Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Forward (+)

6733988 .. 6737790

Gene Structure 3803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG078800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2979 bp

ATGGGGGTTCCGGCTTTCTATAGATGGTTAGCGGAGAAGTATCCGCTTGTGGTTGTAGATGTGGTGGAGGAGGAACCGGTTGTGATTGATGATGTTTCGATTCCGGTTGACACCACGAAACCGAACCCGAATGGTCTTGAGTTTGACAATCTTTACTTGGACATGAATGGGATTATTCATCCTTGTTTTCACCCTGAGGACAGGCCGAGTCCGACGACTTTTGATGAGGTGTTTCAGTGCATGTTTGAGTATATAGATAGGATTTTTGGGATGGTGCGGCCGAGAAAGGTACTGTACATGGCCATTGATGGTGTTGCCCCTAGGGCGAAGATGAATCAGCAGAGGTCGAGGAGGTTTAGGGCTGCGAAAGATGCGGCGGACGCGGCGGCTGAAGAAGAGAAGCTTCGTGAGGAGTTTGAAGCGGAGGGGAGGAAGCTTCCGCCAAAATTGCAGTCGCAAACTTTTGATTCCAATGTCATTACTCCTGGAACTCCTTTTATGGCTGTTTTATCAGTTGCATTGCAGTACTATATTCATCTTAGGTTAAATAATGATCCTGGATGGAAAAATGTTAAGGTTATCCTTTCTGATGCAAATGCTCCGGGTGAAGGGGAACACAAAATTATGTCATATATTCGTCTTCAACGAAACCTTCCTGGTTATGATCCAAATACGCGTCATTGCCTGTATGGTTTGGATGCCGATTTAATTATGCTGGCTATGGCTACACATGAAGTTCATTTTTCAATTCTGCGAGAGGTTGTTTTCACTGCCCAGCAAGACAAATGCTTCCTTTGTGGTCAGATGGGTCATTTAGCGGCAGATTGTGAAGGAAAGGCAAAACGAAAGGATGGAGATCAGCTTGATGATGATCAGAAAGGTACTGGTGCTGAGGTTGTGGCCAAGAAGCCGTACCAGTTTCTCAACATTTGGACTCTTAGAGAATATTTAGACTATGAGATGCGGAATATTCCCAATTCCCCATTTGAGATTGATCTTGAGCGCATTGTGGATGATTTCATATTCATTTGTTTTTTCGTTGGAAACGATTTCCTGCCACATATGCCTACTCTGGAGATTCGTGAGGGTGCAATCAACTTGCTTATGGCTGTATACAAAAAGGAATTTCATGCACTGGGTGGATATTTGACTGATTCAAGCAAGCTGAATTTGAGTCGGGTGGAGCATTTCATTCAGGCAGTTGGTTGTTATGAAGACAAAATATTCCAGAAACGAGCTCAATTGCATCAGCGGCAGGCACAAAGAATAAAGCGTGCCAAGGTGCAAGTTCCCCAAGTTCAGCCAGATTCTCTAGTTGCAGTTAATCGATTTCAAGGTTCTCGTCTTGCTTCAGGTCCTTCTCCTGCACCCTATCAACAGTATTGTAGATCATCTGGTAGAGGAAATCCTGAAAAAGTTGCACGCTTTTCTTCAGAGGCATCAAGTATTGGTGCTGCTATTGTTGAAGCTGAGAACAGCAGTACTCTAGATGTTGAAGTACATGAAAATAAAGAAGATTTAAAAGCAAAGCTCAAAGAGATTCTTCGCGAGAAATCTGATGCTTTTAACTCTAGAAATCCCCAAGAAGAAGACAACGTTAAATTGGGAGAACCTGGATGGAGGGATAGGTATTATGAAGAAAAGTTTGCTGCAAAAACTCAAGAAGAACGTGAAGCAGTTCGTAAAGATGTTATCTTGCGATACACGGAAGGCTTGTGTTGGGTGATGAACTATTATTATGAAGGGGTTTGTTCATGGGAGTGGTTTTACCCCTATCATTATGCACCCTTTGCTTCTGATCTCAAGGACCTAGGTCAGCTAAAGATAAGCTTCAATTTGGGCACTCCCTTTAAACCCTTCAATCAGCTGTTGGGGGTTTTCCCAGCTGCAAGCGCCCATGCCCTTCCTGAACAATACAGAAAGTTAATGACTGATCCAAACTCGCCTATTATTGACTTTTACCCTACTAACTTTGAAGTGGATATGAATGGGAAACGGTATGCATGGCAGGGTATTGCAAAATTGCCCTTCATTGACCAAGGTCGTCTTCTTTCTGAGGTTGAGAAAATTGAACACACATTGACAGAGGAGGAAACCCGGAGAAACTCCATGATGTTTGAGATGCTCTTTGTTTCATCTTCTCATCCTCTCTCTGTATGCATATACCTTCTTGACGATTGTTGTAGACAGTTGACAGACAAAGATCGAGTTGAGGTTAAGGAACAAATTGATCCCAAATACAGTGAAGGGATGAATGGTTATCTATCTTCATGTGCTGGAGAGTCTTGTCCTCCTGTTTTTCGGTCTCCTGTTAAATGCATGGAGGATATCATGGACAACCAAGTCATCTGTGCAATATATAGGCTGCCAGAAGTACATAAGCATATAACTCGACCGCCTGCAGGTGTTATTTTCCCCAAGAAGACTGTGACGGTGGGGGATCTGAAGCCTGCACCTGTTTTATGGCATGAAGATTCTGGGCGGAACCCCCTTGGAACCACTTCGCAAAGACAGCTTGGGGATGCCGCACATCGACTGGTTGTTAATAGCTTACAGGTGAAGGTAGACAACATTAGCTATGGCAATCAAATGCAGGCCCTTCGACCACTATCTCATGCGGGGCCTCAATATTACCCACCACACCCTTCGTACAATGATCAGGGACTACTTGGAATGCCACTACCTAGAACATTTCAGCATCCTCAAGGTCAGCACAACCGAAATTCAAGTTTCACTAGTGATCGGCATTCATCATCAGCTGTGTATAACGCTCAGAATAGGTCTCCTTCTCAACATCATGCCAGGGGTTCTGGGCACGCTTACTATCAATCAGGAAGGCATCAGAATGGTGGGCTCATTTACCCTCAGATACCTATTACACAAGCTCCTTCAGGTTTGAGACCTGGTCCTTCTCAAGGTGTTCATAACAAGTATCAGAGTAACCAGCCATCTGGAGCACCTCGTTATCAAAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

992

Amino Acids

112.83

Weight (kDa)

6.36

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 253	9e-102	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	331 - 814	5.6e-167	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2393
AasI	GACNNNNNNGTC	1 cut(s)	2342
Acc36I	ACCTGC	1 cut(s)	2393
AccI	GTMKAC	3 cut(s)	1113, 2185, 2565
AccII	CGCG	3 cut(s)	383, 676, 1548
AclI	AACGTT	1 cut(s)	1596
AclWI	GGATC	5 cut(s)	548, 659, 1928, 2225, 2448
AcoI	YGGCCR	3 cut(s)	278, 300, 900
AcsI	RAATTY	3 cut(s)	1124, 1168, 2722
AcuI	CTGAAG	5 cut(s)	411, 1335, 1416, 2465, 2874
AdeI	CACNNNGTG	1 cut(s)	1139
AfaI	GTAC	9 cut(s)	291, 296, 527, 883, 914, 1483, 1500, 2376, 2651
AfiI	CCNNNNNNNGG	3 cut(s)	608, 2402, 2915
AflIII	ACRYGT	1 cut(s)	674
AgeI	ACCGGT	1 cut(s)	76
AhlI	ACTAGT	1 cut(s)	2735
AjnI	CCWGG	6 cut(s)	484, 556, 655, 1612, 2801, 2902
AjuI	GAANNNNNNNTTGG	2 cut(s)	2031, 2063
Alw21I	GWGCWC	2 cut(s)	1240, 2959
Alw26I	GTCTC	3 cut(s)	2310, 2787, 2893
AlwI	GGATC	5 cut(s)	548, 659, 1928, 2225, 2448
AoxI	GGCC	6 cut(s)	203, 278, 300, 900, 2595, 2621
ApeKI	GCWGC	5 cut(s)	362, 1454, 1649, 1886, 2365
ApoI	RAATTY	3 cut(s)	1124, 1168, 2722
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AsiGI	ACCGGT	1 cut(s)	76
Asp700I	GAANNNNTTC	2 cut(s)	1677, 2500
AspA2I	CCTAGG	2 cut(s)	320, 1810
AspLEI	GCGC	2 cut(s)	1005, 1895
AspS9I	GGNCC	5 cut(s)	1355, 1807, 2596, 2621, 2906
AsuC2I	CCSGG	2 cut(s)	603, 2098
AsuHPI	GGTGA	4 cut(s)	182, 617, 1735, 2569
AvaII	GGWCC	3 cut(s)	1355, 1807, 2906
AvrII	CCTAGG	2 cut(s)	320, 1810
AxyI	CCTNAGG	1 cut(s)	195
BaeGI	GKGCMC	2 cut(s)	1844, 2817
BalI	TGGCCA	2 cut(s)	302, 902
BanII	GRGCYC	2 cut(s)	1240, 2856
BbsI	GAAGAC	5 cut(s)	632, 1221, 1596, 2039, 2429
Bbv12I	GWGCWC	2 cut(s)	1240, 2959
BbvCI	CCTCAGC	1 cut(s)	891
BbvI	GCAGC	5 cut(s)	349, 1441, 1636, 1873, 2352
BccI	CCATC	8 cut(s)	18, 265, 302, 555, 799, 845, 1611, 2956
BceAI	ACGGC	1 cut(s)	895
BcgI	CGANNNNNNTGC	4 cut(s)	2372, 2406, 2582, 2616
BciT130I	CCWGG	6 cut(s)	486, 558, 657, 1614, 2803, 2904
BciVI	GTATCC	1 cut(s)	51
BclI	TGATCA	2 cut(s)	871, 2656
BcnI	CCSGG	2 cut(s)	603, 2098
BcoDI	GTCTC	3 cut(s)	2310, 2787, 2893
BcuI	ACTAGT	1 cut(s)	2735
BfaI	CTAG	7 cut(s)	321, 1313, 1487, 1572, 1811, 2685, 2736
BfmI	CTRYAG	2 cut(s)	19, 2400
BfoI	RGCGCY	1 cut(s)	1896
BfuAI	ACCTGC	1 cut(s)	2393
BfuI	GTATCC	1 cut(s)	51
BglI	GCCNNNNNGGC	1 cut(s)	323
BlnI	CCTAGG	2 cut(s)	320, 1810
BmcAI	AGTACT	2 cut(s)	527, 1483
Bme1390I	CCNGG	8 cut(s)	486, 558, 603, 657, 1614, 2098, 2803, 2904
Bme18I	GGWCC	3 cut(s)	1355, 1807, 2906
BmgT120I	GGNCC	5 cut(s)	1355, 1807, 2596, 2621, 2906
BmiI	GGNNCC	5 cut(s)	9, 75, 2486, 2497, 2622
BmrFI	CCNGG	8 cut(s)	486, 558, 603, 657, 1614, 2098, 2803, 2904
BmrI	ACTGGG	1 cut(s)	1145
BmuI	ACTGGG	1 cut(s)	1145
BoxI	GACNNNNGTC	2 cut(s)	1812, 2040
BpiI	GAAGAC	5 cut(s)	632, 1221, 1596, 2039, 2429
BpmI	CTGGAG	3 cut(s)	1094, 2298, 2973
Bpu10I	CCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	6 cut(s)	158, 1019, 1644, 1787, 2688, 2898
BpuMI	CCSGG	2 cut(s)	603, 2098
Bsa29I	ATCGAT	1 cut(s)	1327
BsaBI	GATNNNNATC	2 cut(s)	855, 870
BsaI	GGTCTC	3 cut(s)	2310, 2787, 2893
BsaJI	CCNNGG	6 cut(s)	320, 1278, 1810, 2038, 2491, 2802
BsaWI	WCCGGW	2 cut(s)	76, 103
BsaXI	ACNNNNNCTCC	2 cut(s)	2869, 2899
Bsc4I	CCNNNNNNNGG	3 cut(s)	608, 2402, 2915
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	4 cut(s)	889, 916, 1140, 2541
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	2 cut(s)	518, 679
Bse8I	GATNNNNATC	2 cut(s)	855, 870
BseBI	CCWGG	6 cut(s)	486, 558, 657, 1614, 2803, 2904
BseCI	ATCGAT	1 cut(s)	1327
BseDI	CCNNGG	6 cut(s)	320, 1278, 1810, 2038, 2491, 2802
BseJI	GATNNNNATC	2 cut(s)	855, 870
BseLI	CCNNNNNNNGG	3 cut(s)	608, 2402, 2915
BseMI	GCAATG	2 cut(s)	518, 679
BseMII	CTCAG	6 cut(s)	186, 882, 1461, 2046, 2786, 2879
BseNI	ACTGG	4 cut(s)	889, 916, 1140, 2541
BseRI	GAGGAG	4 cut(s)	83, 364, 425, 2102
BseSI	GKGCMC	2 cut(s)	1844, 2817
BseX3I	CGGCCG	1 cut(s)	278
BseXI	GCAGC	5 cut(s)	349, 1441, 1636, 1873, 2352
BseYI	CCCAGC	2 cut(s)	774, 1882
BsgI	GTGCAG	2 cut(s)	1350, 2436
Bsh1236I	CGCG	3 cut(s)	383, 676, 1548
Bsh1285I	CGRYCG	2 cut(s)	281, 2396
BshFI	GGCC	6 cut(s)	205, 280, 302, 902, 2597, 2623
BshTI	ACCGGT	1 cut(s)	76
BshVI	ATCGAT	1 cut(s)	1327
BsiEI	CGRYCG	2 cut(s)	281, 2396
BsiHKAI	GWGCWC	2 cut(s)	1240, 2959
BsiSI	CCGG	5 cut(s)	11, 77, 104, 602, 2098
BslFI	GGGAC	1 cut(s)	2676
BslI	CCNNNNNNNGG	3 cut(s)	608, 2402, 2915
BsmAI	GTCTC	3 cut(s)	2310, 2787, 2893
BsmFI	GGGAC	1 cut(s)	2676
BsmI	GAATGC	2 cut(s)	2679, 2746
BsnI	GGCC	6 cut(s)	205, 280, 302, 902, 2597, 2623
Bso31I	GGTCTC	3 cut(s)	2310, 2787, 2893
Bsp1286I	GDGCHC	5 cut(s)	1240, 1844, 2817, 2856, 2959
Bsp1407I	TGTACA	1 cut(s)	294
Bsp68I	TCGCGA	1 cut(s)	1548
BspANI	GGCC	6 cut(s)	205, 280, 302, 902, 2597, 2623
BspCNI	CTCAG	6 cut(s)	187, 883, 1462, 2047, 2785, 2878
BspDI	ATCGAT	1 cut(s)	1327
BspFNI	CGCG	3 cut(s)	383, 676, 1548
BspLI	GGNNCC	5 cut(s)	9, 75, 2486, 2497, 2622
BspMAI	CTGCAG	1 cut(s)	2404
BspMI	ACCTGC	1 cut(s)	2393
BspPI	GGATC	5 cut(s)	548, 659, 1928, 2225, 2448
BspTNI	GGTCTC	3 cut(s)	2310, 2787, 2893
BsrDI	GCAATG	2 cut(s)	518, 679
BsrFI	RCCGGY	1 cut(s)	76
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	4 cut(s)	889, 916, 1140, 2541
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	6 cut(s)	320, 1278, 1810, 2038, 2491, 2802
