI	GGGAC	3 cut(s)	1659, 2577, 2754
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	8 cut(s)	43, 118, 563, 731, 2356, 2696, 2809, 2952
Bso31I	GGTCTC	2 cut(s)	2725, 2923
Bsp119I	TTCGAA	1 cut(s)	1510
Bsp1286I	GDGCHC	5 cut(s)	456, 808, 1066, 1140, 1726
Bsp1407I	TGTACA	2 cut(s)	132, 2215
Bsp143I	GATC	9 cut(s)	182, 391, 502, 1232, 1627, 1762, 2059, 2144, 2557
Bsp19I	CCATGG	1 cut(s)	2330
BspACI	CCGC	9 cut(s)	115, 190, 221, 793, 1003, 2418, 2810, 2846, 2953
BspANI	GGCC	8 cut(s)	43, 118, 563, 731, 2356, 2696, 2809, 2952
BspCNI	CTCAG	6 cut(s)	25, 1303, 1729, 1876, 2665, 2893
BspFNI	CGCG	1 cut(s)	2529
BspHI	TCATGA	1 cut(s)	1333
BspLI	GGNNCC	6 cut(s)	764, 805, 2389, 2580, 2770, 2841
BspPI	GGATC	6 cut(s)	177, 386, 497, 1240, 1757, 2054
BspT104I	TTCGAA	1 cut(s)	1510
BspT107I	GGYRCC	2 cut(s)	803, 2578
BspTNI	GGTCTC	2 cut(s)	2725, 2923
BsrBI	CCGCTC	1 cut(s)	2420
BsrDI	GCAATG	3 cut(s)	356, 517, 2470
BsrGI	TGTACA	2 cut(s)	132, 2215
BsrI	ACTGG	4 cut(s)	663, 745, 903, 2777
BssECI	CCNNGG	8 cut(s)	119, 158, 558, 720, 1639, 2330, 2753, 2835
BssMI	GATC	9 cut(s)	182, 391, 502, 1232, 1627, 1762, 2059, 2144, 2557
BssT1I	CCWWGG	3 cut(s)	158, 558, 2330
Bst4CI	ACNGT	5 cut(s)	132, 1288, 1686, 1937, 2573
Bst6I	CTCTTC	3 cut(s)	1114, 1461, 1507
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstAUI	TGTACA	2 cut(s)	132, 2215
BstBI	TTCGAA	1 cut(s)	1510
BstC8I	GCNNGC	7 cut(s)	555, 985, 989, 1083, 1264, 2292, 2487
BstDEI	CTNAG	9 cut(s)	33, 377, 767, 1311, 1737, 1884, 2259, 2652, 2880
BstDSI	CCRYGG	1 cut(s)	2330
BstENI	CCTNNNNNAGG	1 cut(s)	1736
BstF5I	GGATG	8 cut(s)	404, 541, 844, 1451, 1972, 2097, 2599, 2939
BstFNI	CGCG	1 cut(s)	2529
BstHHI	GCGC	4 cut(s)	831, 1615, 2195, 2531
BstKTI	GATC	9 cut(s)	185, 394, 505, 1235, 1630, 1765, 2062, 2147, 2560
BstMAI	GTCTC	2 cut(s)	2725, 2923
BstMBI	GATC	9 cut(s)	182, 391, 502, 1232, 1627, 1762, 2059, 2144, 2557
BstNSI	RCATGY	4 cut(s)	82, 1907, 2082, 2450
BstPAI	GACNNNNGTC	1 cut(s)	1641
BstSLI	GKGCMC	2 cut(s)	808, 1726
BstUI	CGCG	1 cut(s)	2529
BstV1I	GCAGC	8 cut(s)	187, 224, 228, 236, 646, 1282, 1702, 2386
BstV2I	GAAGAC	5 cut(s)	470, 1263, 1425, 1868, 2407
BstX2I	RGATCY	2 cut(s)	182, 1232
BstYI	RGATCY	2 cut(s)	182, 1232
Bsu36I	CCTNAGG	2 cut(s)	33, 1737
BsuI	GTATCC	1 cut(s)	2068
BsuRI	GGCC	8 cut(s)	43, 118, 563, 731, 2356, 2696, 2809, 2952
