Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Forward (+)

62073054 .. 62081205

Gene Structure 8152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG441000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2715 bp

ATGGGAGTTCCAGCTTTCTACAGATGGCTAGCGGAGAAGTATCCACTCGTCGTCGTCGATGTGGTGGAAGAAGAACCGGTTGTAATCGACGAAGTTTCGATTCCGGTCGACACCAGTAAGCCAAACCCTAACGGCGAGTATGACAATCTGTACCTCGACATGAATGGGATTATTCACCCCTGTTTTCACCCTGAGGATCGGCCTTCGCCAACTACCTTTGATGAGGTATTTCAGTGCATGTTTGACTACATAGATAGGCTTTTTGTGATGGTGCGGCCTCGGAAGCTACTGTACATGGCAATTGATGGTGTTGCCCCTAGGGCGAAAATGAATCAACAGAGATCCCGGCGGTTTAGAGCTGCTAAAGATGCAGCAGATGCGGCAGCTGAAGAAGAAAGGCTGCGTGAGGAGTTTGAAATGGAGGGAAGAAAGCTTCCACCTAAACTGCATTCGCAAACTTTTGATTCCAATGTCATTACTCCTGGAACTCCATTTATGGCTGTTTTATCAATTGCATTGCAGTACTATATTCATCTTAGATTAAATAACGATCCTGGATGGAAAAATGTTAAGGTCATTCTTTCCGATGCAAATGTTCCGGGTGAAGGGGAGCACAAGGTTATGTCATACATTCGTCTTCAAAGAAATCTTCCTGGTTATGATCCAAATACACGTCATTGCCTGTATGGTTTGGATGCCGATTTAATTATGCTTGCCTTGGCCACCCATGAAGTTCATTTCTCCATTCTTCGAGAGGTTGTTTTCGTCGCTGGACAGCAGGACAAGTGCTTCCTGTGTGGTCAGGTGGGTCATTTAGCTGCCAGTTGTGAAGGAAAGGCAAAACGGAAGGCTGGAGAGCTTGATGAGAAAGGTGATGCCGAGGCTGTGGCCAAGAAGCCGTACCAGTTTCTCAATATTTGGACCCTTAGAGAATATTTGGAATATGAGATGCGGATTCCAGGTGCCCCATTTGAGATTGATATTGAGCGCATTGTGGATGACTTTATATTCCTTTGTTTCTTTGTCGGAAATGATTTCTTACCTCATATGCCTACACTGGAGATTCGGGAGGGTGCAATCAACTTGCTTTTGGCTGTATATAAAAAGGAATTTAGGGGAATGGGGGGATATCTGACTAATGCAAGCAAGCCAAATTTGAGGCGGGTGGAGCATTTCATTCAGGCAGTTGGAAGTTATGAAGATAAAATATTCCAGAAAAGAGCTCAACTGCATCTGAAGCAAGCAGAAAGAATAAAGCGTCAAAAGGCACAAGCTCGAAGAGGAGATGACGCAGAGCCCCAAGTGCAACCAGATTCTTTAGTTGCAGTTAATCGGTTTCATGGTTCTCGTCTTGCTTCAGGTCCTTCACCTGTGCCGTTTCAACAATCTGGATCTGGTAGAGGAAATCCTCAAAAGGTTGCACGCTTGTCTTTAGAGGCATCAACTGTCGGTGCTGCTATTGTTGAAGCTGAGAACATTCTTGAAGATGTTCATGAAAACAAAGAAGATTTGAAAATAAAGCTCAAGGAGGTTCTTCGTGAGAAATCTGATGCTTTTAACTCTAAAAATCCTGAAGAAGACAAGGGTATTGCAAAACTCCCTTTCATTGATGAAGTCCGTCTTCTTTCTGAGGTTGAAAAACTTGAACATACATTAACGGAGGAGGAATCACGCAGAAACAGTGTGATGTTTGAGATGCTCTTTGTTACATCTTCTCATCCTCTCTCTGTGTGCATATATTCTCTTGACAATCGCTGTAAACAATTGACAGACAAAGAGCGTGTTGAGATTAAGGAACAAATTGATCCCAAATACAGGGATACATGCAGTGAAGGGATGAACGGCTATCTATCTCCATGTGCTGGAGAGCCTTGTCCTCCCGTTTTCCGATCTCCTGTTGAAAGCATGGAGGATATAATGGACAACCAAGTCATATGTGCAATATACAGACTACCAGATGTACACGAACATATAACTCGACCACCAGCAGGGGTCATTTTCCCTAAGAAGATTGTGTCATCGGGGGATATGAAGCCTGCACCTGTTTTGTGGCATGAGGATTCAGGGAGGAAGCCATGGCATGACAATTCAGGGAGGAGGCCATATGAAAGTTCTAGACAGCACCCTCCTGGAGCCATTTCTGGAAGACAGCTTGGCGATGCCGCTCATCGACTTGTTGTCAATAGTTTACATGTTAAGGCAAACAGCAATGGGTATGGCAATCAGATGCCTGCCCATCAACCATATGCCGAACCTCCATATTACCCACCACGGGCTTCCTACGCAAGTAATGGAAGCTATGATCAGGGACACCACAGTATGGCACCACCTAGAACATTCCAGCATCCTCAAGTGCAACACCAAAATTCCTACCACCCTCCGAATAGACCTCATTCTCAACATTATGAAAGAAATTCTGGTCACTCATACTATCAGTCGGCCCGTCATCAGAATGGTGGAATTGCTTACCCCCAGAGACCAATTACACCAGCTCCACCAGGGGTCAATCCAGGTCCTTATCCAGTTGGTTATAACAACTATCAGAGTTACCAACAAGCAGGGCCGCCTGGTTATCAAGGCATTGATGCCTGGGTTCCACCGCCCCAAAATATGGGCAGAGGATATGGTCGTCCTCAGCAATCTGGAAACCCGTACTCTGGATTGGACAGGAGAGGAAATAGGAGACCACCTCCATCCCAGCATGGCCGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

904

Amino Acids

102.22

Weight (kDa)

6.83

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 252	5.8e-102	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	326 - 436	1.8e-40	Xrn1 helical domain
XRN_M	PF17846	528 - 677	1.4e-28	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2532
AasI	GACNNNNNNGTC	1 cut(s)	1928
AccB1I	GGYRCC	2 cut(s)	962, 2323
AccB7I	CCANNNNNTGG	3 cut(s)	1862, 2320, 2611
AccBSI	CCGCTC	1 cut(s)	2165
AccI	GTMKAC	1 cut(s)	108
AclWI	GGATC	6 cut(s)	204, 336, 545, 656, 1399, 1799
AcoI	YGGCCR	3 cut(s)	720, 888, 2704
AcsI	RAATTY	4 cut(s)	1109, 1153, 2365, 2413
AcuI	CTGAAG	4 cut(s)	408, 1256, 1341, 1593
AfaI	GTAC	6 cut(s)	152, 293, 524, 902, 1962, 2654
AfiI	CCNNNNNNNGG	8 cut(s)	605, 1815, 1862, 1988, 2272, 2320, 2611, 2657
AflIII	ACRYGT	2 cut(s)	671, 2191
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	9 cut(s)	416, 641, 1382, 1466, 1484, 1513, 1637, 1646, 1901
AhdI	GACNNNNNGTC	1 cut(s)	2177
AjiI	CACGTC	1 cut(s)	674
AjnI	CCWGG	9 cut(s)	481, 553, 652, 958, 2128, 2497, 2509, 2566, 2588
Alw21I	GWGCWC	2 cut(s)	615, 1225
Alw26I	GTCTC	2 cut(s)	2470, 2677
AlwI	GGATC	6 cut(s)	204, 336, 545, 656, 1399, 1799
AoxI	GGCC	8 cut(s)	200, 275, 720, 888, 2099, 2439, 2561, 2704
ApeKI	GCWGC	6 cut(s)	359, 371, 383, 400, 818, 1454
ApoI	RAATTY	4 cut(s)	1109, 1153, 2365, 2413
AsiGI	ACCGGT	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	1488
AspA2I	CCTAGG	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	990
AspS9I	GGNCC	5 cut(s)	921, 1361, 2440, 2513, 2561
AsuC2I	CCSGG	2 cut(s)	346, 600
AsuHPI	GGTGA	5 cut(s)	167, 179, 614, 884, 1359
AsuNHI	GCTAGC	1 cut(s)	28
AvaII	GGWCC	3 cut(s)	921, 1361, 2513
AvrII	CCTAGG	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	967
