Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Forward (+)

6123043 .. 6126660

Gene Structure 3618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG073500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2979 bp

ATGGGGGTTCCGGCTTTCTATAGATGGTTAGCGGAGAAGTATCCGCTTGTGGTTGTAGATGTGGTGGAGGAGGAACCGATTGTGATTGATGATGTTTCGATTCCGGTTGACACCACGAAACCGAACCCGAACGGTCTTGAGTTTGACAATCTTTACTTGGACATGAATGGGATTATTCATCCTTGTTTTCACCCTGAGGACAGGCCGAGTCCGACGACTTTTGATGAGGTGTTTCAGTGCATGTTTGAGTATATAGATAGGATTTTTGGGATGGTGCGGCCGAGAAAGGTACTGTACATGGCCATTGATGGTGTTGCCCCTAGGGCGAAGATGAATCAGCAGAGGTCGAGGAGGTTTAGGGCTGCGAAAGACGCGGCGGACGCGGCGGCTGAAGAAGAGAAGCTTCGTGAGGAGTTTGAAGCGGAGGGGAGGAAGCTTCCGCCAAAATTGCAGTCGCAAACTTTTGATTCCAATGTCATTACTCCTGGAACTCCTTTTATGGCTGTTTTATCAGTTGCATTGCAGTACTATATTCATCTTAGGTTAAATAATGATCCTGGATGGAAAAATGTTAAGGTTATCCTTTCTGATGCAAATGCTCCGGGTGAAGGGGAACACAAGATTATGTCATATATTCGTCTTCAAAGAAACCTTCCTGGTTATGATCCGAATACGCGTCATTGCCTGTATGGTTTGGATGCCGATTTAATTATGCTGGCTTTGGCTACACATGAAGTTCATTTTTCAATCCTGCGAGAGGTTGTTTTCACTGCACAGCAAGACAAATGCTTCCTTTGTGGTCAGATGGGTCATTTAGCGGCAGATTGTGAAGGAAAGGCAAAACGAAAGGATGGAGATCACCTTGATGACGATCAGAAAGGTACCAGTGCTGAGGTGGTGGCCAAGAAGCCGTACCAGTTTCTCAACATTTGGACTCTTAGAGAATATTTAGACTATGAGATGCGGAATATTCCCAATTCCCCATTTGAGATTGATCTTGAGCGCATTGTGGATGATTTCATATTCATTTGTTTTTTCGTTGGAAATGATTTCCTGCCACATATGCCTACTCTGGAGATTCGTGAGGGTGCAATCAACTTGCTTATGGCTGTATACAAAAAGGAATTTCATGCACTGGGTGGATATCTGACTGATTCAAGCAAGCTGAATTTGAGTCGGGTGGAGCGTTTCATTCAGGCAGTTGGTTGTTATGAAGACAAAATATTCCAGAAACGAGCTCAATTGCATCAGCGGCAGGCACAAAGAATAAAGCGTGCCAAGGTGCAAGTTCCCCAAGTTCAGCCAGATTCTTTAGTTGCAGTTAATCGATTTCAAGGTTCTCGTCTTGCTTCAGGTCCTTCTCCCGCGCCCTATCAACAGTATTCTAGATCATCTGGTAGAGAAAATCCTGAAAAAGTTGCACGCTTATCTTCCGAGGCATCAAGTGTTGGTGCTGCTATTGTTGAAGCTGAGAACAGCAGTACTCTTGATGTTGAAGTGCATGAAAATAAGGAAGATTTAAAAGCAAAGCTCAAAGAGATTCTTCGTGAGAAATCCGATGCTTTTAACTCTAAAAATCCCCAAGAAGACAAGGTTAAATTGGGAGAACCTGGATGGAGGGATAGGTATTATGAAGAAAAGTTTTCTGCAAAAACTCAGGAAGAACGTGAAGCAGTTCGTAAAGATGTTATCTTGCGATACACAGAAGGTTTATGTTGGGTGATGAACTATTATTATGAAGGGGTTTGTTCATGGGAGTGGTTTTATCCCTATCATTATGCACCCTTTGCTTCTGATCTCAAGGACCTAGGTCAGCTAAAGATAAGCTTCAATTTGGGCACTCCCTTTAAACCCTTCAATCAGCTGTTGGGGGTTTTCCCAGCTGCAAGCGCCCATGCCCTTCCGGAACAATACAGAAAGTTAATGACTGATCCAGACTCGCCTATTATTGACTTTTACCCTACTAACTTTGAAGTGGATATGAATGGGAAACGGTATGCATGGCAGGGTATTGCAAAATTGCCGTTCATTGACCAAGGTCGTCTTCTTTCTGAGGTCGAGAAAATTGAACACACATTGACAGAGGAGGAAACCCGGAGAAACTCCATGATGTTTGAGATGCTCTTTGTTTCATCTTCTCATCCTCTCTCTGTATGCATATACCTTCTTGACGATTGTTGCAGACATTTGACAGACAAAGATCGAGTTGAGGTTAAGGAACAAATTGATCCCAAATACAGTGAAGGGATGAATGGTTATCTGTCTTCATGTGCCGGAGAGTCTTGTCCTCCTGTTTTTCGGTCTCCTGTTAAATGCATGGAGGATATCATGGACAACCAAGTCATCTGCGCAATATATAGCCTACCAGAAGTGCATAAGCATATAACTCGACCACCTGCAGGTGTTATTTTCCCCAAGAAGACTGTGATGGTGGGGGATCTGAAGCCTGCACCTGTTTTATGGCATGAAGATTCTGGGCGGAACCCTCCTGGAACCACTTTGCAAAGACAGCTTGGGGATGCCGCACATCGACTGGTTGTTAATAGCTTACAGCAGGTGAAGGTAGACAACATTAGCTATGGCAATCAAATGCAGGCGGGGCTTCGGCCTCAATATTACCCACCACATCCTTTGTACAATGATCAGGGACTACTTGGAATGCCACTACCTAGAACATTTCAGCATCCTCAAGGTCAGCACTACCGAAATTCAAGTTTCACTAGTGATCGGCATTCATCATCAGCTGTGTATAACGCTCAGAATAGGTCTCCTTCTCAACATCATGACAGGGGTTCTGGGCACGCTTACTATCATCAATCAGGAAGGCATCAGAATGGTGGGCTCATTTACCCTCAGATACCTATTACACAAGCTCCTTCAGGGTTGAGACCTGGTCCTTCTCAAGGTGTTTATAACAAGTATCAGAGTTACCAGCCATCTGGAGTTATCAAAGATTTTGATGGCCGGATTCTAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

992

Amino Acids

113.05

Weight (kDa)

6.16

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 253	3.9e-102	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	331 - 813	1.4e-167	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2913
AarI	CACCTGC	3 cut(s)	2390, 2404, 2545
AasI	GACNNNNNNGTC	1 cut(s)	2339
Acc16I	TGCGCA	1 cut(s)	2350
Acc36I	ACCTGC	3 cut(s)	2390, 2404, 2545
Acc65I	GGTACC	1 cut(s)	881
AccB1I	GGYRCC	1 cut(s)	881
AccI	GTMKAC	2 cut(s)	1113, 2565
AccII	CGCG	4 cut(s)	374, 383, 676, 1367
AccIII	TCCGGA	1 cut(s)	1903
AclWI	GGATC	5 cut(s)	548, 659, 1925, 2222, 2445
AcoI	YGGCCR	4 cut(s)	278, 300, 900, 2962
AcsI	RAATTY	3 cut(s)	1124, 1168, 2707
AcuI	CTGAAG	4 cut(s)	411, 1335, 2462, 2862
AdeI	CACNNNGTG	1 cut(s)	1139
AfaI	GTAC	7 cut(s)	291, 296, 527, 883, 914, 1483, 2636
AfiI	CCNNNNNNNGG	4 cut(s)	608, 757, 2399, 2903
AflIII	ACRYGT	1 cut(s)	674
AhlI	ACTAGT	1 cut(s)	2720
AjnI	CCWGG	6 cut(s)	484, 556, 655, 1609, 2488, 2890
AjuI	GAANNNNNNNTTGG	2 cut(s)	2028, 2060
Alw21I	GWGCWC	1 cut(s)	1240
