Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Reverse (-)

87782172 .. 87785145

Gene Structure 2974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2685 bp

ATGGGGGTTCCGGCTTTCTATAGATGGGTAGCGGAGAAGTATCCGCTTGTGGTTGTAGATGTGGTGGAGGAGGAACCGATTGTGATTGATGATGTTTCGATTCCGGTTGACACCACGAAACCGAACCCGAATGGTCTTGAGTTTGATAATCTTTACTTGGACATGAATGGGATTATTCATCCTTGTTTCCACCCCGAGGATAGGCCGAGTCCGACTACTTTTGATGAGGTGTTTCAGTGCATGTTTGAGTATATCGATAGGCTTTTTGGGATGGTGCGGCCGAGAAAGGTACTGTACATGGCCATTGATGGTGTTGCCCCTAGGGCGAAGATGAATCAGCAGAGGTCGAGGCGGTTTAGGGCTGCAAAAGATGCGGCAGACGCGGCGGCTGAAGAAGAGAAACTTCGTGAGGAGTTTGAAGCGGAGGGAGGAAGCTTCCGCCAAAATTGCATTGCATTGCAGTACTATATTCATCTTAGGTTAAATAATGATCCTGGATGGAAAAATGTTAAGGTTATCCTTTCTGATGCAAATGCTCCGGGTGAAGGGGAACACAAGATTATGTCATATATTCGTCTTCAAAGAAACCTTCCTGGTTATGATCCGAATACGCGTCATTGCCTGTATGGTTTGGATGCTGATTTAATTATGCTGGCTTTGGCTACACATGAAGTTCATTTTTCAATCCTGCGAGAGGTTGTTTTCACTGGACAGCAAGACAAGTGCTTCCTTTGTGGTCAGATGGGTCATTTAGCGGCAGATTGTGAAGGAAGGGCAAAACGAAAGGATGGAGATCACCTTGATGATGATCAGAAAGGTACCGGTGCTGAGGTGGTGGCCAAGAAGCCGTACCAGTTTCTCAACATTTGGACTCTTAGAGAATATTTAGACTATGAGATGCGGAATATTCCCAATTCCCCATTTGAGATTGATCTTGAGCGCATTGTGGATGATTTCATATTCATTTGTTTTTTCGTTGGAAACGATTTCCTGCCACATATGCCTACTCTGGAGATTCGTGAGGGTGCAATCAACTTGCTTATGGCTGTATACAAAAAGGAATTTCATGCACTGGGTGGATATTTGACTGATTCAAGCAAGCTGAATTTGAGTCGGGTGGAGCATTTCATTCAGGCAGTTGGTTGTTATGAAGACAAAATATTCCAGAAACGAGCTCAATTGCATCAGCGGCAGGCACAAAGAATAAAGCGTGCCAAGGTGCAAGTTCCCCAAGTTCAGCCAGATTCTTTAGTTGCAGTTAATCGATTTCAAGGTTCTCGTCTTGCTTCAGGTCCTTCTCCTGCACCCTATCAACAGTATTGTAGATCATCTGGTAGAGGAAATCCTGAAAAAGTTGCACGCTTTTCTTCGGAGGCATCAAGTATTGGTGCTGCTATTGTTGAAGCTGAGAACAGCAGTACTCTAGATGTTGAAGTACATGAAAATAAAGAAGATTTAAAAGCAAAGCTCAAAGAGATTCTTCGTGAGAAATCCGATGCTTTTAACTCTAGAAATCCCCAAGAAGAAGACAAGGTTAAATTGGGAGAACCTGGATGGAGGGATAGGTATTATGAAGAAAAGTTTTCTGCAAAAACTCAAGAAGAACGTGAAGCAGTTCGTAAAGATGTTATCTTGCGATACACGGAAGGCTTGTGTTGGGTGATGAACTATTATTATGAAGGGGTTTGTTCATGGGAATGGTTTTACCCCTATCATTATGCACCCTTTGCTTCTGATCTCAAGGACCTAGGTCAGCTAAAGATAAGCTTCAATTTGGGCACTCCCTTTAAACCCTTCAATCAGCTGTTGGGGGTTTTCCCAGCTGCAAGCGCCCATGCCCTTCCTGAACAATACAGAAAGTTAATGACTGATCCAAACTCTCCTATTATTGACTTTTACCCTACTAACTTTGAAGTGGATATGAATGGGAAACGTTATGCATGGCAGGGTATTGCAAAATTGCCCTTCATTGACCAAGGTCGTCTTCTTTCTGAGGTTGAGAAAATTGAACACACATTGGCAGAGGAGGAAACCCGGAGAAACTCCATGATGTTTGAGATGCTCTTTGTTTCATCTTCTCATCCTCTCTCTGTATGCATATACTTTCTTGACGATTGTTGTAGACAGTTGACAGACAAAGATCGAGTTGAGGTTAAGGAACAAATTGATCCCAAATACAGTGAAGGGATGAACGGTTATCTATCTTCATGTGCTGGAGAGTCTTGTCCTCCTGTTTTTCGGTCTCCTGTTAAATGCATGGAGGATATCATGGACAACCAAGTCATCTGCGCAATATATAGGCTACCAGAAGTACATAAGCACATAACTCGACCGCCTGCAGGTGTTATTTTCCCCAAGACTGTGATGGGACTACTTGGAATGCCACTACCTAGAACATTTCAGCATCCTCAAGGTCAGCACAACCGAAATTCAAGTTTCACTAGTGATCGGCATTCATCATCAGCTGTTTATAACGCTCAGAATAGGTCTCCTTCTCAACATCATGCCAGGGGTTCTGGGCACGCTTACTATCAATCAGGAAGGCATCAGAATGGTGGGCTCATTTACCCTCAGATACCTATTACACAAGCTCCTTCAGGTTTGAGACCTGGTCCTTCTCAAGGTGTTTATAACAAGTATCAGAGTTACCAGCCATCTGGAGCACCTCGTTATCAAAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

894

Amino Acids

102.21

Weight (kDa)

6.23

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 232	3.1e-86	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	310 - 789	1.2e-165	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2472, 2631
AarI	CACCTGC	1 cut(s)	2330
AasI	GACNNNNNNGTC	1 cut(s)	2279
Acc16I	TGCGCA	1 cut(s)	2290
Acc36I	ACCTGC	1 cut(s)	2330
Acc65I	GGTACC	1 cut(s)	818
AccB1I	GGYRCC	1 cut(s)	818
AccI	GTMKAC	2 cut(s)	1050, 2122
AccII	CGCG	2 cut(s)	383, 613
AclI	AACGTT	1 cut(s)	1933
AclWI	GGATC	4 cut(s)	485, 596, 1865, 2162
AcoI	YGGCCR	3 cut(s)	278, 300, 837
AcsI	RAATTY	3 cut(s)	1061, 1105, 2428
AcuI	CTGAAG	3 cut(s)	411, 1272, 2580
AdeI	CACNNNGTG	1 cut(s)	1076
AfaI	GTAC	8 cut(s)	291, 296, 464, 820, 851, 1420, 1437, 2313
AfiI	CCNNNNNNNGG	6 cut(s)	196, 201, 545, 694, 2339, 2621
AflIII	ACRYGT	1 cut(s)	611
AgeI	ACCGGT	1 cut(s)	821
AhlI	ACTAGT	1 cut(s)	2441
AjnI	CCWGG	5 cut(s)	493, 592, 1549, 2507, 2608
AjuI	GAANNNNNNNTTGG	2 cut(s)	1968, 2000
Alw21I	GWGCWC	2 cut(s)	1177, 2665
Alw26I	GTCTC	3 cut(s)	2247, 2493, 2599
AlwI	GGATC	4 cut(s)	485, 596, 1865, 2162
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	4 cut(s)	203, 278, 300, 837
ApeKI	GCWGC	3 cut(s)	362, 1391, 1823
ApoI	RAATTY	3 cut(s)	1061, 1105, 2428
AsiGI	ACCGGT	1 cut(s)	821
Asp700I	GAANNNNTTC	1 cut(s)	1614
