Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Reverse (-)

46668162 .. 46669072

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0315400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCAACGACTGGTGCAAGAACAGCGGCCGCCGAATCCAGGAGGCCTCCTCTCTTCGCTCTCTTCCGGCAATGGGTTCCGGCGAGCCAACTGCAGCTACTGGACCCACGACGCAAGACGACAGATTTTTGGCGTTCCTCAGACGGAAGTGTAGGCCAGAATGGGATCGAGGCCAACCTCGACGGGTTGGGCCATGGAGGAGAGGTCGATGAGGGCCTGCGAGTCGTCCCCGGCAGTGCAGATGTGGAAAGAGCTGTGCGGGGACCAAGCAACGGCGTTGACGCTGGCCTGGTGCCTCTGCAACTCGACGACCGGATGAACAGGGAAGCTGATGTCGAGGACGACGGCCTTGGCGCTATCCATGATGATGGTGGCCATGTACCTGGAGTTCTGCTTGCTCCATCCGTTTGTCTCTGTTTTGCAGGTGGTCCAGAGGCTTCGAAGATGGAAAGCCATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

153

Amino Acids

16.08

Weight (kDa)

4.77

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	413
Acc36I	ACCTGC	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	292
AciI	CCGC	3 cut(s)	26, 30, 259
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	2 cut(s)	27, 373
AfaI	GTAC	1 cut(s)	381
AfiI	CCNNNNNNNGG	3 cut(s)	39, 73, 272
AjnI	CCWGG	3 cut(s)	38, 288, 382
AluBI	AGCT	3 cut(s)	97, 254, 329
AluI	AGCT	3 cut(s)	97, 254, 329
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	9 cut(s)	27, 44, 154, 171, 190, 214, 286, 346, 373
ApeKI	GCWGC	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	5 cut(s)	103, 190, 214, 263, 428
AsuC2I	CCSGG	1 cut(s)	231
AsuII	TTCGAA	1 cut(s)	440
AvaII	GGWCC	3 cut(s)	103, 263, 428
BalI	TGGCCA	1 cut(s)	375
BanI	GGYRCC	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	3 cut(s)	362, 409, 439
BceAI	ACGGC	2 cut(s)	289, 361
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciT130I	CCWGG	3 cut(s)	40, 290, 384
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	413
BisI	GCNGC	3 cut(s)	27, 30, 95
BlsI	GCNGC	3 cut(s)	28, 31, 96
Bme1390I	CCNGG	4 cut(s)	40, 231, 290, 384
Bme18I	GGWCC	3 cut(s)	103, 263, 428
BmgT120I	GGNCC	5 cut(s)	103, 190, 214, 263, 428
BmiI	GGNNCC	4 cut(s)	78, 105, 264, 294
BmrFI	CCNGG	4 cut(s)	40, 231, 290, 384
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpmI	CTGGAG	1 cut(s)	405
Bpu14I	TTCGAA	1 cut(s)	440
BpuMI	CCSGG	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	193, 229, 349
BsaWI	WCCGGW	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 73, 272
Bse1I	ACTGG	2 cut(s)	16, 105
Bse3DI	GCAATG	1 cut(s)	77
BseBI	CCWGG	3 cut(s)	40, 290, 384
BseDI	CCNNGG	3 cut(s)	193, 229, 349
BseGI	GGATG	2 cut(s)	321, 401
BseLI	CCNNNNNNNGG	3 cut(s)	39, 73, 272
BseMI	GCAATG	1 cut(s)	77
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	16, 105
BseRI	GAGGAG	2 cut(s)	39, 213
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	258
Bsh1285I	CGRYCG	2 cut(s)	30, 313
BshFI	GGCC	9 cut(s)	29, 46, 156, 173, 192, 216, 288, 348, 375
BshNI	GGYRCC	1 cut(s)	292
BsiEI	CGRYCG	2 cut(s)	30, 313
BsiSI	CCGG	4 cut(s)	67, 80, 231, 313
BslFI	GGGAC	2 cut(s)	212, 276
BslI	CCNNNNNNNGG	3 cut(s)	39, 73, 272
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	2 cut(s)	212, 276
BsnI	GGCC	9 cut(s)	29, 46, 156, 173, 192, 216, 288, 348, 375
Bsp119I	TTCGAA	1 cut(s)	440
Bsp143I	GATC	1 cut(s)	165
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	3 cut(s)	26, 30, 259
BspANI	GGCC	9 cut(s)	29, 46, 156, 173, 192, 216, 288, 348, 375
BspCNI	CTCAG	1 cut(s)	152
BspLI	GGNNCC	4 cut(s)	78, 105, 264, 294
BspMAI	CTGCAG	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	413
BspPI	GGATC	1 cut(s)	173
BspT104I	TTCGAA	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	16, 105
BssECI	CCNNGG	3 cut(s)	193, 229, 349
BssMI	GATC	1 cut(s)	165
BssT1I	CCWWGG	2 cut(s)	193, 349
Bst2UI	CCWGG	3 cut(s)	40, 290, 384