Alw26I	GTCTC	3 cut(s)	2307, 2772, 2881
AlwI	GGATC	5 cut(s)	548, 659, 1925, 2222, 2445
Aor13HI	TCCGGA	1 cut(s)	1903
AoxI	GGCC	6 cut(s)	203, 278, 300, 900, 2606, 2962
ApeKI	GCWGC	3 cut(s)	362, 1454, 1883
ApoI	RAATTY	3 cut(s)	1124, 1168, 2707
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
Asp700I	GAANNNNTTC	1 cut(s)	1674
Asp718I	GGTACC	1 cut(s)	881
AspA2I	CCTAGG	2 cut(s)	320, 1807
AspLEI	GCGC	4 cut(s)	1005, 1369, 1892, 2351
AspS9I	GGNCC	3 cut(s)	1355, 1804, 2894
AsuC2I	CCSGG	2 cut(s)	603, 2095
AsuHPI	GGTGA	5 cut(s)	182, 617, 851, 1732, 2569
AvaII	GGWCC	3 cut(s)	1355, 1804, 2894
AvrII	CCTAGG	2 cut(s)	320, 1807
AxyI	CCTNAGG	1 cut(s)	195
BaeGI	GKGCMC	2 cut(s)	1841, 2802
BalI	TGGCCA	2 cut(s)	302, 902
BanI	GGYRCC	1 cut(s)	881
BanII	GRGCYC	2 cut(s)	1240, 2844
BbsI	GAAGAC	6 cut(s)	632, 1221, 1593, 2036, 2256, 2426
Bbv12I	GWGCWC	1 cut(s)	1240
BbvCI	CCTCAGC	1 cut(s)	891
BbvI	GCAGC	3 cut(s)	349, 1441, 1870
BceAI	ACGGC	2 cut(s)	895, 2008
BcgI	CGANNNNNNTGC	2 cut(s)	2369, 2403
BciT130I	CCWGG	6 cut(s)	486, 558, 657, 1611, 2490, 2892
BciVI	GTATCC	1 cut(s)	51
BclI	TGATCA	1 cut(s)	2641
BcnI	CCSGG	2 cut(s)	603, 2095
BcoDI	GTCTC	3 cut(s)	2307, 2772, 2881
BcuI	ACTAGT	1 cut(s)	2720
BfaI	CTAG	7 cut(s)	321, 1386, 1808, 2670, 2721, 2972, 2977
BfmI	CTRYAG	2 cut(s)	19, 2397
BfoI	RGCGCY	1 cut(s)	1893
BfuAI	ACCTGC	3 cut(s)	2390, 2404, 2545
BfuI	GTATCC	1 cut(s)	51
BglI	GCCNNNNNGGC	1 cut(s)	323
BlnI	CCTAGG	2 cut(s)	320, 1807
BmcAI	AGTACT	2 cut(s)	527, 1483
Bme1390I	CCNGG	8 cut(s)	486, 558, 603, 657, 1611, 2095, 2490, 2892
Bme18I	GGWCC	3 cut(s)	1355, 1804, 2894
BmgT120I	GGNCC	3 cut(s)	1355, 1804, 2894
BmiI	GGNNCC	5 cut(s)	9, 75, 883, 2483, 2494
BmrFI	CCNGG	8 cut(s)	486, 558, 603, 657, 1611, 2095, 2490, 2892
BmrI	ACTGGG	1 cut(s)	1145
BmuI	ACTGGG	1 cut(s)	1145
BoxI	GACNNNNGTC	2 cut(s)	1809, 2037
BpiI	GAAGAC	6 cut(s)	632, 1221, 1593, 2036, 2256, 2426
BpmI	CTGGAG	2 cut(s)	1094, 2961
Bpu10I	CCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	5 cut(s)	158, 1019, 1784, 2673, 2886
BpuMI	CCSGG	2 cut(s)	603, 2095
Bsa29I	ATCGAT	1 cut(s)	1327
BsaBI	GATNNNNATC	2 cut(s)	855, 870
BsaI	GGTCTC	3 cut(s)	2307, 2772, 2881