Asp718I	GGTACC	1 cut(s)	818
AspA2I	CCTAGG	2 cut(s)	320, 1747
AspLEI	GCGC	3 cut(s)	942, 1832, 2291
AspS9I	GGNCC	3 cut(s)	1292, 1744, 2612
AsuC2I	CCSGG	2 cut(s)	540, 2035
AsuHPI	GGTGA	3 cut(s)	554, 788, 1672
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	3 cut(s)	1292, 1744, 2612
AvrII	CCTAGG	2 cut(s)	320, 1747
BaeGI	GKGCMC	2 cut(s)	1781, 2523
BalI	TGGCCA	2 cut(s)	302, 839
BanI	GGYRCC	1 cut(s)	818
BanII	GRGCYC	2 cut(s)	1177, 2562
BbsI	GAAGAC	4 cut(s)	569, 1158, 1533, 1976
Bbv12I	GWGCWC	2 cut(s)	1177, 2665
BbvCI	CCTCAGC	1 cut(s)	828
BbvI	GCAGC	3 cut(s)	349, 1378, 1810
BccI	CCATC	9 cut(s)	18, 265, 302, 492, 736, 782, 1548, 2359, 2662
BceAI	ACGGC	1 cut(s)	832
BcgI	CGANNNNNNTGC	2 cut(s)	2309, 2343
BciT130I	CCWGG	5 cut(s)	495, 594, 1551, 2509, 2610
BciVI	GTATCC	1 cut(s)	51
BclI	TGATCA	1 cut(s)	808
BcnI	CCSGG	2 cut(s)	540, 2035
BcoDI	GTCTC	3 cut(s)	2247, 2493, 2599
BcuI	ACTAGT	1 cut(s)	2441
BfaI	CTAG	6 cut(s)	321, 1424, 1509, 1748, 2391, 2442
BfmI	CTRYAG	2 cut(s)	19, 2337
BfoI	RGCGCY	1 cut(s)	1833
BfuAI	ACCTGC	1 cut(s)	2330
BfuI	GTATCC	1 cut(s)	51
BglI	GCCNNNNNGGC	1 cut(s)	323
BisI	GCNGC	9 cut(s)	278, 363, 375, 384, 387, 756, 1190, 1392, 1824
BlnI	CCTAGG	2 cut(s)	320, 1747
BlsI	GCNGC	9 cut(s)	279, 364, 376, 385, 388, 757, 1191, 1393, 1825
BmcAI	AGTACT	2 cut(s)	464, 1420
Bme1390I	CCNGG	7 cut(s)	495, 540, 594, 1551, 2035, 2509, 2610
Bme18I	GGWCC	3 cut(s)	1292, 1744, 2612
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	3 cut(s)	1292, 1744, 2612
BmiI	GGNNCC	3 cut(s)	9, 75, 820
BmrFI	CCNGG	7 cut(s)	495, 540, 594, 1551, 2035, 2509, 2610
BmrI	ACTGGG	1 cut(s)	1082
BmuI	ACTGGG	1 cut(s)	1082
BoxI	GACNNNNGTC	2 cut(s)	1749, 1977
BpiI	GAAGAC	4 cut(s)	569, 1158, 1533, 1976
BpmI	CTGGAG	3 cut(s)	1031, 2235, 2679
Bpu10I	CCTNAGC	1 cut(s)	828
BpuEI	CTTGAG	6 cut(s)	158, 956, 1581, 1724, 2394, 2604
BpuMI	CCSGG	2 cut(s)	540, 2035
Bsa29I	ATCGAT	2 cut(s)	255, 1264
BsaBI	GATNNNNATC	2 cut(s)	792, 807
BsaI	GGTCTC	3 cut(s)	2247, 2493, 2599
BsaJI	CCNNGG	6 cut(s)	195, 320, 1215, 1747, 1975, 2508
BsaWI	WCCGGW	2 cut(s)	103, 821
BsaXI	ACNNNNNCTCC	2 cut(s)	2575, 2605
