Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039989.1

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2037

Gene Structure 2037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039989.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgggagttccagctttctacagatggctagcggagaagtatccacttgtcgtcgtcgatgtggtggaagaagaaccggttgtaatcgacgaagtttcgattccggtcgacaccagtaagccaaatcctaacggcgagtatgacaatctgtacctcgacatgaatgggatcattcacccctgttttcaccctgaggataggccttcgccaactacctttgatgaggtatttcagtgcatgtttgactacatagataggctttttgtgatggtgcggcctcggaagctactgtacatggcaattgatggtgttgcccctagggcaaaaatgaatcaacagagatcccggcggtttagagctgctaaagatgcagcagatgcggcagctgaagaagaaaggctgcgtgaggagtttgaaatggagggaagaaagcttccacctaaactgcattcgcaaacttttgattccaatgtcattactcctggaactccatttatggctgttttgtcaattgcattgcagtactatattcatcttagattaaataacgatcctggatggaaaaatgttaaggtcattctttccgatgcaaatgttccgggtgaaggggagcacaaggttatgtcatacattcgtcttcaaagaaatcttcctggttatgatccaaatacacgtcattgcctgtatggtttggatgccgatttaattatgcttgccttggccacccatgaagttcatttctctattcttcgagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

252

Amino Acids

28.96

Weight (kDa)