BsaJI	CCNNGG	5 cut(s)	320, 1278, 1434, 1807, 2035
BsaWI	WCCGGW	2 cut(s)	103, 1903
BsaXI	ACNNNNNCTCC	2 cut(s)	2857, 2887
Bsc4I	CCNNNNNNNGG	4 cut(s)	608, 757, 2399, 2903
Bse1I	ACTGG	4 cut(s)	885, 916, 1140, 2538
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	2 cut(s)	518, 679
Bse8I	GATNNNNATC	2 cut(s)	855, 870
BseAI	TCCGGA	1 cut(s)	1903
BseBI	CCWGG	6 cut(s)	486, 558, 657, 1611, 2490, 2892
BseCI	ATCGAT	1 cut(s)	1327
BseDI	CCNNGG	5 cut(s)	320, 1278, 1434, 1807, 2035
BseJI	GATNNNNATC	2 cut(s)	855, 870
BseLI	CCNNNNNNNGG	4 cut(s)	608, 757, 2399, 2903
BseMI	GCAATG	2 cut(s)	518, 679
BseMII	CTCAG	7 cut(s)	186, 882, 1461, 1670, 2043, 2771, 2867
BseNI	ACTGG	4 cut(s)	885, 916, 1140, 2538
BseRI	GAGGAG	4 cut(s)	83, 364, 425, 2099
BseSI	GKGCMC	2 cut(s)	1841, 2802
BseX3I	CGGCCG	1 cut(s)	278
BseXI	GCAGC	3 cut(s)	349, 1441, 1870
BseYI	CCCAGC	1 cut(s)	1879
BsgI	GTGCAG	2 cut(s)	756, 2433
Bsh1236I	CGCG	4 cut(s)	374, 383, 676, 1367
Bsh1285I	CGRYCG	1 cut(s)	281
BshFI	GGCC	6 cut(s)	205, 280, 302, 902, 2608, 2964
BshNI	GGYRCC	1 cut(s)	881
BshVI	ATCGAT	1 cut(s)	1327
BsiEI	CGRYCG	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	1240
BsiSI	CCGG	7 cut(s)	11, 104, 602, 1904, 2095, 2274, 2965
BslFI	GGGAC	1 cut(s)	2661
BslI	CCNNNNNNNGG	4 cut(s)	608, 757, 2399, 2903
BsmAI	GTCTC	3 cut(s)	2307, 2772, 2881
BsmFI	GGGAC	1 cut(s)	2661
BsmI	GAATGC	2 cut(s)	2664, 2731
BsnI	GGCC	6 cut(s)	205, 280, 302, 902, 2608, 2964
Bso31I	GGTCTC	3 cut(s)	2307, 2772, 2881
Bsp1286I	GDGCHC	4 cut(s)	1240, 1841, 2802, 2844
Bsp13I	TCCGGA	1 cut(s)	1903
Bsp1407I	TGTACA	2 cut(s)	294, 2634
BspANI	GGCC	6 cut(s)	205, 280, 302, 902, 2608, 2964
BspCNI	CTCAG	7 cut(s)	187, 883, 1462, 1669, 2044, 2770, 2866
BspDI	ATCGAT	1 cut(s)	1327
BspEI	TCCGGA	1 cut(s)	1903
BspFNI	CGCG	4 cut(s)	374, 383, 676, 1367
BspHI	TCATGA	1 cut(s)	2782
BspLI	GGNNCC	5 cut(s)	9, 75, 883, 2483, 2494
BspMAI	CTGCAG	1 cut(s)	2401
BspMI	ACCTGC	3 cut(s)	2390, 2404, 2545
BspPI	GGATC	5 cut(s)	548, 659, 1925, 2222, 2445
BspT107I	GGYRCC	1 cut(s)	881
BspTNI	GGTCTC	3 cut(s)	2307, 2772, 2881
BsrDI	GCAATG	2 cut(s)	518, 679
BsrGI	TGTACA	2 cut(s)	294, 2634
BsrI	ACTGG	4 cut(s)	885, 916, 1140, 2538