BssNAI	GTATAC	1 cut(s)	1114
BssT1I	CCWWGG	5 cut(s)	320, 1278, 1810, 2038, 2491
Bst1107I	GTATAC	1 cut(s)	1114
Bst2UI	CCWGG	6 cut(s)	486, 558, 657, 1614, 2803, 2904
Bst4CI	ACNGT	7 cut(s)	294, 1380, 1998, 2190, 2243, 2428, 2434
Bst6I	CTCTTC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	1790
BstAUI	TGTACA	1 cut(s)	294
BstDEI	CTNAG	8 cut(s)	195, 539, 891, 938, 1470, 2055, 2772, 2865
BstENI	CCTNNNNNAGG	1 cut(s)	2913
BstFNI	CGCG	3 cut(s)	383, 676, 1548
BstH2I	RGCGCY	1 cut(s)	1896
BstHHI	GCGC	2 cut(s)	1005, 1895
BstMAI	GTCTC	3 cut(s)	2310, 2787, 2893
BstMCI	CGRYCG	2 cut(s)	281, 2396
BstNI	CCWGG	6 cut(s)	486, 558, 657, 1614, 2803, 2904
BstNSI	RCATGY	1 cut(s)	244
BstPAI	GACNNNNGTC	2 cut(s)	1812, 2040
BstSCI	CCNGG	8 cut(s)	484, 556, 601, 655, 1612, 2096, 2801, 2902
BstSFI	CTRYAG	2 cut(s)	19, 2400
BstSLI	GKGCMC	2 cut(s)	1844, 2817
BstUI	CGCG	3 cut(s)	383, 676, 1548
BstV1I	GCAGC	5 cut(s)	349, 1441, 1636, 1873, 2352
BstV2I	GAAGAC	5 cut(s)	632, 1221, 1596, 2039, 2429
BstX2I	RGATCY	1 cut(s)	2440
BstXI	CCANNNNNNTGG	1 cut(s)	2951
BstYI	RGATCY	1 cut(s)	2440
BstZ17I	GTATAC	1 cut(s)	1114
BstZI	CGGCCG	1 cut(s)	278
Bsu15I	ATCGAT	1 cut(s)	1327
Bsu36I	CCTNAGG	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	6 cut(s)	205, 280, 302, 902, 2597, 2623
BsuTUI	ATCGAT	1 cut(s)	1327
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	4 cut(s)	242, 768, 1133, 2248
BtuMI	TCGCGA	1 cut(s)	1548
BveI	ACCTGC	1 cut(s)	2393
CfoI	GCGC	2 cut(s)	1005, 1895
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	5 cut(s)	1355, 1807, 2596, 2621, 2906
ClaI	ATCGAT	1 cut(s)	1327
CseI	GACGC	2 cut(s)	389, 665
CsiI	ACCWGGT	1 cut(s)	2902
Csp6I	GTAC	9 cut(s)	290, 295, 526, 882, 913, 1482, 1499, 2375, 2650
CspAI	ACCGGT	1 cut(s)	76
CviQI	GTAC	9 cut(s)	290, 295, 526, 882, 913, 1482, 1499, 2375, 2650
DdeI	CTNAG	8 cut(s)	195, 539, 891, 938, 1470, 2055, 2772, 2865
DraI	TTTAAA	2 cut(s)	1521, 1852
DraIII	CACNNNGTG	1 cut(s)	1139
DrdI	GACNNNNNNGTC	1 cut(s)	2342
DseDI	GACNNNNNNGTC	1 cut(s)	2342
EaeI	YGGCCR	3 cut(s)	278, 300, 900
EagI	CGGCCG	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