5.42

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	4 cut(s)	32, 274, 349, 380
AclWI	GGATC	4 cut(s)	176, 336, 545, 656
AcoI	YGGCCR	1 cut(s)	720
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	3 cut(s)	152, 293, 524
AfiI	CCNNNNNNNGG	1 cut(s)	605
AflIII	ACRYGT	1 cut(s)	671
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	416, 641
AjiI	CACGTC	1 cut(s)	674
AjnI	CCWGG	3 cut(s)	481, 553, 652
AluBI	AGCT	5 cut(s)	14, 286, 359, 386, 433
AluI	AGCT	5 cut(s)	14, 286, 359, 386, 433
Alw21I	GWGCWC	1 cut(s)	615
AlwI	GGATC	4 cut(s)	176, 336, 545, 656
AoxI	GGCC	3 cut(s)	200, 275, 720
ApeKI	GCWGC	4 cut(s)	359, 371, 383, 400
AsiGI	ACCGGT	1 cut(s)	76
AspA2I	CCTAGG	1 cut(s)	317
AsuC2I	CCSGG	2 cut(s)	346, 600
AsuHPI	GGTGA	3 cut(s)	167, 179, 614
AsuNHI	GCTAGC	1 cut(s)	28
AvrII	CCTAGG	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	722
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BbsI	GAAGAC	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	4 cut(s)	346, 383, 387, 395
BccI	CCATC	4 cut(s)	18, 262, 299, 552
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	3 cut(s)	483, 555, 654
BciVI	GTATCC	1 cut(s)	51
BcnI	CCSGG	2 cut(s)	346, 600
BfaI	CTAG	2 cut(s)	29, 318
BfmI	CTRYAG	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	51
BglI	GCCNNNNNGGC	1 cut(s)	320
BisI	GCNGC	6 cut(s)	275, 360, 372, 381, 384, 401
BlnI	CCTAGG	1 cut(s)	317
BlsI	GCNGC	6 cut(s)	276, 361, 373, 382, 385, 402
BmcAI	AGTACT	1 cut(s)	524
Bme1390I	CCNGG	5 cut(s)	346, 483, 555, 600, 654
BmgBI	CACGTC	1 cut(s)	674
BmrFI	CCNGG	5 cut(s)	346, 483, 555, 600, 654
BmsI	GCATC	4 cut(s)	358, 367, 577, 685
BmtI	GCTAGC	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	629
BpuMI	CCSGG	2 cut(s)	346, 600
BsaJI	CCNNGG	3 cut(s)	278, 317, 717
BsaWI	WCCGGW	2 cut(s)	76, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	605
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	114
Bse21I	CCTNAGG	1 cut(s)	192
Bse3DI	GCAATG	2 cut(s)	515, 676
BseBI	CCWGG	3 cut(s)	483, 555, 654
BseDI	CCNNGG	3 cut(s)	278, 317, 717
BseGI	GGATG	2 cut(s)	563, 700
BseLI	CCNNNNNNNGG	1 cut(s)	605
BseMI	GCAATG	2 cut(s)	515, 676
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	4 cut(s)	346, 383, 387, 395
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	3 cut(s)	202, 277, 722
BshTI	ACCGGT	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	4 cut(s)	77, 104, 346, 599
BslI	CCNNNNNNNGG	1 cut(s)	605
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	202, 277, 722
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	168, 341, 550, 661
BspACI	CCGC	4 cut(s)	32, 274, 349, 380
BspANI	GGCC	3 cut(s)	202, 277, 722
BspCNI	CTCAG	1 cut(s)	184
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	4 cut(s)	176, 336, 545, 656
BsrDI	GCAATG	2 cut(s)	515, 676
BsrFI	RCCGGY	1 cut(s)	76
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	278, 317, 717
BssMI	GATC	4 cut(s)	168, 341, 550, 661
BssT1I	CCWWGG	2 cut(s)	317, 717
Bst2UI	CCWGG	3 cut(s)	483, 555, 654
Bst4CI	ACNGT	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstAUI	TGTACA	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	30, 714
BstDEI	CTNAG	2 cut(s)	192, 536
BstF5I	GGATG	2 cut(s)	563, 700
BstKTI	GATC	4 cut(s)	171, 344, 553, 664
BstMBI	GATC	4 cut(s)	168, 341, 550, 661
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	5 cut(s)	283, 320, 368, 377, 380
BstNI	CCWGG	3 cut(s)	483, 555, 654
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	5 cut(s)	344, 481, 553, 598, 652
BstSFI	CTRYAG	1 cut(s)	19
BstV1I	GCAGC	4 cut(s)	346, 383, 387, 395
BstV2I	GAAGAC	1 cut(s)	629
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
Bsu36I	CCTNAGG	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	202, 277, 722
BtrI	CACGTC	1 cut(s)	674
BtsCI	GGATG	2 cut(s)	563, 700
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	30, 714
Cfr10I	RCCGGY	1 cut(s)	76
Csp6I	GTAC	3 cut(s)	151, 292, 523
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	4 cut(s)	160, 238, 295, 728
CviQI	GTAC	3 cut(s)	151, 292, 523
DdeI	CTNAG	2 cut(s)	192, 536
DpnI	GATC	4 cut(s)	170, 343, 552, 663