BssECI	CCNNGG	5 cut(s)	320, 1278, 1434, 1807, 2035
BssNAI	GTATAC	1 cut(s)	1114
BssT1I	CCWWGG	4 cut(s)	320, 1278, 1807, 2035
Bst1107I	GTATAC	1 cut(s)	1114
Bst2UI	CCWGG	6 cut(s)	486, 558, 657, 1611, 2490, 2892
Bst4CI	ACNGT	6 cut(s)	134, 294, 1380, 1995, 2240, 2425
Bst6I	CTCTTC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	1787
BstAUI	TGTACA	2 cut(s)	294, 2634
BstC8I	GCNNGC	9 cut(s)	717, 1163, 1257, 1275, 1423, 1888, 2448, 2595, 2802
BstDEI	CTNAG	9 cut(s)	195, 539, 891, 938, 1470, 1656, 2052, 2757, 2853
BstENI	CCTNNNNNAGG	2 cut(s)	755, 2901
BstFNI	CGCG	4 cut(s)	374, 383, 676, 1367
BstH2I	RGCGCY	1 cut(s)	1893
BstHHI	GCGC	4 cut(s)	1005, 1369, 1892, 2351
BstMAI	GTCTC	3 cut(s)	2307, 2772, 2881
BstMCI	CGRYCG	1 cut(s)	281
BstNI	CCWGG	6 cut(s)	486, 558, 657, 1611, 2490, 2892
BstNSI	RCATGY	1 cut(s)	244
BstPAI	GACNNNNGTC	2 cut(s)	1809, 2037
BstSCI	CCNGG	8 cut(s)	484, 556, 601, 655, 1609, 2093, 2488, 2890
BstSFI	CTRYAG	2 cut(s)	19, 2397
BstSLI	GKGCMC	2 cut(s)	1841, 2802
BstUI	CGCG	4 cut(s)	374, 383, 676, 1367
BstV1I	GCAGC	3 cut(s)	349, 1441, 1870
BstV2I	GAAGAC	6 cut(s)	632, 1221, 1593, 2036, 2256, 2426
BstX2I	RGATCY	1 cut(s)	2437
BstXI	CCANNNNNNTGG	1 cut(s)	2939
BstYI	RGATCY	1 cut(s)	2437
BstZ17I	GTATAC	1 cut(s)	1114
BstZI	CGGCCG	1 cut(s)	278
Bsu15I	ATCGAT	1 cut(s)	1327
Bsu36I	CCTNAGG	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	6 cut(s)	205, 280, 302, 902, 2608, 2964
BsuTUI	ATCGAT	1 cut(s)	1327
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	5 cut(s)	242, 768, 892, 1133, 2245
BveI	ACCTGC	3 cut(s)	2390, 2404, 2545
Cac8I	GCNNGC	9 cut(s)	717, 1163, 1257, 1275, 1423, 1888, 2448, 2595, 2802
CciI	TCATGA	1 cut(s)	2782
CfoI	GCGC	4 cut(s)	1005, 1369, 1892, 2351
Cfr13I	GGNCC	3 cut(s)	1355, 1804, 2894
ClaI	ATCGAT	1 cut(s)	1327
CseI	GACGC	3 cut(s)	380, 389, 665
CsiI	ACCWGGT	1 cut(s)	2890
Csp6I	GTAC	7 cut(s)	290, 295, 526, 882, 913, 1482, 2635
CspCI	CAANNNNNGTGG	2 cut(s)	2613, 2648
CviQI	GTAC	7 cut(s)	290, 295, 526, 882, 913, 1482, 2635
DdeI	CTNAG	9 cut(s)	195, 539, 891, 938, 1470, 1656, 2052, 2757, 2853
DraI	TTTAAA	2 cut(s)	1521, 1849
DraIII	CACNNNGTG	1 cut(s)	1139
DrdI	GACNNNNNNGTC	1 cut(s)	2339
DseDI	GACNNNNNNGTC	1 cut(s)	2339