BalI	TGGCCA	2 cut(s)	722, 890
BanI	GGYRCC	2 cut(s)	962, 2323
BanII	GRGCYC	2 cut(s)	1225, 1299
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BbsI	GAAGAC	4 cut(s)	629, 1584, 1613, 2152
Bbv12I	GWGCWC	2 cut(s)	615, 1225
BbvCI	CCTCAGC	1 cut(s)	2634
BbvI	GCAGC	6 cut(s)	346, 383, 387, 395, 805, 1441
BccI	CCATC	6 cut(s)	18, 262, 299, 552, 2244, 2701
BceAI	ACGGC	4 cut(s)	148, 883, 1360, 1858
BciT130I	CCWGG	9 cut(s)	483, 555, 654, 960, 2130, 2499, 2511, 2568, 2590
BciVI	GTATCC	2 cut(s)	51, 1813
BclI	TGATCA	1 cut(s)	2302
BcnI	CCSGG	2 cut(s)	346, 600
BcoDI	GTCTC	2 cut(s)	2470, 2677
BfaI	CTAG	4 cut(s)	29, 318, 2115, 2331
BfmI	CTRYAG	1 cut(s)	19
BfuI	GTATCC	2 cut(s)	51, 1813
BglI	GCCNNNNNGGC	1 cut(s)	320
BlnI	CCTAGG	1 cut(s)	317
BmcAI	AGTACT	1 cut(s)	524
Bme18I	GGWCC	3 cut(s)	921, 1361, 2513
BmeRI	GACNNNNNGTC	1 cut(s)	2177
BmgBI	CACGTC	1 cut(s)	674
BmgT120I	GGNCC	5 cut(s)	921, 1361, 2440, 2513, 2561
BmiI	GGNNCC	5 cut(s)	923, 964, 2134, 2325, 2595
BmtI	GCTAGC	1 cut(s)	32
BpiI	GAAGAC	4 cut(s)	629, 1584, 1613, 2152
BplI	GAGNNNNNCTC	2 cut(s)	2674, 2706
BpmI	CTGGAG	4 cut(s)	873, 1079, 1884, 2151
Bpu10I	CCTNAGC	1 cut(s)	2634
BpuEI	CTTGAG	2 cut(s)	1508, 2334
BpuMI	CCSGG	2 cut(s)	346, 600
BsaI	GGTCTC	2 cut(s)	2470, 2677
BsaJI	CCNNGG	8 cut(s)	278, 317, 717, 879, 2075, 2270, 2498, 2589
BsaWI	WCCGGW	2 cut(s)	76, 103
BsaXI	ACNNNNNCTCC	2 cut(s)	2476, 2506
Bsc4I	CCNNNNNNNGG	8 cut(s)	605, 1815, 1862, 1988, 2272, 2320, 2611, 2657
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	5 cut(s)	114, 822, 904, 1062, 2522
Bse21I	CCTNAGG	1 cut(s)	192
Bse3DI	GCAATG	3 cut(s)	515, 676, 2215
BseBI	CCWGG	9 cut(s)	483, 555, 654, 960, 2130, 2499, 2511, 2568, 2590
BseDI	CCNNGG	8 cut(s)	278, 317, 717, 879, 2075, 2270, 2498, 2589
BseGI	GGATG	7 cut(s)	563, 700, 1003, 1717, 1842, 2344, 2693
BseLI	CCNNNNNNNGG	8 cut(s)	605, 1815, 1862, 1988, 2272, 2320, 2611, 2657
BseMI	GCAATG	3 cut(s)	515, 676, 2215
BseMII	CTCAG	4 cut(s)	183, 1461, 1620, 2648
BseNI	ACTGG	5 cut(s)	114, 822, 904, 1062, 2522
BseRI	GAGGAG	4 cut(s)	422, 1296, 1676, 2110
BseSI	GKGCMC	1 cut(s)	967
BseXI	GCAGC	6 cut(s)	346, 383, 387, 395, 805, 1441
BseYI	CCCAGC	1 cut(s)	2697
BsgI	GTGCAG	1 cut(s)	2022
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	8 cut(s)	202, 277, 722, 890, 2101, 2441, 2563, 2706
BshNI	GGYRCC	2 cut(s)	962, 2323