BtgI	CCRYGG	1 cut(s)	2330
BtgZI	GCGATG	1 cut(s)	2427
BtrI	CACGTC	1 cut(s)	515
BtsCI	GGATG	8 cut(s)	404, 541, 844, 1451, 1972, 2097, 2599, 2939
BtsI	GCAGTG	2 cut(s)	1595, 2089
BtsIMutI	CAGTG	6 cut(s)	80, 896, 1533, 1595, 1942, 2089
Cac8I	GCNNGC	7 cut(s)	555, 985, 989, 1083, 1264, 2292, 2487
CciI	TCATGA	1 cut(s)	1333
CfoI	GCGC	4 cut(s)	831, 1615, 2195, 2531
Cfr13I	GGNCC	6 cut(s)	762, 1202, 1636, 2695, 2768, 2807
CseI	GACGC	2 cut(s)	1088, 1139
Csp6I	GTAC	4 cut(s)	133, 364, 742, 2216
CviQI	GTAC	4 cut(s)	133, 364, 742, 2216
DdeI	CTNAG	9 cut(s)	33, 377, 767, 1311, 1737, 1884, 2259, 2652, 2880
DpnI	GATC	9 cut(s)	184, 393, 504, 1234, 1629, 1764, 2061, 2146, 2559
DpnII	GATC	9 cut(s)	182, 391, 502, 1232, 1627, 1762, 2059, 2144, 2557
DraI	TTTAAA	1 cut(s)	1681
DrdI	GACNNNNNNGTC	1 cut(s)	2183
DseDI	GACNNNNNNGTC	1 cut(s)	2183
EaeI	YGGCCR	3 cut(s)	561, 729, 2950
Eam1104I	CTCTTC	3 cut(s)	1114, 1461, 1507
EarI	CTCTTC	3 cut(s)	1114, 1461, 1507
Ecl136II	GAGCTC	1 cut(s)	1064
Eco130I	CCWWGG	3 cut(s)	158, 558, 2330
Eco147I	AGGCCT	1 cut(s)	43
Eco24I	GRGCYC	2 cut(s)	1066, 1140
Eco31I	GGTCTC	2 cut(s)	2725, 2923
Eco32I	GATATC	1 cut(s)	971
Eco47I	GGWCC	4 cut(s)	762, 1202, 1636, 2768
Eco53kI	GAGCTC	1 cut(s)	1064
Eco57I	CTGAAG	6 cut(s)	249, 1097, 1182, 1257, 1434, 1557
Eco81I	CCTNAGG	2 cut(s)	33, 1737
EcoICRI	GAGCTC	1 cut(s)	1064
EcoNI	CCTNNNNNAGG	1 cut(s)	1736
EcoO109I	RGGNCCY	3 cut(s)	1202, 1636, 2768
EcoRV	GATATC	1 cut(s)	971
EcoT14I	CCWWGG	3 cut(s)	158, 558, 2330
EcoT22I	ATGCAT	1 cut(s)	1909
EcoT38I	GRGCYC	2 cut(s)	1066, 1140
ErhI	CCWWGG	3 cut(s)	158, 558, 2330
FalI	AAGNNNNNCTT	2 cut(s)	1860, 1892
FaqI	GGGAC	3 cut(s)	1659, 2577, 2754
FauI	CCCGC	1 cut(s)	996
FauNDI	CATATG	4 cut(s)	888, 2189, 2359, 2500
FbaI	TGATCA	1 cut(s)	2557
FokI	GGATG	8 cut(s)	411, 548, 851, 1458, 1959, 2104, 2586, 2926
FriOI	GRGCYC	2 cut(s)	1066, 1140
FspBI	CTAG	4 cut(s)	159, 1649, 2370, 2586
FspI	TGCGCA	1 cut(s)	2194
GlaI	GCGC	4 cut(s)	830, 1614, 2194, 2530
GsaI	CCCAGC	1 cut(s)	2947
GsuI	CTGGAG	4 cut(s)	714, 920, 2139, 2406
HaeIII	GGCC	8 cut(s)	43, 118, 563, 731, 2356, 2696, 2809, 2952
HapII	CCGG	2 cut(s)	187, 440
HgaI	GACGC	2 cut(s)	1088, 1139
HhaI	GCGC	4 cut(s)	831, 1615, 2195, 2531
Hin6I	GCGC	4 cut(s)	829, 1613, 2193, 2529
HinP1I	GCGC	4 cut(s)	829, 1613, 2193, 2529