EaeI	YGGCCR	4 cut(s)	278, 300, 900, 2962
EagI	CGGCCG	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
EciI	GGCGGA	3 cut(s)	392, 429, 2494
Ecl136II	GAGCTC	1 cut(s)	1238
EclXI	CGGCCG	1 cut(s)	278
Eco130I	CCWWGG	4 cut(s)	320, 1278, 1807, 2035
Eco24I	GRGCYC	2 cut(s)	1240, 2844
Eco31I	GGTCTC	3 cut(s)	2307, 2772, 2881
Eco32I	GATATC	2 cut(s)	1145, 2326
Eco47I	GGWCC	3 cut(s)	1355, 1804, 2894
Eco52I	CGGCCG	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	1238
Eco57I	CTGAAG	4 cut(s)	411, 1335, 2462, 2862
Eco81I	CCTNAGG	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	1238
EcoNI	CCTNNNNNAGG	2 cut(s)	755, 2901
EcoO109I	RGGNCCY	2 cut(s)	1355, 1804
EcoRII	CCWGG	6 cut(s)	484, 556, 655, 1609, 2488, 2890
EcoRV	GATATC	2 cut(s)	1145, 2326
EcoT14I	CCWWGG	4 cut(s)	320, 1278, 1807, 2035
EcoT22I	ATGCAT	3 cut(s)	2002, 2159, 2318
EcoT38I	GRGCYC	2 cut(s)	1240, 2844
ErhI	CCWWGG	4 cut(s)	320, 1278, 1807, 2035
FalI	AAGNNNNNCTT	8 cut(s)	387, 419, 1527, 1559, 1811, 1843, 2028, 2060
FaqI	GGGAC	1 cut(s)	2661
FauI	CCCGC	2 cut(s)	1372, 2590
FauNDI	CATATG	1 cut(s)	1062
FbaI	TGATCA	1 cut(s)	2641
FblI	GTMKAC	2 cut(s)	1113, 2565
FriOI	GRGCYC	2 cut(s)	1240, 2844
FspBI	CTAG	7 cut(s)	321, 1386, 1808, 2670, 2721, 2972, 2977
FspI	TGCGCA	1 cut(s)	2350
GlaI	GCGC	4 cut(s)	1004, 1368, 1891, 2350
GsaI	CCCAGC	1 cut(s)	1883
GsuI	CTGGAG	2 cut(s)	1094, 2961
HaeII	RGCGCY	1 cut(s)	1893
HaeIII	GGCC	6 cut(s)	205, 280, 302, 902, 2608, 2964
HapII	CCGG	7 cut(s)	11, 104, 602, 1904, 2095, 2274, 2965
HgaI	GACGC	3 cut(s)	380, 389, 665
HhaI	GCGC	4 cut(s)	1005, 1369, 1892, 2351
Hin6I	GCGC	4 cut(s)	1003, 1367, 1890, 2349
HinP1I	GCGC	4 cut(s)	1003, 1367, 1890, 2349
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	3 cut(s)	401, 434, 1825
HpaII	CCGG	7 cut(s)	11, 104, 602, 1904, 2095, 2274, 2965
HphI	GGTGA	5 cut(s)	182, 617, 851, 1732, 2569
Hpy166II	GTNNAC	3 cut(s)	109, 1114, 2566
Hpy8I	GTNNAC	3 cut(s)	109, 1114, 2566
Hpy99I	CGWCG	1 cut(s)	217
HpyCH4III	ACNGT	6 cut(s)	134, 294, 1380, 1995, 2240, 2425
HpyCH4IV	ACGT	1 cut(s)	1666
HpyF3I	CTNAG	9 cut(s)	195, 539, 891, 938, 1470, 1656, 2052, 2757, 2853
HpySE526I	ACGT	1 cut(s)	1666