EciI	GGCGGA	3 cut(s)	392, 429, 2497
Ecl136II	GAGCTC	1 cut(s)	1238
EclXI	CGGCCG	1 cut(s)	278
Eco130I	CCWWGG	5 cut(s)	320, 1278, 1810, 2038, 2491
Eco24I	GRGCYC	2 cut(s)	1240, 2856
Eco31I	GGTCTC	3 cut(s)	2310, 2787, 2893
Eco32I	GATATC	1 cut(s)	2329
Eco47I	GGWCC	3 cut(s)	1355, 1807, 2906
Eco52I	CGGCCG	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	1238
Eco57I	CTGAAG	5 cut(s)	411, 1335, 1416, 2465, 2874
Eco81I	CCTNAGG	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	1238
EcoNI	CCTNNNNNAGG	1 cut(s)	2913
EcoO109I	RGGNCCY	4 cut(s)	1355, 1807, 2596, 2621
EcoRII	CCWGG	6 cut(s)	484, 556, 655, 1612, 2801, 2902
EcoRV	GATATC	1 cut(s)	2329
EcoT14I	CCWWGG	5 cut(s)	320, 1278, 1810, 2038, 2491
EcoT22I	ATGCAT	3 cut(s)	2005, 2162, 2321
EcoT38I	GRGCYC	2 cut(s)	1240, 2856
ErhI	CCWWGG	5 cut(s)	320, 1278, 1810, 2038, 2491
FalI	AAGNNNNNCTT	8 cut(s)	387, 419, 1527, 1559, 1814, 1846, 2031, 2063
FaqI	GGGAC	1 cut(s)	2676
FauI	CCCGC	1 cut(s)	2611
FauNDI	CATATG	1 cut(s)	1062
FbaI	TGATCA	2 cut(s)	871, 2656
FblI	GTMKAC	3 cut(s)	1113, 2185, 2565
FriOI	GRGCYC	2 cut(s)	1240, 2856
FspBI	CTAG	7 cut(s)	321, 1313, 1487, 1572, 1811, 2685, 2736
GlaI	GCGC	2 cut(s)	1004, 1894
GsaI	CCCAGC	2 cut(s)	778, 1886
GsuI	CTGGAG	3 cut(s)	1094, 2298, 2973
HaeII	RGCGCY	1 cut(s)	1896
HaeIII	GGCC	6 cut(s)	205, 280, 302, 902, 2597, 2623
HapII	CCGG	5 cut(s)	11, 77, 104, 602, 2098
HgaI	GACGC	2 cut(s)	389, 665
HhaI	GCGC	2 cut(s)	1005, 1895
Hin6I	GCGC	2 cut(s)	1003, 1893
HinP1I	GCGC	2 cut(s)	1003, 1893
HincII	GTYRAC	2 cut(s)	109, 2193
HindII	GTYRAC	2 cut(s)	109, 2193
HindIII	AAGCTT	3 cut(s)	401, 434, 1828
HpaII	CCGG	5 cut(s)	11, 77, 104, 602, 2098
HphI	GGTGA	4 cut(s)	182, 617, 1735, 2569
Hpy166II	GTNNAC	5 cut(s)	109, 1114, 2186, 2193, 2566
Hpy8I	GTNNAC	5 cut(s)	109, 1114, 2186, 2193, 2566
Hpy99I	CGWCG	1 cut(s)	217
HpyCH4III	ACNGT	7 cut(s)	294, 1380, 1998, 2190, 2243, 2428, 2434
HpyCH4IV	ACGT	2 cut(s)	1596, 1669
HpyF3I	CTNAG	8 cut(s)	195, 539, 891, 938, 1470, 2055, 2772, 2865
HpySE526I	ACGT	2 cut(s)	1596, 1669
HspAI	GCGC	2 cut(s)	1003, 1893
Ksp22I	TGATCA	2 cut(s)	871, 2656
LmnI	GCTCC	4 cut(s)	604, 1183, 2890, 2954