Bsc4I	CCNNNNNNNGG	6 cut(s)	196, 201, 545, 694, 2339, 2621
Bse118I	RCCGGY	1 cut(s)	821
Bse1I	ACTGG	3 cut(s)	712, 853, 1077
Bse3DI	GCAATG	3 cut(s)	450, 455, 616
Bse8I	GATNNNNATC	2 cut(s)	792, 807
BseBI	CCWGG	5 cut(s)	495, 594, 1551, 2509, 2610
BseCI	ATCGAT	2 cut(s)	255, 1264
BseDI	CCNNGG	6 cut(s)	195, 320, 1215, 1747, 1975, 2508
BseJI	GATNNNNATC	2 cut(s)	792, 807
BseLI	CCNNNNNNNGG	6 cut(s)	196, 201, 545, 694, 2339, 2621
BseMI	GCAATG	3 cut(s)	450, 455, 616
BseMII	CTCAG	5 cut(s)	819, 1398, 1983, 2492, 2585
BseNI	ACTGG	3 cut(s)	712, 853, 1077
BseRI	GAGGAG	3 cut(s)	83, 425, 2039
BseSI	GKGCMC	2 cut(s)	1781, 2523
BseX3I	CGGCCG	1 cut(s)	278
BseXI	GCAGC	3 cut(s)	349, 1378, 1810
BseYI	CCCAGC	1 cut(s)	1819
BsgI	GTGCAG	1 cut(s)	1287
Bsh1236I	CGCG	2 cut(s)	383, 613
Bsh1285I	CGRYCG	2 cut(s)	281, 2333
BshFI	GGCC	4 cut(s)	205, 280, 302, 839
BshNI	GGYRCC	1 cut(s)	818
BshTI	ACCGGT	1 cut(s)	821
BshVI	ATCGAT	2 cut(s)	255, 1264
BsiEI	CGRYCG	2 cut(s)	281, 2333
BsiHKAI	GWGCWC	2 cut(s)	1177, 2665
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	5 cut(s)	11, 104, 539, 822, 2035
BslFI	GGGAC	1 cut(s)	2382
BslI	CCNNNNNNNGG	6 cut(s)	196, 201, 545, 694, 2339, 2621
BsmAI	GTCTC	3 cut(s)	2247, 2493, 2599
BsmFI	GGGAC	1 cut(s)	2382
BsmI	GAATGC	2 cut(s)	2385, 2452
BsnI	GGCC	4 cut(s)	205, 280, 302, 839
Bso31I	GGTCTC	3 cut(s)	2247, 2493, 2599
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	5 cut(s)	1177, 1781, 2523, 2562, 2665
Bsp1407I	TGTACA	1 cut(s)	294
BspANI	GGCC	4 cut(s)	205, 280, 302, 839
BspCNI	CTCAG	5 cut(s)	820, 1399, 1984, 2491, 2584
BspDI	ATCGAT	2 cut(s)	255, 1264
BspFNI	CGCG	2 cut(s)	383, 613
BspLI	GGNNCC	3 cut(s)	9, 75, 820
BspMAI	CTGCAG	1 cut(s)	2341
BspMI	ACCTGC	1 cut(s)	2330
BspPI	GGATC	4 cut(s)	485, 596, 1865, 2162
BspT107I	GGYRCC	1 cut(s)	818
BspTNI	GGTCTC	3 cut(s)	2247, 2493, 2599
BsrDI	GCAATG	3 cut(s)	450, 455, 616
BsrFI	RCCGGY	1 cut(s)	821
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	3 cut(s)	712, 853, 1077
BssAI	RCCGGY	1 cut(s)	821
BssECI	CCNNGG	6 cut(s)	195, 320, 1215, 1747, 1975, 2508
BssNAI	GTATAC	1 cut(s)	1051
BssT1I	CCWWGG	4 cut(s)	320, 1215, 1747, 1975
Bst1107I	GTATAC	1 cut(s)	1051