BshTI	ACCGGT	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	615, 1225
BsiSI	CCGG	4 cut(s)	77, 104, 346, 599
BslFI	GGGAC	1 cut(s)	2322
BslI	CCNNNNNNNGG	8 cut(s)	605, 1815, 1862, 1988, 2272, 2320, 2611, 2657
BsmAI	GTCTC	2 cut(s)	2470, 2677
BsmFI	GGGAC	1 cut(s)	2322
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	8 cut(s)	202, 277, 722, 890, 2101, 2441, 2563, 2706
Bso31I	GGTCTC	2 cut(s)	2470, 2677
Bsp1286I	GDGCHC	4 cut(s)	615, 967, 1225, 1299
Bsp1407I	TGTACA	2 cut(s)	291, 1960
Bsp143I	GATC	8 cut(s)	196, 341, 550, 661, 1391, 1804, 1889, 2302
Bsp19I	CCATGG	1 cut(s)	2075
BspANI	GGCC	8 cut(s)	202, 277, 722, 890, 2101, 2441, 2563, 2706
BspCNI	CTCAG	4 cut(s)	184, 1462, 1621, 2647
BspHI	TCATGA	1 cut(s)	1492
BspLI	GGNNCC	5 cut(s)	923, 964, 2134, 2325, 2595
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	6 cut(s)	204, 336, 545, 656, 1399, 1799
BspT107I	GGYRCC	2 cut(s)	962, 2323
BspTNI	GGTCTC	2 cut(s)	2470, 2677
BsrBI	CCGCTC	1 cut(s)	2165
BsrDI	GCAATG	3 cut(s)	515, 676, 2215
BsrFI	RCCGGY	1 cut(s)	76
BsrGI	TGTACA	2 cut(s)	291, 1960
BsrI	ACTGG	5 cut(s)	114, 822, 904, 1062, 2522
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	8 cut(s)	278, 317, 717, 879, 2075, 2270, 2498, 2589
BssMI	GATC	8 cut(s)	196, 341, 550, 661, 1391, 1804, 1889, 2302
BssT1I	CCWWGG	3 cut(s)	317, 717, 2075
Bst2UI	CCWGG	9 cut(s)	483, 555, 654, 960, 2130, 2499, 2511, 2568, 2590
Bst4CI	ACNGT	4 cut(s)	291, 1447, 1682, 2318
Bst6I	CTCTTC	1 cut(s)	1273
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstAUI	TGTACA	2 cut(s)	291, 1960
BstC8I	GCNNGC	8 cut(s)	30, 714, 1144, 1148, 1242, 1423, 2037, 2232
BstDEI	CTNAG	7 cut(s)	192, 536, 926, 1470, 1629, 2004, 2634
BstDSI	CCRYGG	2 cut(s)	2075, 2270
BstF5I	GGATG	7 cut(s)	563, 700, 1003, 1717, 1842, 2344, 2693
BstHHI	GCGC	1 cut(s)	990
BstKTI	GATC	8 cut(s)	199, 344, 553, 664, 1394, 1807, 1892, 2305
BstMAI	GTCTC	2 cut(s)	2470, 2677
BstMBI	GATC	8 cut(s)	196, 341, 550, 661, 1391, 1804, 1889, 2302
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	9 cut(s)	283, 320, 368, 377, 380, 1168, 1237, 1303, 2282
BstNI	CCWGG	9 cut(s)	483, 555, 654, 960, 2130, 2499, 2511, 2568, 2590
BstNSI	RCATGY	3 cut(s)	241, 1827, 2195
BstSFI	CTRYAG	1 cut(s)	19
BstSLI	GKGCMC	1 cut(s)	967
BstV1I	GCAGC	6 cut(s)	346, 383, 387, 395, 805, 1441
BstV2I	GAAGAC	4 cut(s)	629, 1584, 1613, 2152
BstX2I	RGATCY	2 cut(s)	341, 1391
BstYI	RGATCY	2 cut(s)	341, 1391
