Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041627.1

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Forward (+)

13 .. 1507

Gene Structure 1495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041627.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atggaggatataatggacaaccaagtcatatgtgcaatatacagactaccagatgtacacgagcatataactcgaccaccagcaggggtcattttccctaagaagattgtgtcatcgggggatatgaagcctgcacctgttttgtggcatgaggattcagggaggaagccatggcatgacaattcggggaggaggccatatgaaagttctagacagcaccctcctggagccatttctggaagacagcttggcgatgccgctcatcgacttgttgttaatagtttacatgttaaggcaaacggcaatgggtatggcaatcagatggctgcccatcaatcatatgccgaacctccatattacccaccacgggcttcctacgcaagtaatggaagctatgatcagggacaccacagtatggcaccacctagaacattccagcatcctcaagtgcaacaccaaaattcctaccaccctccgaatagacatcattctcaacattatgaaagaaattctggtcactcgtactctcagtcggcccgtcatcagaatggtggaattgcttacccccagagaccaattacaccagctccaccaggggtcaatccaggtccttatccagttggttataacaactatcagagttaccaacaagcagggccgcctggttatcaaggcattgatgcgtgggttccaccgccccaaaatatgggcagaggatatggtcgtcctcagcaatctggaaacccgtactctggattggacaggagaggaaataggagaccacctccatcccagcatggccgcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

269

Amino Acids

29.98

Weight (kDa)

9.75

Isoelectric Point (pI)