Bst2UI	CCWGG	5 cut(s)	495, 594, 1551, 2509, 2610
Bst4CI	ACNGT	6 cut(s)	294, 1317, 2127, 2180, 2195, 2362
Bst6I	CTCTTC	1 cut(s)	390
BstAPI	GCANNNNNTGC	2 cut(s)	371, 1727
BstAUI	TGTACA	1 cut(s)	294
BstC8I	GCNNGC	8 cut(s)	654, 1100, 1194, 1212, 1360, 1828, 2337, 2523
BstDEI	CTNAG	7 cut(s)	476, 828, 875, 1407, 1992, 2478, 2571
BstENI	CCTNNNNNAGG	2 cut(s)	692, 2619
BstFNI	CGCG	2 cut(s)	383, 613
BstH2I	RGCGCY	1 cut(s)	1833
BstHHI	GCGC	3 cut(s)	942, 1832, 2291
BstMAI	GTCTC	3 cut(s)	2247, 2493, 2599
BstMCI	CGRYCG	2 cut(s)	281, 2333
BstMWI	GCNNNNNNNGC	9 cut(s)	323, 371, 380, 383, 447, 1000, 1189, 1727, 1829
BstNI	CCWGG	5 cut(s)	495, 594, 1551, 2509, 2610
BstNSI	RCATGY	1 cut(s)	244
BstPAI	GACNNNNGTC	2 cut(s)	1749, 1977
BstSCI	CCNGG	7 cut(s)	493, 538, 592, 1549, 2033, 2507, 2608
BstSFI	CTRYAG	2 cut(s)	19, 2337
BstSLI	GKGCMC	2 cut(s)	1781, 2523
BstUI	CGCG	2 cut(s)	383, 613
BstV1I	GCAGC	3 cut(s)	349, 1378, 1810
BstV2I	GAAGAC	4 cut(s)	569, 1158, 1533, 1976
BstXI	CCANNNNNNTGG	1 cut(s)	2657
BstZ17I	GTATAC	1 cut(s)	1051
BstZI	CGGCCG	1 cut(s)	278
Bsu15I	ATCGAT	2 cut(s)	255, 1264
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	4 cut(s)	205, 280, 302, 839
BsuTUI	ATCGAT	2 cut(s)	255, 1264
BtsIMutI	CAGTG	4 cut(s)	242, 705, 1070, 2185
BveI	ACCTGC	1 cut(s)	2330
Cac8I	GCNNGC	8 cut(s)	654, 1100, 1194, 1212, 1360, 1828, 2337, 2523
CfoI	GCGC	3 cut(s)	942, 1832, 2291
Cfr10I	RCCGGY	1 cut(s)	821
Cfr13I	GGNCC	3 cut(s)	1292, 1744, 2612
ClaI	ATCGAT	2 cut(s)	255, 1264
CseI	GACGC	2 cut(s)	389, 602
CsiI	ACCWGGT	1 cut(s)	2608
Csp6I	GTAC	8 cut(s)	290, 295, 463, 819, 850, 1419, 1436, 2312
CspAI	ACCGGT	1 cut(s)	821
CviQI	GTAC	8 cut(s)	290, 295, 463, 819, 850, 1419, 1436, 2312
DdeI	CTNAG	7 cut(s)	476, 828, 875, 1407, 1992, 2478, 2571
DraI	TTTAAA	2 cut(s)	1458, 1789
DraIII	CACNNNGTG	1 cut(s)	1076
DrdI	GACNNNNNNGTC	1 cut(s)	2279
DseDI	GACNNNNNNGTC	1 cut(s)	2279
EaeI	YGGCCR	3 cut(s)	278, 300, 837
EagI	CGGCCG	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
EciI	GGCGGA	1 cut(s)	428
Ecl136II	GAGCTC	1 cut(s)	1175
EclXI	CGGCCG	1 cut(s)	278
Eco130I	CCWWGG	4 cut(s)	320, 1215, 1747, 1975