HincII	GTYRAC	1 cut(s)	1646
HindII	GTYRAC	1 cut(s)	1646
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	7 cut(s)	172, 305, 796, 904, 1154, 1922, 2315
HpaII	CCGG	2 cut(s)	187, 440
HphI	GGTGA	9 cut(s)	8, 20, 39, 455, 725, 1200, 1448, 1564, 1764
Hpy166II	GTNNAC	3 cut(s)	1439, 1646, 2015
Hpy8I	GTNNAC	3 cut(s)	1439, 1646, 2015
Hpy99I	CGWCG	1 cut(s)	611
HpyAV	CCTTC	9 cut(s)	54, 440, 665, 682, 1215, 1532, 1565, 1742, 2081
HpyCH4III	ACNGT	5 cut(s)	132, 1288, 1686, 1937, 2573
HpyCH4IV	ACGT	2 cut(s)	514, 1498
HpyF3I	CTNAG	9 cut(s)	33, 377, 767, 1311, 1737, 1884, 2259, 2652, 2880
HpySE526I	ACGT	2 cut(s)	514, 1498
HspAI	GCGC	4 cut(s)	829, 1613, 2193, 2529
Ksp22I	TGATCA	1 cut(s)	2557
Kzo9I	GATC	9 cut(s)	182, 391, 502, 1232, 1627, 1762, 2059, 2144, 2557
LmnI	GCTCC	3 cut(s)	1009, 2387, 2752
Lsp1109I	GCAGC	8 cut(s)	187, 224, 228, 236, 646, 1282, 1702, 2386
MaeI	CTAG	4 cut(s)	159, 1649, 2370, 2586
MaeII	ACGT	2 cut(s)	514, 1498
MaeIII	GTNAC	3 cut(s)	1529, 1960, 2675
MalI	GATC	9 cut(s)	184, 393, 504, 1234, 1629, 1764, 2061, 2146, 2559
MbiI	CCGCTC	1 cut(s)	2420
MboI	GATC	9 cut(s)	182, 391, 502, 1232, 1627, 1762, 2059, 2144, 2557
MfeI	CAATTG	3 cut(s)	141, 351, 2018
MflI	RGATCY	2 cut(s)	182, 1232
MhlI	GDGCHC	5 cut(s)	456, 808, 1066, 1140, 1726
MlsI	TGGCCA	2 cut(s)	563, 731
MluNI	TGGCCA	2 cut(s)	563, 731
MmeI	TCCRAC	2 cut(s)	847, 1009
Mox20I	TGGCCA	2 cut(s)	563, 731
Mph1103I	ATGCAT	1 cut(s)	1909
MroXI	GAANNNNTTC	2 cut(s)	1329, 1506
MscI	TGGCCA	2 cut(s)	563, 731
MslI	CAYNNNNRTG	2 cut(s)	1588, 2706
Msp20I	TGGCCA	2 cut(s)	563, 731
MspA1I	CMGCKG	2 cut(s)	227, 1696
MspI	CCGG	2 cut(s)	187, 440
MunI	CAATTG	3 cut(s)	141, 351, 2018
Mva1269I	GAATGC	1 cut(s)	289
MvnI	CGCG	1 cut(s)	2529
NciI	CCSGG	2 cut(s)	187, 441
NcoI	CCATGG	1 cut(s)	2330
NdeI	CATATG	4 cut(s)	888, 2189, 2359, 2500
NdeII	GATC	9 cut(s)	182, 391, 502, 1232, 1627, 1762, 2059, 2144, 2557
NlaIV	GGNNCC	6 cut(s)	764, 805, 2389, 2580, 2770, 2841
NmeAIII	GCCGAG	1 cut(s)	745
NmuCI	GTSAC	1 cut(s)	2675
NsbI	TGCGCA	1 cut(s)	2194
NsiI	ATGCAT	1 cut(s)	1909
NspI	RCATGY	4 cut(s)	82, 1907, 2082, 2450
NspV	TTCGAA	1 cut(s)	1510
PagI	TCATGA	1 cut(s)	1333
PceI	AGGCCT	1 cut(s)	43
PciI	ACATGT	1 cut(s)	2446
PctI	GAATGC	1 cut(s)	289
PdmI	GAANNNNTTC	2 cut(s)	1329, 1506
PfeI	GAWTC	7 cut(s)	172, 305, 796, 904, 1154, 1922, 2315