Bsu36I	CCTNAGG	1 cut(s)	192
BsuI	GTATCC	2 cut(s)	51, 1813
BsuRI	GGCC	8 cut(s)	202, 277, 722, 890, 2101, 2441, 2563, 2706
BtgI	CCRYGG	2 cut(s)	2075, 2270
BtgZI	GCGATG	1 cut(s)	2172
BtrI	CACGTC	1 cut(s)	674
BtsCI	GGATG	7 cut(s)	563, 700, 1003, 1717, 1842, 2344, 2693
BtsI	GCAGTG	1 cut(s)	1834
BtsIMutI	CAGTG	4 cut(s)	239, 1055, 1687, 1834
Cac8I	GCNNGC	8 cut(s)	30, 714, 1144, 1148, 1242, 1423, 2037, 2232
CciI	TCATGA	1 cut(s)	1492
CfoI	GCGC	1 cut(s)	990
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	5 cut(s)	921, 1361, 2440, 2513, 2561
CseI	GACGC	2 cut(s)	1247, 1298
Csp6I	GTAC	6 cut(s)	151, 292, 523, 901, 1961, 2653
CspAI	ACCGGT	1 cut(s)	76
CviQI	GTAC	6 cut(s)	151, 292, 523, 901, 1961, 2653
DdeI	CTNAG	7 cut(s)	192, 536, 926, 1470, 1629, 2004, 2634
DpnI	GATC	8 cut(s)	198, 343, 552, 663, 1393, 1806, 1891, 2304
DpnII	GATC	8 cut(s)	196, 341, 550, 661, 1391, 1804, 1889, 2302
DrdI	GACNNNNNNGTC	1 cut(s)	1928
DriI	GACNNNNNGTC	1 cut(s)	2177
DseDI	GACNNNNNNGTC	1 cut(s)	1928
EaeI	YGGCCR	3 cut(s)	720, 888, 2704
Eam1104I	CTCTTC	1 cut(s)	1273
Eam1105I	GACNNNNNGTC	1 cut(s)	2177
EarI	CTCTTC	1 cut(s)	1273
Ecl136II	GAGCTC	1 cut(s)	1223
Eco130I	CCWWGG	3 cut(s)	317, 717, 2075
Eco24I	GRGCYC	2 cut(s)	1225, 1299
Eco31I	GGTCTC	2 cut(s)	2470, 2677
Eco32I	GATATC	1 cut(s)	1130
Eco47I	GGWCC	3 cut(s)	921, 1361, 2513
Eco53kI	GAGCTC	1 cut(s)	1223
Eco57I	CTGAAG	4 cut(s)	408, 1256, 1341, 1593
Eco81I	CCTNAGG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	1223
EcoO109I	RGGNCCY	2 cut(s)	1361, 2513
EcoRII	CCWGG	9 cut(s)	481, 553, 652, 958, 2128, 2497, 2509, 2566, 2588
EcoRV	GATATC	1 cut(s)	1130
EcoT14I	CCWWGG	3 cut(s)	317, 717, 2075
EcoT38I	GRGCYC	2 cut(s)	1225, 1299
ErhI	CCWWGG	3 cut(s)	317, 717, 2075
FalI	AAGNNNNNCTT	2 cut(s)	1605, 1637
FaqI	GGGAC	1 cut(s)	2322
FauI	CCCGC	1 cut(s)	1155
FauNDI	CATATG	4 cut(s)	1047, 1934, 2104, 2245
FbaI	TGATCA	1 cut(s)	2302
FblI	GTMKAC	1 cut(s)	108
FokI	GGATG	7 cut(s)	570, 707, 1010, 1704, 1849, 2331, 2680
FriOI	GRGCYC	2 cut(s)	1225, 1299
FspBI	CTAG	4 cut(s)	29, 318, 2115, 2331
GlaI	GCGC	1 cut(s)	989
GsaI	CCCAGC	1 cut(s)	2701
GsuI	CTGGAG	4 cut(s)	873, 1079, 1884, 2151
HaeIII	GGCC	8 cut(s)	202, 277, 722, 890, 2101, 2441, 2563, 2706
HapII	CCGG	4 cut(s)	77, 104, 346, 599
HgaI	GACGC	2 cut(s)	1247, 1298
HhaI	GCGC	1 cut(s)	990
Hin6I	GCGC	1 cut(s)	988
HinP1I	GCGC	1 cut(s)	988