Eco24I	GRGCYC	2 cut(s)	1177, 2562
Eco31I	GGTCTC	3 cut(s)	2247, 2493, 2599
Eco32I	GATATC	1 cut(s)	2266
Eco47I	GGWCC	3 cut(s)	1292, 1744, 2612
Eco52I	CGGCCG	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	1175
Eco57I	CTGAAG	3 cut(s)	411, 1272, 2580
Eco88I	CYCGRG	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	1175
EcoNI	CCTNNNNNAGG	2 cut(s)	692, 2619
EcoO109I	RGGNCCY	2 cut(s)	1292, 1744
EcoRII	CCWGG	5 cut(s)	493, 592, 1549, 2507, 2608
EcoRV	GATATC	1 cut(s)	2266
EcoT14I	CCWWGG	4 cut(s)	320, 1215, 1747, 1975
EcoT22I	ATGCAT	3 cut(s)	1942, 2099, 2258
EcoT38I	GRGCYC	2 cut(s)	1177, 2562
ErhI	CCWWGG	4 cut(s)	320, 1215, 1747, 1975
FalI	AAGNNNNNCTT	8 cut(s)	387, 419, 1464, 1496, 1751, 1783, 1968, 2000
FaqI	GGGAC	1 cut(s)	2382
FauNDI	CATATG	1 cut(s)	999
FbaI	TGATCA	1 cut(s)	808
FblI	GTMKAC	2 cut(s)	1050, 2122
Fnu4HI	GCNGC	9 cut(s)	278, 363, 375, 384, 387, 756, 1190, 1392, 1824
FriOI	GRGCYC	2 cut(s)	1177, 2562
Fsp4HI	GCNGC	9 cut(s)	278, 363, 375, 384, 387, 756, 1190, 1392, 1824
FspBI	CTAG	6 cut(s)	321, 1424, 1509, 1748, 2391, 2442
FspI	TGCGCA	1 cut(s)	2290
GlaI	GCGC	3 cut(s)	941, 1831, 2290
GluI	GCNGC	9 cut(s)	278, 363, 375, 384, 387, 756, 1190, 1392, 1824
GsaI	CCCAGC	1 cut(s)	1823
GsuI	CTGGAG	3 cut(s)	1031, 2235, 2679
HaeII	RGCGCY	1 cut(s)	1833
HaeIII	GGCC	4 cut(s)	205, 280, 302, 839
HapII	CCGG	5 cut(s)	11, 104, 539, 822, 2035
HgaI	GACGC	2 cut(s)	389, 602
HhaI	GCGC	3 cut(s)	942, 1832, 2291
Hin6I	GCGC	3 cut(s)	940, 1830, 2289
HinP1I	GCGC	3 cut(s)	940, 1830, 2289
HincII	GTYRAC	2 cut(s)	109, 2130
HindII	GTYRAC	2 cut(s)	109, 2130
HindIII	AAGCTT	2 cut(s)	433, 1765
HpaII	CCGG	5 cut(s)	11, 104, 539, 822, 2035
HphI	GGTGA	3 cut(s)	554, 788, 1672
Hpy166II	GTNNAC	4 cut(s)	109, 1051, 2123, 2130
Hpy8I	GTNNAC	4 cut(s)	109, 1051, 2123, 2130
HpyCH4III	ACNGT	6 cut(s)	294, 1317, 2127, 2180, 2195, 2362
HpyCH4IV	ACGT	2 cut(s)	1606, 1933
HpyF10VI	GCNNNNNNNGC	9 cut(s)	323, 371, 380, 383, 447, 1000, 1189, 1727, 1829
HpyF3I	CTNAG	7 cut(s)	476, 828, 875, 1407, 1992, 2478, 2571
HpySE526I	ACGT	2 cut(s)	1606, 1933
HspAI	GCGC	3 cut(s)	940, 1830, 2289
KpnI	GGTACC	1 cut(s)	822
Ksp22I	TGATCA	1 cut(s)	808