Lsp1109I	GCAGC	5 cut(s)	349, 1441, 1636, 1873, 2352
MabI	ACCWGGT	1 cut(s)	2902
MaeI	CTAG	7 cut(s)	321, 1313, 1487, 1572, 1811, 2685, 2736
MaeII	ACGT	2 cut(s)	1596, 1669
MaeIII	GTNAC	2 cut(s)	2428, 2939
MfeI	CAATTG	1 cut(s)	1241
MflI	RGATCY	1 cut(s)	2440
MhlI	GDGCHC	5 cut(s)	1240, 1844, 2817, 2856, 2959
MlsI	TGGCCA	2 cut(s)	302, 902
MluI	ACGCGT	1 cut(s)	674
MluNI	TGGCCA	2 cut(s)	302, 902
MlyI	GAGTC	4 cut(s)	217, 928, 1183, 2291
MmeI	TCCRAC	2 cut(s)	236, 1021
Mox20I	TGGCCA	2 cut(s)	302, 902
Mph1103I	ATGCAT	3 cut(s)	2005, 2162, 2321
MroXI	GAANNNNTTC	2 cut(s)	1677, 2500
MscI	TGGCCA	2 cut(s)	302, 902
MslI	CAYNNNNRTG	2 cut(s)	1759, 2844
Msp20I	TGGCCA	2 cut(s)	302, 902
MspA1I	CMGCKG	4 cut(s)	1252, 1867, 1886, 2759
MspI	CCGG	5 cut(s)	11, 77, 104, 602, 2098
MspR9I	CCNGG	8 cut(s)	486, 558, 603, 657, 1614, 2098, 2803, 2904
MunI	CAATTG	1 cut(s)	1241
Mva1269I	GAATGC	2 cut(s)	2679, 2746
MvaI	CCWGG	6 cut(s)	486, 558, 657, 1614, 2803, 2904
MvnI	CGCG	3 cut(s)	383, 676, 1548
NciI	CCSGG	2 cut(s)	603, 2098
NdeI	CATATG	1 cut(s)	1062
NlaIV	GGNNCC	5 cut(s)	9, 75, 2486, 2497, 2622
NmeAIII	GCCGAG	2 cut(s)	231, 306
NmuCI	GTSAC	1 cut(s)	2428
NruI	TCGCGA	1 cut(s)	1548
NsiI	ATGCAT	3 cut(s)	2005, 2162, 2321
NspI	RCATGY	1 cut(s)	244
PaqCI	CACCTGC	1 cut(s)	2393
PcsI	WCGNNNNNNNCGW	2 cut(s)	643, 1044
PctI	GAATGC	2 cut(s)	2679, 2746
PdmI	GAANNNNTTC	2 cut(s)	1677, 2500
PfeI	GAWTC	8 cut(s)	100, 334, 467, 1078, 1154, 1307, 1540, 2474
PflFI	GACNNNGTC	1 cut(s)	2904
PfoI	TCCNGGA	2 cut(s)	484, 556
PinAI	ACCGGT	1 cut(s)	76
PleI	GAGTC	4 cut(s)	216, 928, 1182, 2290
PpsI	GAGTC	4 cut(s)	216, 928, 1182, 2290
PpuMI	RGGWCCY	2 cut(s)	1355, 1807
PshAI	GACNNNNGTC	2 cut(s)	1812, 2040
Psp124BI	GAGCTC	1 cut(s)	1240
Psp1406I	AACGTT	1 cut(s)	1596
Psp5II	RGGWCCY	2 cut(s)	1355, 1807
Psp6I	CCWGG	6 cut(s)	484, 556, 655, 1612, 2801, 2902
PspFI	CCCAGC	2 cut(s)	774, 1882
PspGI	CCWGG	6 cut(s)	484, 556, 655, 1612, 2801, 2902
PspN4I	GGNNCC	5 cut(s)	9, 75, 2486, 2497, 2622
PspPI	GGNCC	5 cut(s)	1355, 1807, 2596, 2621, 2906
PspPPI	RGGWCCY	2 cut(s)	1355, 1807
PstI	CTGCAG	1 cut(s)	2404
PsuI	RGATCY	1 cut(s)	2440
PsyI	GACNNNGTC	1 cut(s)	2904
PvuII	CAGCTG	3 cut(s)	1867, 1886, 2759