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	8 cut(s)	100, 331, 464, 955, 1063, 1313, 1667, 2060
HpaII	CCGG	4 cut(s)	77, 104, 346, 599
HphI	GGTGA	5 cut(s)	167, 179, 614, 884, 1359
Hpy166II	GTNNAC	4 cut(s)	109, 1760, 1963, 2189
Hpy8I	GTNNAC	4 cut(s)	109, 1760, 1963, 2189
Hpy99I	CGWCG	5 cut(s)	53, 56, 59, 92, 770
HpyAV	CCTTC	6 cut(s)	213, 599, 824, 841, 1374, 1826
HpyCH4III	ACNGT	4 cut(s)	291, 1447, 1682, 2318
HpyCH4IV	ACGT	1 cut(s)	673
HpyF10VI	GCNNNNNNNGC	9 cut(s)	283, 320, 368, 377, 380, 1168, 1237, 1303, 2282
HpyF3I	CTNAG	7 cut(s)	192, 536, 926, 1470, 1629, 2004, 2634
HpySE526I	ACGT	1 cut(s)	673
HspAI	GCGC	1 cut(s)	988
Ksp22I	TGATCA	1 cut(s)	2302
Kzo9I	GATC	8 cut(s)	196, 341, 550, 661, 1391, 1804, 1889, 2302
LmnI	GCTCC	4 cut(s)	610, 1168, 2132, 2497
Lsp1109I	GCAGC	6 cut(s)	346, 383, 387, 395, 805, 1441
MaeI	CTAG	4 cut(s)	29, 318, 2115, 2331
MaeII	ACGT	1 cut(s)	673
MaeIII	GTNAC	3 cut(s)	1705, 2420, 2546
MalI	GATC	8 cut(s)	198, 343, 552, 663, 1393, 1806, 1891, 2304
MbiI	CCGCTC	1 cut(s)	2165
MboI	GATC	8 cut(s)	196, 341, 550, 661, 1391, 1804, 1889, 2302
MfeI	CAATTG	3 cut(s)	300, 510, 1763
MflI	RGATCY	2 cut(s)	341, 1391
MhlI	GDGCHC	4 cut(s)	615, 967, 1225, 1299
MlsI	TGGCCA	2 cut(s)	722, 890
MluNI	TGGCCA	2 cut(s)	722, 890
MmeI	TCCRAC	2 cut(s)	1006, 1168
Mox20I	TGGCCA	2 cut(s)	722, 890
MroXI	GAANNNNTTC	1 cut(s)	1488
MscI	TGGCCA	2 cut(s)	722, 890
MseI	TTAA	8 cut(s)	542, 570, 704, 1329, 1557, 1655, 1791, 2196
MslI	CAYNNNNRTG	1 cut(s)	2451
Msp20I	TGGCCA	2 cut(s)	722, 890
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	4 cut(s)	77, 104, 346, 599
MunI	CAATTG	3 cut(s)	300, 510, 1763
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	9 cut(s)	483, 555, 654, 960, 2130, 2499, 2511, 2568, 2590
MwoI	GCNNNNNNNGC	9 cut(s)	283, 320, 368, 377, 380, 1168, 1237, 1303, 2282
NciI	CCSGG	2 cut(s)	346, 600
NcoI	CCATGG	1 cut(s)	2075
NdeI	CATATG	4 cut(s)	1047, 1934, 2104, 2245
NdeII	GATC	8 cut(s)	196, 341, 550, 661, 1391, 1804, 1889, 2302
NheI	GCTAGC	1 cut(s)	28
NlaIV	GGNNCC	5 cut(s)	923, 964, 2134, 2325, 2595
NmeAIII	GCCGAG	1 cut(s)	904
NmuCI	GTSAC	1 cut(s)	2420
NspI	RCATGY	3 cut(s)	241, 1827, 2195
PagI	TCATGA	1 cut(s)	1492
PciI	ACATGT	1 cut(s)	2191
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	1 cut(s)	448
PdmI	GAANNNNTTC	1 cut(s)	1488
PfeI	GAWTC	8 cut(s)	100, 331, 464, 955, 1063, 1313, 1667, 2060