HspAI	GCGC	4 cut(s)	1003, 1367, 1890, 2349
Kpn2I	TCCGGA	1 cut(s)	1903
KpnI	GGTACC	1 cut(s)	885
Ksp22I	TGATCA	1 cut(s)	2641
LmnI	GCTCC	3 cut(s)	604, 1183, 2878
Lsp1109I	GCAGC	3 cut(s)	349, 1441, 1870
MabI	ACCWGGT	1 cut(s)	2890
MaeI	CTAG	7 cut(s)	321, 1386, 1808, 2670, 2721, 2972, 2977
MaeII	ACGT	1 cut(s)	1666
MaeIII	GTNAC	1 cut(s)	2927
MfeI	CAATTG	1 cut(s)	1241
MflI	RGATCY	1 cut(s)	2437
MhlI	GDGCHC	4 cut(s)	1240, 1841, 2802, 2844
MlsI	TGGCCA	2 cut(s)	302, 902
MluI	ACGCGT	1 cut(s)	674
MluNI	TGGCCA	2 cut(s)	302, 902
MlyI	GAGTC	5 cut(s)	217, 928, 1183, 1931, 2288
MmeI	TCCRAC	2 cut(s)	236, 1021
Mox20I	TGGCCA	2 cut(s)	302, 902
Mph1103I	ATGCAT	3 cut(s)	2002, 2159, 2318
MroI	TCCGGA	1 cut(s)	1903
MroXI	GAANNNNTTC	1 cut(s)	1674
MscI	TGGCCA	2 cut(s)	302, 902
MslI	CAYNNNNRTG	3 cut(s)	864, 1756, 2832
Msp20I	TGGCCA	2 cut(s)	302, 902
MspA1I	CMGCKG	4 cut(s)	1252, 1864, 1883, 2744
MspI	CCGG	7 cut(s)	11, 104, 602, 1904, 2095, 2274, 2965
MspR9I	CCNGG	8 cut(s)	486, 558, 603, 657, 1611, 2095, 2490, 2892
MunI	CAATTG	1 cut(s)	1241
Mva1269I	GAATGC	2 cut(s)	2664, 2731
MvaI	CCWGG	6 cut(s)	486, 558, 657, 1611, 2490, 2892
MvnI	CGCG	4 cut(s)	374, 383, 676, 1367
NciI	CCSGG	2 cut(s)	603, 2095
NdeI	CATATG	1 cut(s)	1062
NlaIV	GGNNCC	5 cut(s)	9, 75, 883, 2483, 2494
NmeAIII	GCCGAG	2 cut(s)	231, 306
NsbI	TGCGCA	1 cut(s)	2350
NsiI	ATGCAT	3 cut(s)	2002, 2159, 2318
NspI	RCATGY	1 cut(s)	244
PagI	TCATGA	1 cut(s)	2782
PaqCI	CACCTGC	3 cut(s)	2390, 2404, 2545
PcsI	WCGNNNNNNNCGW	1 cut(s)	1183
PctI	GAATGC	2 cut(s)	2664, 2731
PdmI	GAANNNNTTC	1 cut(s)	1674
PfeI	GAWTC	9 cut(s)	100, 334, 467, 1078, 1154, 1307, 1540, 2471, 2968
PflFI	GACNNNGTC	1 cut(s)	2892
PfoI	TCCNGGA	3 cut(s)	484, 556, 2488
PleI	GAGTC	5 cut(s)	216, 928, 1182, 1931, 2287
PpsI	GAGTC	5 cut(s)	216, 928, 1182, 1931, 2287
PpuMI	RGGWCCY	2 cut(s)	1355, 1804
PshAI	GACNNNNGTC	2 cut(s)	1809, 2037
PsiI	TTATAA	1 cut(s)	2913
Psp124BI	GAGCTC	1 cut(s)	1240
Psp5II	RGGWCCY	2 cut(s)	1355, 1804
Psp6I	CCWGG	6 cut(s)	484, 556, 655, 1609, 2488, 2890
PspFI	CCCAGC	1 cut(s)	1879
PspGI	CCWGG	6 cut(s)	484, 556, 655, 1609, 2488, 2890
PspN4I	GGNNCC	5 cut(s)	9, 75, 883, 2483, 2494
PspPI	GGNCC	3 cut(s)	1355, 1804, 2894