LmnI	GCTCC	4 cut(s)	541, 1120, 2596, 2660
Lsp1109I	GCAGC	3 cut(s)	349, 1378, 1810
MabI	ACCWGGT	1 cut(s)	2608
MaeI	CTAG	6 cut(s)	321, 1424, 1509, 1748, 2391, 2442
MaeII	ACGT	2 cut(s)	1606, 1933
MaeIII	GTNAC	1 cut(s)	2645
MfeI	CAATTG	1 cut(s)	1178
MhlI	GDGCHC	5 cut(s)	1177, 1781, 2523, 2562, 2665
MlsI	TGGCCA	2 cut(s)	302, 839
MluI	ACGCGT	1 cut(s)	611
MluNI	TGGCCA	2 cut(s)	302, 839
MlyI	GAGTC	4 cut(s)	217, 865, 1120, 2228
MmeI	TCCRAC	2 cut(s)	236, 958
Mox20I	TGGCCA	2 cut(s)	302, 839
Mph1103I	ATGCAT	3 cut(s)	1942, 2099, 2258
MroXI	GAANNNNTTC	1 cut(s)	1614
MscI	TGGCCA	2 cut(s)	302, 839
MslI	CAYNNNNRTG	3 cut(s)	801, 1696, 2550
Msp20I	TGGCCA	2 cut(s)	302, 839
MspA1I	CMGCKG	4 cut(s)	1189, 1804, 1823, 2465
MspI	CCGG	5 cut(s)	11, 104, 539, 822, 2035
MspR9I	CCNGG	7 cut(s)	495, 540, 594, 1551, 2035, 2509, 2610
MunI	CAATTG	1 cut(s)	1178
Mva1269I	GAATGC	2 cut(s)	2385, 2452
MvaI	CCWGG	5 cut(s)	495, 594, 1551, 2509, 2610
MvnI	CGCG	2 cut(s)	383, 613
MwoI	GCNNNNNNNGC	9 cut(s)	323, 371, 380, 383, 447, 1000, 1189, 1727, 1829
NciI	CCSGG	2 cut(s)	540, 2035
NdeI	CATATG	1 cut(s)	999
NlaIV	GGNNCC	3 cut(s)	9, 75, 820
NmeAIII	GCCGAG	2 cut(s)	231, 306
NsbI	TGCGCA	1 cut(s)	2290
NsiI	ATGCAT	3 cut(s)	1942, 2099, 2258
NspI	RCATGY	1 cut(s)	244
PaqCI	CACCTGC	1 cut(s)	2330
PcsI	WCGNNNNNNNCGW	1 cut(s)	981
PctI	GAATGC	2 cut(s)	2385, 2452
PdmI	GAANNNNTTC	1 cut(s)	1614
PfeI	GAWTC	6 cut(s)	100, 334, 1015, 1091, 1244, 1477
PflFI	GACNNNGTC	1 cut(s)	2610
PfoI	TCCNGGA	1 cut(s)	493
PinAI	ACCGGT	1 cut(s)	821
PkrI	GCNGC	9 cut(s)	279, 364, 376, 385, 388, 757, 1191, 1393, 1825
PleI	GAGTC	4 cut(s)	216, 865, 1119, 2227
PpsI	GAGTC	4 cut(s)	216, 865, 1119, 2227
PpuMI	RGGWCCY	2 cut(s)	1292, 1744
PshAI	GACNNNNGTC	2 cut(s)	1749, 1977
PsiI	TTATAA	2 cut(s)	2472, 2631
Psp124BI	GAGCTC	1 cut(s)	1177
Psp1406I	AACGTT	1 cut(s)	1933
Psp5II	RGGWCCY	2 cut(s)	1292, 1744
Psp6I	CCWGG	5 cut(s)	493, 592, 1549, 2507, 2608
PspFI	CCCAGC	1 cut(s)	1819
PspGI	CCWGG	5 cut(s)	493, 592, 1549, 2507, 2608
PspN4I	GGNNCC	3 cut(s)	9, 75, 820
PspPI	GGNCC	3 cut(s)	1292, 1744, 2612
PspPPI	RGGWCCY	2 cut(s)	1292, 1744
PstI	CTGCAG	1 cut(s)	2341