57.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AasI	GACNNNNNNGTC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	418
AccB7I	CCANNNNNTGG	2 cut(s)	415, 706
AccBSI	CCGCTC	1 cut(s)	260
AciI	CCGC	4 cut(s)	258, 659, 695, 802
AcoI	YGGCCR	1 cut(s)	799
AcsI	RAATTY	2 cut(s)	460, 508
AfaI	GTAC	3 cut(s)	57, 524, 749
AfiI	CCNNNNNNNGG	5 cut(s)	83, 367, 415, 706, 752
AflIII	ACRYGT	1 cut(s)	286
AjnI	CCWGG	4 cut(s)	223, 592, 604, 661
AluBI	AGCT	3 cut(s)	247, 393, 587
AluI	AGCT	3 cut(s)	247, 393, 587
Alw26I	GTCTC	2 cut(s)	565, 772
AoxI	GGCC	4 cut(s)	194, 534, 656, 799
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	2 cut(s)	460, 508
AspS9I	GGNCC	3 cut(s)	535, 608, 656
AvaII	GGWCC	1 cut(s)	608
BanI	GGYRCC	1 cut(s)	418
BauI	CACGAG	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	247
BbvCI	CCTCAGC	1 cut(s)	729
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	3 cut(s)	316, 339, 796
BceAI	ACGGC	1 cut(s)	316
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	4 cut(s)	225, 594, 606, 663
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	565, 772
BfaI	CTAG	2 cut(s)	210, 426
BisI	GCNGC	4 cut(s)	258, 327, 659, 802
BlsI	GCNGC	4 cut(s)	259, 328, 660, 803
Bme1390I	CCNGG	4 cut(s)	225, 594, 606, 663
Bme18I	GGWCC	1 cut(s)	608
BmgT120I	GGNCC	3 cut(s)	535, 608, 656
BmiI	GGNNCC	3 cut(s)	229, 420, 690
BmrFI	CCNGG	4 cut(s)	225, 594, 606, 663
BmsI	GCATC	3 cut(s)	244, 448, 670
BpiI	GAAGAC	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	769, 801
BpmI	CTGGAG	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	729
BpuEI	CTTGAG	1 cut(s)	429
BsaI	GGTCTC	2 cut(s)	565, 772
BsaJI	CCNNGG	3 cut(s)	170, 365, 593
BsaXI	ACNNNNNCTCC	2 cut(s)	571, 601
Bsc4I	CCNNNNNNNGG	5 cut(s)	83, 367, 415, 706, 752
Bse1I	ACTGG	1 cut(s)	617
Bse3DI	GCAATG	1 cut(s)	310
BseBI	CCWGG	4 cut(s)	225, 594, 606, 663
BseDI	CCNNGG	3 cut(s)	170, 365, 593
BseGI	GGATG	2 cut(s)	439, 788
BseLI	CCNNNNNNNGG	5 cut(s)	83, 367, 415, 706, 752
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	2 cut(s)	542, 743
BseNI	ACTGG	1 cut(s)	617
BseRI	GAGGAG	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	313
BseYI	CCCAGC	1 cut(s)	792
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	4 cut(s)	196, 536, 658, 801
BshNI	GGYRCC	1 cut(s)	418
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	5 cut(s)	83, 367, 415, 706, 752
BsmAI	GTCTC	2 cut(s)	565, 772
BsmFI	GGGAC	1 cut(s)	417
BsnI	GGCC	4 cut(s)	196, 536, 658, 801
Bso31I	GGTCTC	2 cut(s)	565, 772
Bsp1407I	TGTACA	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	397
Bsp19I	CCATGG	1 cut(s)	170
BspACI	CCGC	4 cut(s)	258, 659, 695, 802
BspANI	GGCC	4 cut(s)	196, 536, 658, 801
BspCNI	CTCAG	2 cut(s)	541, 742
BspLI	GGNNCC	3 cut(s)	229, 420, 690
BspT107I	GGYRCC	1 cut(s)	418
BspTNI	GGTCTC	2 cut(s)	565, 772
BsrBI	CCGCTC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	310
BsrGI	TGTACA	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	617
BssECI	CCNNGG	3 cut(s)	170, 365, 593
BssMI	GATC	1 cut(s)	397
BssSI	CACGAG	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	59
Bst2UI	CCWGG	4 cut(s)	225, 594, 606, 663
Bst4CI	ACNGT	1 cut(s)	413
BstAUI	TGTACA	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	3 cut(s)	99, 528, 729
BstDSI	CCRYGG	2 cut(s)	170, 365
BstF5I	GGATG	2 cut(s)	439, 788
BstKTI	GATC	1 cut(s)	400
BstMAI	GTCTC	2 cut(s)	565, 772
BstMBI	GATC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	4 cut(s)	225, 594, 606, 663
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	4 cut(s)	223, 592, 604, 661
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	247
BsuRI	GGCC	4 cut(s)	196, 536, 658, 801
BtgI	CCRYGG	2 cut(s)	170, 365
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	439, 788
Cac8I	GCNNGC	1 cut(s)	132
Cfr13I	GGNCC	3 cut(s)	535, 608, 656
Csp6I	GTAC	3 cut(s)	56, 523, 748