RruI	TCGCGA	1 cut(s)	1548
RsaI	GTAC	9 cut(s)	291, 296, 527, 883, 914, 1483, 1500, 2376, 2651
RsaNI	GTAC	9 cut(s)	290, 295, 526, 882, 913, 1482, 1499, 2375, 2650
RseI	CAYNNNNRTG	2 cut(s)	1759, 2844
SacI	GAGCTC	1 cut(s)	1240
Sau96I	GGNCC	5 cut(s)	1355, 1807, 2596, 2621, 2906
SbfI	CCTGCAGG	1 cut(s)	2404
ScaI	AGTACT	2 cut(s)	527, 1483
SchI	GAGTC	4 cut(s)	217, 928, 1183, 2291
ScrFI	CCNGG	8 cut(s)	486, 558, 603, 657, 1614, 2098, 2803, 2904
SdaI	CCTGCAGG	1 cut(s)	2404
SduI	GDGCHC	5 cut(s)	1240, 1844, 2817, 2856, 2959
SexAI	ACCWGGT	1 cut(s)	2902
SfcI	CTRYAG	2 cut(s)	19, 2400
SinI	GGWCC	3 cut(s)	1355, 1807, 2906
SmiMI	CAYNNNNRTG	2 cut(s)	1759, 2844
SmlI	CTYRAG	6 cut(s)	137, 998, 1659, 1802, 2703, 2913
SmoI	CTYRAG	6 cut(s)	137, 998, 1659, 1802, 2703, 2913
SpeI	ACTAGT	1 cut(s)	2735
Sse8387I	CCTGCAGG	1 cut(s)	2404
SspI	AATATT	4 cut(s)	947, 970, 1224, 2630
SspMI	CTAG	7 cut(s)	321, 1313, 1487, 1572, 1811, 2685, 2736
SstI	GAGCTC	1 cut(s)	1240
StyD4I	CCNGG	8 cut(s)	484, 556, 601, 655, 1612, 2096, 2801, 2902
StyI	CCWWGG	5 cut(s)	320, 1278, 1810, 2038, 2491
TaaI	ACNGT	7 cut(s)	294, 1380, 1998, 2190, 2243, 2428, 2434
TaiI	ACGT	2 cut(s)	1599, 1672
TaqI	TCGA	7 cut(s)	98, 347, 1327, 2206, 2392, 2533, 2602
TaqII	GACCGA	1 cut(s)	2292
TatI	WGTACW	5 cut(s)	294, 525, 1481, 1498, 2374
TauI	GCSGC	7 cut(s)	280, 377, 386, 389, 821, 1255, 2528
TfiI	GAWTC	8 cut(s)	100, 334, 467, 1078, 1154, 1307, 1540, 2474
TscAI	CASTG	4 cut(s)	242, 775, 1140, 2248
TseFI	GTSAC	1 cut(s)	2428
TseI	GCWGC	5 cut(s)	362, 1454, 1649, 1886, 2365
Tsp45I	GTSAC	1 cut(s)	2428
TspGWI	ACGGA	1 cut(s)	1721
TspRI	CASTG	4 cut(s)	242, 775, 1140, 2248
Tth111I	GACNNNGTC	1 cut(s)	2904
VpaK11BI	GGWCC	3 cut(s)	1355, 1807, 2906
XagI	CCTNNNNNAGG	1 cut(s)	2913
XapI	RAATTY	3 cut(s)	1124, 1168, 2722
XbaI	TCTAGA	2 cut(s)	1486, 1571
XceI	RCATGY	1 cut(s)	244
XmaJI	CCTAGG	2 cut(s)	320, 1810
XmiI	GTMKAC	3 cut(s)	1113, 2185, 2565
XmnI	GAANNNNTTC	2 cut(s)	1677, 2500
XspI	CTAG	7 cut(s)	321, 1313, 1487, 1572, 1811, 2685, 2736
ZrmI	AGTACT	2 cut(s)	527, 1483
Zsp2I	ATGCAT	3 cut(s)	2005, 2162, 2321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.