PsyI	GACNNNGTC	1 cut(s)	2610
PvuII	CAGCTG	3 cut(s)	1804, 1823, 2465
RsaI	GTAC	8 cut(s)	291, 296, 464, 820, 851, 1420, 1437, 2313
RsaNI	GTAC	8 cut(s)	290, 295, 463, 819, 850, 1419, 1436, 2312
RseI	CAYNNNNRTG	3 cut(s)	801, 1696, 2550
SacI	GAGCTC	1 cut(s)	1177
SatI	GCNGC	9 cut(s)	278, 363, 375, 384, 387, 756, 1190, 1392, 1824
Sau96I	GGNCC	3 cut(s)	1292, 1744, 2612
SbfI	CCTGCAGG	1 cut(s)	2341
ScaI	AGTACT	2 cut(s)	464, 1420
SchI	GAGTC	4 cut(s)	217, 865, 1120, 2228
ScrFI	CCNGG	7 cut(s)	495, 540, 594, 1551, 2035, 2509, 2610
SdaI	CCTGCAGG	1 cut(s)	2341
SduI	GDGCHC	5 cut(s)	1177, 1781, 2523, 2562, 2665
SexAI	ACCWGGT	1 cut(s)	2608
SfcI	CTRYAG	2 cut(s)	19, 2337
SinI	GGWCC	3 cut(s)	1292, 1744, 2612
SmiMI	CAYNNNNRTG	3 cut(s)	801, 1696, 2550
SmlI	CTYRAG	6 cut(s)	137, 935, 1596, 1739, 2409, 2619
SmoI	CTYRAG	6 cut(s)	137, 935, 1596, 1739, 2409, 2619
SpeI	ACTAGT	1 cut(s)	2441
Sse8387I	CCTGCAGG	1 cut(s)	2341
SspI	AATATT	3 cut(s)	884, 907, 1161
SspMI	CTAG	6 cut(s)	321, 1424, 1509, 1748, 2391, 2442
SstI	GAGCTC	1 cut(s)	1177
StyD4I	CCNGG	7 cut(s)	493, 538, 592, 1549, 2033, 2507, 2608
StyI	CCWWGG	4 cut(s)	320, 1215, 1747, 1975
TaaI	ACNGT	6 cut(s)	294, 1317, 2127, 2180, 2195, 2362
TaiI	ACGT	2 cut(s)	1609, 1936
TaqI	TCGA	6 cut(s)	98, 255, 347, 1264, 2143, 2329
TaqII	GACCGA	1 cut(s)	2229
TatI	WGTACW	5 cut(s)	294, 462, 1418, 1435, 2311
TauI	GCSGC	6 cut(s)	280, 377, 386, 389, 758, 1192
TfiI	GAWTC	6 cut(s)	100, 334, 1015, 1091, 1244, 1477
TscAI	CASTG	4 cut(s)	242, 712, 1077, 2185
TseI	GCWGC	3 cut(s)	362, 1391, 1823
TspGWI	ACGGA	1 cut(s)	1658
TspRI	CASTG	4 cut(s)	242, 712, 1077, 2185
Tth111I	GACNNNGTC	1 cut(s)	2610
VpaK11BI	GGWCC	3 cut(s)	1292, 1744, 2612
XagI	CCTNNNNNAGG	2 cut(s)	692, 2619
XapI	RAATTY	3 cut(s)	1061, 1105, 2428
XbaI	TCTAGA	2 cut(s)	1423, 1508
XceI	RCATGY	1 cut(s)	244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2362
XmaJI	CCTAGG	2 cut(s)	320, 1747
XmiI	GTMKAC	2 cut(s)	1050, 2122
XmnI	GAANNNNTTC	1 cut(s)	1614
XspI	CTAG	6 cut(s)	321, 1424, 1509, 1748, 2391, 2442
ZrmI	AGTACT	2 cut(s)	464, 1420
Zsp2I	ATGCAT	3 cut(s)	1942, 2099, 2258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.