PflMI	CCANNNNNTGG	3 cut(s)	2117, 2857, 2903
PfoI	TCCNGGA	3 cut(s)	322, 394, 2383
PpuMI	RGGWCCY	3 cut(s)	1202, 1636, 2768
PscI	ACATGT	1 cut(s)	2446
PshAI	GACNNNNGTC	1 cut(s)	1641
PsiI	TTATAA	1 cut(s)	2787
Psp124BI	GAGCTC	1 cut(s)	1066
Psp5II	RGGWCCY	3 cut(s)	1202, 1636, 2768
PspFI	CCCAGC	1 cut(s)	2943
PspN4I	GGNNCC	6 cut(s)	764, 805, 2389, 2580, 2770, 2841
PspPI	GGNCC	6 cut(s)	762, 1202, 1636, 2695, 2768, 2807
PspPPI	RGGWCCY	3 cut(s)	1202, 1636, 2768
PsuI	RGATCY	2 cut(s)	182, 1232
PvuII	CAGCTG	2 cut(s)	227, 1696
RsaI	GTAC	4 cut(s)	134, 365, 743, 2217
RsaNI	GTAC	4 cut(s)	133, 364, 742, 2216
RseI	CAYNNNNRTG	2 cut(s)	1588, 2706
SacI	GAGCTC	1 cut(s)	1066
Sau3AI	GATC	9 cut(s)	182, 391, 502, 1232, 1627, 1762, 2059, 2144, 2557
Sau96I	GGNCC	6 cut(s)	762, 1202, 1636, 2695, 2768, 2807
ScaI	AGTACT	1 cut(s)	365
SduI	GDGCHC	5 cut(s)	456, 808, 1066, 1140, 1726
SfuI	TTCGAA	1 cut(s)	1510
SinI	GGWCC	4 cut(s)	762, 1202, 1636, 2768
SmiMI	CAYNNNNRTG	2 cut(s)	1588, 2706
SmlI	CTYRAG	3 cut(s)	1364, 1631, 2604
SmoI	CTYRAG	3 cut(s)	1364, 1631, 2604
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	9 cut(s)	115, 190, 221, 793, 1003, 2418, 2810, 2846, 2953
SspI	AATATT	3 cut(s)	757, 776, 1050
SspMI	CTAG	4 cut(s)	159, 1649, 2370, 2586
SstI	GAGCTC	1 cut(s)	1066
StuI	AGGCCT	1 cut(s)	43
StyI	CCWWGG	3 cut(s)	158, 558, 2330
TaaI	ACNGT	5 cut(s)	132, 1288, 1686, 1937, 2573
TaiI	ACGT	2 cut(s)	517, 1501
TaqI	TCGA	5 cut(s)	592, 1117, 1510, 2233, 2425
TaqII	GACCGA	1 cut(s)	1631
TatI	WGTACW	3 cut(s)	132, 363, 2215
TauI	GCSGC	5 cut(s)	118, 224, 2420, 2812, 2955
TfiI	GAWTC	7 cut(s)	172, 305, 796, 904, 1154, 1922, 2315
TscAI	CASTG	6 cut(s)	80, 903, 1540, 1595, 1942, 2089
TseFI	GTSAC	1 cut(s)	2675
TseI	GCWGC	8 cut(s)	200, 212, 224, 241, 659, 1295, 1715, 2374
Tsp45I	GTSAC	1 cut(s)	2675
TspGWI	ACGGA	3 cut(s)	700, 1862, 1928
TspRI	CASTG	6 cut(s)	80, 903, 1540, 1595, 1942, 2089
Van91I	CCANNNNNTGG	3 cut(s)	2117, 2857, 2903
VpaK11BI	GGWCC	4 cut(s)	762, 1202, 1636, 2768
XagI	CCTNNNNNAGG	1 cut(s)	1736
XapI	RAATTY	3 cut(s)	950, 994, 2668
XceI	RCATGY	4 cut(s)	82, 1907, 2082, 2450
XmaJI	CCTAGG	1 cut(s)	158
XmnI	GAANNNNTTC	2 cut(s)	1329, 1506
XspI	CTAG	4 cut(s)	159, 1649, 2370, 2586
ZrmI	AGTACT	1 cut(s)	365
Zsp2I	ATGCAT	1 cut(s)	1909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.