PspPPI	RGGWCCY	2 cut(s)	1355, 1804
PstI	CTGCAG	1 cut(s)	2401
PsuI	RGATCY	1 cut(s)	2437
PsyI	GACNNNGTC	1 cut(s)	2892
PvuII	CAGCTG	3 cut(s)	1864, 1883, 2744
RsaI	GTAC	7 cut(s)	291, 296, 527, 883, 914, 1483, 2636
RsaNI	GTAC	7 cut(s)	290, 295, 526, 882, 913, 1482, 2635
RseI	CAYNNNNRTG	3 cut(s)	864, 1756, 2832
SacI	GAGCTC	1 cut(s)	1240
Sau96I	GGNCC	3 cut(s)	1355, 1804, 2894
SbfI	CCTGCAGG	1 cut(s)	2401
ScaI	AGTACT	2 cut(s)	527, 1483
SchI	GAGTC	5 cut(s)	217, 928, 1183, 1931, 2288
ScrFI	CCNGG	8 cut(s)	486, 558, 603, 657, 1611, 2095, 2490, 2892
SdaI	CCTGCAGG	1 cut(s)	2401
SduI	GDGCHC	4 cut(s)	1240, 1841, 2802, 2844
SexAI	ACCWGGT	1 cut(s)	2890
SfcI	CTRYAG	2 cut(s)	19, 2397
SinI	GGWCC	3 cut(s)	1355, 1804, 2894
SmiMI	CAYNNNNRTG	3 cut(s)	864, 1756, 2832
SmlI	CTYRAG	5 cut(s)	137, 998, 1799, 2688, 2901
SmoI	CTYRAG	5 cut(s)	137, 998, 1799, 2688, 2901
SpeI	ACTAGT	1 cut(s)	2720
Sse8387I	CCTGCAGG	1 cut(s)	2401
SspI	AATATT	4 cut(s)	947, 970, 1224, 2615
SspMI	CTAG	7 cut(s)	321, 1386, 1808, 2670, 2721, 2972, 2977
SstI	GAGCTC	1 cut(s)	1240
StyD4I	CCNGG	8 cut(s)	484, 556, 601, 655, 1609, 2093, 2488, 2890
StyI	CCWWGG	4 cut(s)	320, 1278, 1807, 2035
TaaI	ACNGT	6 cut(s)	134, 294, 1380, 1995, 2240, 2425
TaiI	ACGT	1 cut(s)	1669
TaqI	TCGA	7 cut(s)	98, 347, 1327, 2058, 2203, 2389, 2530
TaqII	GACCGA	1 cut(s)	2289
TatI	WGTACW	4 cut(s)	294, 525, 1481, 2634
TauI	GCSGC	7 cut(s)	280, 377, 386, 389, 821, 1255, 2525
TfiI	GAWTC	9 cut(s)	100, 334, 467, 1078, 1154, 1307, 1540, 2471, 2968
TscAI	CASTG	5 cut(s)	242, 775, 892, 1140, 2245
TseI	GCWGC	3 cut(s)	362, 1454, 1883
TspRI	CASTG	5 cut(s)	242, 775, 892, 1140, 2245
Tth111I	GACNNNGTC	1 cut(s)	2892
VpaK11BI	GGWCC	3 cut(s)	1355, 1804, 2894
XagI	CCTNNNNNAGG	2 cut(s)	755, 2901
XapI	RAATTY	3 cut(s)	1124, 1168, 2707
XbaI	TCTAGA	2 cut(s)	1385, 2971
XceI	RCATGY	1 cut(s)	244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	892
XmaJI	CCTAGG	2 cut(s)	320, 1807
XmiI	GTMKAC	2 cut(s)	1113, 2565
XmnI	GAANNNNTTC	1 cut(s)	1674
XspI	CTAG	7 cut(s)	321, 1386, 1808, 2670, 2721, 2972, 2977
ZrmI	AGTACT	2 cut(s)	527, 1483
Zsp2I	ATGCAT	3 cut(s)	2002, 2159, 2318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.