CviAII	CATG	5 cut(s)	149, 171, 176, 287, 797
CviQI	GTAC	3 cut(s)	56, 523, 748
DdeI	CTNAG	3 cut(s)	99, 528, 729
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	799
Eco130I	CCWWGG	1 cut(s)	170
Eco31I	GGTCTC	2 cut(s)	565, 772
Eco47I	GGWCC	1 cut(s)	608
EcoO109I	RGGNCCY	1 cut(s)	608
EcoRII	CCWGG	4 cut(s)	223, 592, 604, 661
EcoT14I	CCWWGG	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	5 cut(s)	152, 174, 179, 290, 800
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	5 cut(s)	148, 170, 175, 286, 796
FauNDI	CATATG	3 cut(s)	29, 199, 340
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	4 cut(s)	258, 327, 659, 802
FokI	GGATG	2 cut(s)	426, 775
Fsp4HI	GCNGC	4 cut(s)	258, 327, 659, 802
FspBI	CTAG	2 cut(s)	210, 426
GluI	GCNGC	4 cut(s)	258, 327, 659, 802
GsaI	CCCAGC	1 cut(s)	796
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	4 cut(s)	196, 536, 658, 801
Hin1II	CATG	5 cut(s)	152, 174, 179, 290, 800
HinfI	GANTC	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	58, 284
Hpy188I	TCNGA	4 cut(s)	321, 477, 546, 639
Hpy188III	TCNNGA	4 cut(s)	210, 237, 738, 753
Hpy8I	GTNNAC	2 cut(s)	58, 284
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4V	TGCA	3 cut(s)	35, 134, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	3 cut(s)	99, 528, 729
Hsp92II	CATG	5 cut(s)	152, 174, 179, 290, 800
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	397
LmnI	GCTCC	2 cut(s)	227, 592
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	3 cut(s)	244, 448, 670
MaeI	CTAG	2 cut(s)	210, 426
MaeIII	GTNAC	2 cut(s)	515, 641
MalI	GATC	1 cut(s)	399
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	1 cut(s)	397
MboII	GAAGA	2 cut(s)	115, 252
MluCI	AATT	5 cut(s)	181, 460, 508, 555, 576
MseI	TTAA	2 cut(s)	276, 291
MslI	CAYNNNNRTG	1 cut(s)	546
MspR9I	CCNGG	4 cut(s)	225, 594, 606, 663
MvaI	CCWGG	4 cut(s)	225, 594, 606, 663
MwoI	GCNNNNNNNGC	1 cut(s)	377
NcoI	CCATGG	1 cut(s)	170
NdeI	CATATG	3 cut(s)	29, 199, 340
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	5 cut(s)	152, 174, 179, 290, 800
NlaIV	GGNNCC	3 cut(s)	229, 420, 690
NmuCI	GTSAC	1 cut(s)	515
NspI	RCATGY	1 cut(s)	290
PciI	ACATGT	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	155
PflMI	CCANNNNNTGG	2 cut(s)	415, 706
PfoI	TCCNGGA	1 cut(s)	223
PkrI	GCNGC	4 cut(s)	259, 328, 660, 803
PpuMI	RGGWCCY	1 cut(s)	608
PscI	ACATGT	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	627
Psp5II	RGGWCCY	1 cut(s)	608
Psp6I	CCWGG	4 cut(s)	223, 592, 604, 661
PspFI	CCCAGC	1 cut(s)	792
PspGI	CCWGG	4 cut(s)	223, 592, 604, 661
PspN4I	GGNNCC	3 cut(s)	229, 420, 690
PspPI	GGNCC	3 cut(s)	535, 608, 656
PspPPI	RGGWCCY	1 cut(s)	608
RsaI	GTAC	3 cut(s)	57, 524, 749
RsaNI	GTAC	3 cut(s)	56, 523, 748
RseI	CAYNNNNRTG	1 cut(s)	546
SaqAI	TTAA	2 cut(s)	276, 291
SatI	GCNGC	4 cut(s)	258, 327, 659, 802
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	3 cut(s)	535, 608, 656
ScrFI	CCNGG	4 cut(s)	225, 594, 606, 663
SetI	ASST	8 cut(s)	139, 249, 352, 395, 427, 589, 610, 787
SfaNI	GCATC	3 cut(s)	244, 448, 670
SinI	GGWCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
Sse9I	AATT	5 cut(s)	181, 460, 508, 555, 576
SsiI	CCGC	4 cut(s)	258, 659, 695, 802
SspMI	CTAG	2 cut(s)	210, 426
StyD4I	CCNGG	4 cut(s)	223, 592, 604, 661
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	413
TaqI	TCGA	2 cut(s)	73, 265
TasI	AATT	5 cut(s)	181, 460, 508, 555, 576
TatI	WGTACW	1 cut(s)	55
TauI	GCSGC	3 cut(s)	260, 661, 804
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	2 cut(s)	276, 291
Tru9I	TTAA	2 cut(s)	276, 291
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	3 cut(s)	140, 216, 516
Van91I	CCANNNNNTGG	2 cut(s)	415, 706
VpaK11BI	GGWCC	1 cut(s)	608
XapI	RAATTY	2 cut(s)	460, 508
XbaI	TCTAGA	1 cut(s)	209
XceI	RCATGY	1 cut(s)	290
XspI	CTAG	2 cut(s)	210, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.