DpnII	GATC	4 cut(s)	168, 341, 550, 661
EaeI	YGGCCR	1 cut(s)	720
Eco130I	CCWWGG	2 cut(s)	317, 717
Eco147I	AGGCCT	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	408
Eco81I	CCTNAGG	1 cut(s)	192
EcoRII	CCWGG	3 cut(s)	481, 553, 652
EcoT14I	CCWWGG	2 cut(s)	317, 717
ErhI	CCWWGG	2 cut(s)	317, 717
FaeI	CATG	4 cut(s)	163, 241, 298, 731
FatI	CATG	4 cut(s)	159, 237, 294, 727
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	6 cut(s)	275, 360, 372, 381, 384, 401
FokI	GGATG	2 cut(s)	570, 707
Fsp4HI	GCNGC	6 cut(s)	275, 360, 372, 381, 384, 401
FspBI	CTAG	2 cut(s)	29, 318
GluI	GCNGC	6 cut(s)	275, 360, 372, 381, 384, 401
HaeIII	GGCC	3 cut(s)	202, 277, 722
HapII	CCGG	4 cut(s)	77, 104, 346, 599
Hin1II	CATG	4 cut(s)	163, 241, 298, 731
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	3 cut(s)	100, 331, 464
HpaII	CCGG	4 cut(s)	77, 104, 346, 599
HphI	GGTGA	3 cut(s)	167, 179, 614
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	282, 586
Hpy188III	TCNNGA	1 cut(s)	752
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	3 cut(s)	56, 59, 92
HpyAV	CCTTC	2 cut(s)	213, 599
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	673
HpyCH4V	TGCA	6 cut(s)	237, 371, 448, 515, 520, 590
HpyF10VI	GCNNNNNNNGC	5 cut(s)	283, 320, 368, 377, 380
HpyF3I	CTNAG	2 cut(s)	192, 536
HpySE526I	ACGT	1 cut(s)	673
Hsp92II	CATG	4 cut(s)	163, 241, 298, 731
Kzo9I	GATC	4 cut(s)	168, 341, 550, 661
LmnI	GCTCC	1 cut(s)	610
Lsp1109I	GCAGC	4 cut(s)	346, 383, 387, 395
LweI	GCATC	4 cut(s)	358, 367, 577, 685
MaeI	CTAG	2 cut(s)	29, 318
MaeII	ACGT	1 cut(s)	673
MalI	GATC	4 cut(s)	170, 343, 552, 663
MboI	GATC	4 cut(s)	168, 341, 550, 661
MboII	GAAGA	8 cut(s)	80, 83, 401, 404, 438, 629, 641, 740
MfeI	CAATTG	2 cut(s)	300, 510
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	615
MlsI	TGGCCA	1 cut(s)	722
MluCI	AATT	3 cut(s)	300, 510, 705
MluNI	TGGCCA	1 cut(s)	722
MnlI	CCTC	6 cut(s)	164, 187, 217, 288, 400, 415
Mox20I	TGGCCA	1 cut(s)	722
MscI	TGGCCA	1 cut(s)	722
MseI	TTAA	3 cut(s)	542, 570, 704
Msp20I	TGGCCA	1 cut(s)	722
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	4 cut(s)	77, 104, 346, 599
MspR9I	CCNGG	5 cut(s)	346, 483, 555, 600, 654
MunI	CAATTG	2 cut(s)	300, 510
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	3 cut(s)	483, 555, 654
MwoI	GCNNNNNNNGC	5 cut(s)	283, 320, 368, 377, 380
NciI	CCSGG	2 cut(s)	346, 600
NdeII	GATC	4 cut(s)	168, 341, 550, 661
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	4 cut(s)	163, 241, 298, 731
NspI	RCATGY	1 cut(s)	241
PceI	AGGCCT	1 cut(s)	202
PctI	GAATGC	1 cut(s)	448
PfeI	GAWTC	3 cut(s)	100, 331, 464
PfoI	TCCNGGA	2 cut(s)	481, 553
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	6 cut(s)	276, 361, 373, 382, 385, 402
Psp6I	CCWGG	3 cut(s)	481, 553, 652
PspGI	CCWGG	3 cut(s)	481, 553, 652
PsuI	RGATCY	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	3 cut(s)	152, 293, 524
RsaNI	GTAC	3 cut(s)	151, 292, 523
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	542, 570, 704
SatI	GCNGC	6 cut(s)	275, 360, 372, 381, 384, 401
Sau3AI	GATC	4 cut(s)	168, 341, 550, 661
ScaI	AGTACT	1 cut(s)	524
ScrFI	CCNGG	5 cut(s)	346, 483, 555, 600, 654
SduI	GDGCHC	1 cut(s)	615
SfaNI	GCATC	4 cut(s)	358, 367, 577, 685
SfcI	CTRYAG	1 cut(s)	19
Sse9I	AATT	3 cut(s)	300, 510, 705
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	4 cut(s)	32, 274, 349, 380
SspMI	CTAG	2 cut(s)	29, 318
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	5 cut(s)	344, 481, 553, 598, 652
StyI	CCWWGG	2 cut(s)	317, 717
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	1 cut(s)	676
TaqI	TCGA	6 cut(s)	57, 87, 98, 108, 156, 751
TasI	AATT	3 cut(s)	300, 510, 705
TatI	WGTACW	2 cut(s)	291, 522
TauI	GCSGC	2 cut(s)	277, 383
TfiI	GAWTC	3 cut(s)	100, 331, 464
Tru1I	TTAA	3 cut(s)	542, 570, 704
Tru9I	TTAA	3 cut(s)	542, 570, 704
TscAI	CASTG	1 cut(s)	239
TseI	GCWGC	4 cut(s)	359, 371, 383, 400
TspDTI	ATGAA	5 cut(s)	176, 344, 521, 725, 744
TspRI	CASTG	1 cut(s)	239
XceI	RCATGY	1 cut(s)	241
XmaJI	CCTAGG	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	2 cut(s)	29, 318
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.