PflMI	CCANNNNNTGG	3 cut(s)	1862, 2320, 2611
PfoI	TCCNGGA	3 cut(s)	481, 553, 2128
PinAI	ACCGGT	1 cut(s)	76
PpuMI	RGGWCCY	2 cut(s)	1361, 2513
PscI	ACATGT	1 cut(s)	2191
PsiI	TTATAA	1 cut(s)	2532
Psp124BI	GAGCTC	1 cut(s)	1225
Psp5II	RGGWCCY	2 cut(s)	1361, 2513
Psp6I	CCWGG	9 cut(s)	481, 553, 652, 958, 2128, 2497, 2509, 2566, 2588
PspFI	CCCAGC	1 cut(s)	2697
PspGI	CCWGG	9 cut(s)	481, 553, 652, 958, 2128, 2497, 2509, 2566, 2588
PspN4I	GGNNCC	5 cut(s)	923, 964, 2134, 2325, 2595
PspPI	GGNCC	5 cut(s)	921, 1361, 2440, 2513, 2561
PspPPI	RGGWCCY	2 cut(s)	1361, 2513
PsuI	RGATCY	2 cut(s)	341, 1391
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	6 cut(s)	152, 293, 524, 902, 1962, 2654
RsaNI	GTAC	6 cut(s)	151, 292, 523, 901, 1961, 2653
RseI	CAYNNNNRTG	1 cut(s)	2451
SacI	GAGCTC	1 cut(s)	1225
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	8 cut(s)	542, 570, 704, 1329, 1557, 1655, 1791, 2196
Sau3AI	GATC	8 cut(s)	196, 341, 550, 661, 1391, 1804, 1889, 2302
Sau96I	GGNCC	5 cut(s)	921, 1361, 2440, 2513, 2561
ScaI	AGTACT	1 cut(s)	524
SduI	GDGCHC	4 cut(s)	615, 967, 1225, 1299
SfcI	CTRYAG	1 cut(s)	19
SinI	GGWCC	3 cut(s)	921, 1361, 2513
SmiMI	CAYNNNNRTG	1 cut(s)	2451
SmlI	CTYRAG	2 cut(s)	1523, 2349
SmoI	CTYRAG	2 cut(s)	1523, 2349
SspI	AATATT	3 cut(s)	916, 935, 1209
SspMI	CTAG	4 cut(s)	29, 318, 2115, 2331
SstI	GAGCTC	1 cut(s)	1225
StyI	CCWWGG	3 cut(s)	317, 717, 2075
TaaI	ACNGT	4 cut(s)	291, 1447, 1682, 2318
TaiI	ACGT	1 cut(s)	676
TaqI	TCGA	9 cut(s)	57, 87, 98, 108, 156, 751, 1276, 1978, 2170
TatI	WGTACW	3 cut(s)	291, 522, 1960
TauI	GCSGC	5 cut(s)	277, 383, 2165, 2566, 2709
TfiI	GAWTC	8 cut(s)	100, 331, 464, 955, 1063, 1313, 1667, 2060
Tru1I	TTAA	8 cut(s)	542, 570, 704, 1329, 1557, 1655, 1791, 2196
Tru9I	TTAA	8 cut(s)	542, 570, 704, 1329, 1557, 1655, 1791, 2196
TscAI	CASTG	4 cut(s)	239, 1062, 1687, 1834
TseFI	GTSAC	1 cut(s)	2420
TseI	GCWGC	6 cut(s)	359, 371, 383, 400, 818, 1454
Tsp45I	GTSAC	1 cut(s)	2420
TspGWI	ACGGA	3 cut(s)	859, 1607, 1673
TspRI	CASTG	4 cut(s)	239, 1062, 1687, 1834
Van91I	CCANNNNNTGG	3 cut(s)	1862, 2320, 2611
VpaK11BI	GGWCC	3 cut(s)	921, 1361, 2513
XapI	RAATTY	4 cut(s)	1109, 1153, 2365, 2413
XbaI	TCTAGA	1 cut(s)	2114
XceI	RCATGY	3 cut(s)	241, 1827, 2195
XmaJI	CCTAGG	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	1488
XspI	CTAG	4 cut(s)	29, 318, 2115, 2331
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.