Bst6I	CTCTTC	2 cut(s)	59, 68
BstBI	TTCGAA	1 cut(s)	440
BstC8I	GCNNGC	4 cut(s)	85, 218, 286, 396
BstDEI	CTNAG	1 cut(s)	139
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	2 cut(s)	321, 401
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	1 cut(s)	165
BstMCI	CGRYCG	2 cut(s)	30, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	3 cut(s)	40, 290, 384
BstSCI	CCNGG	4 cut(s)	38, 229, 288, 382
BstSFI	CTRYAG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	106
BstXI	CCANNNNNNTGG	2 cut(s)	368, 383
BstZI	CGGCCG	1 cut(s)	27
BsuRI	GGCC	9 cut(s)	29, 46, 156, 173, 192, 216, 288, 348, 375
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	321, 401
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	413
Cac8I	GCNNGC	4 cut(s)	85, 218, 286, 396
CaiI	CAGNNNCTG	1 cut(s)	100
CciNI	GCGGCCGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	5 cut(s)	103, 190, 214, 263, 428
CseI	GACGC	2 cut(s)	120, 290
Csp6I	GTAC	1 cut(s)	380
CviAII	CATG	3 cut(s)	194, 362, 377
CviQI	GTAC	1 cut(s)	380
DdeI	CTNAG	1 cut(s)	139
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
EaeI	YGGCCR	2 cut(s)	27, 373
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	59, 68
EarI	CTCTTC	2 cut(s)	59, 68
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	193, 349
Eco147I	AGGCCT	1 cut(s)	46
Eco47I	GGWCC	3 cut(s)	103, 263, 428
Eco52I	CGGCCG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	3 cut(s)	38, 288, 382
EcoT14I	CCWWGG	2 cut(s)	193, 349
ErhI	CCWWGG	2 cut(s)	193, 349
FaeI	CATG	3 cut(s)	197, 365, 380
FaiI	YATR	4 cut(s)	195, 363, 378, 456
FaqI	GGGAC	2 cut(s)	212, 276
FatI	CATG	3 cut(s)	193, 361, 376
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	3 cut(s)	27, 30, 95
FokI	GGATG	2 cut(s)	328, 388
Fsp4HI	GCNGC	3 cut(s)	27, 30, 95
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	3 cut(s)	27, 30, 95
GsuI	CTGGAG	1 cut(s)	405
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	9 cut(s)	29, 46, 156, 173, 192, 216, 288, 348, 375
HapII	CCGG	4 cut(s)	67, 80, 231, 313
HgaI	GACGC	2 cut(s)	120, 290
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	3 cut(s)	197, 365, 380
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	2 cut(s)	35, 222
HpaII	CCGG	4 cut(s)	67, 80, 231, 313
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	142, 461
Hpy188III	TCNNGA	1 cut(s)	431
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	4 cut(s)	114, 185, 311, 347
HpyCH4V	TGCA	5 cut(s)	17, 94, 239, 301, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	139
Hsp92II	CATG	3 cut(s)	197, 365, 380
HspAI	GCGC	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	1 cut(s)	106
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	3 cut(s)	46, 55, 454
MlsI	TGGCCA	1 cut(s)	375
MluNI	TGGCCA	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	231
Mox20I	TGGCCA	1 cut(s)	375
MscI	TGGCCA	1 cut(s)	375
MslI	CAYNNNNRTG	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	4 cut(s)	67, 80, 231, 313
MspR9I	CCNGG	4 cut(s)	40, 231, 290, 384
MvaI	CCWGG	3 cut(s)	40, 290, 384
MwoI	GCNNNNNNNGC	1 cut(s)	23
NciI	CCSGG	1 cut(s)	231
NcoI	CCATGG	1 cut(s)	193
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	3 cut(s)	197, 365, 380
NlaIV	GGNNCC	4 cut(s)	78, 105, 264, 294
NotI	GCGGCCGC	1 cut(s)	27
NspV	TTCGAA	1 cut(s)	440
PaqCI	CACCTGC	1 cut(s)	413
PceI	AGGCCT	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	35
PfoI	TCCNGGA	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	28, 31, 96
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
Psp6I	CCWGG	3 cut(s)	38, 288, 382
PspGI	CCWGG	3 cut(s)	38, 288, 382
PspN4I	GGNNCC	4 cut(s)	78, 105, 264, 294
PspPI	GGNCC	5 cut(s)	103, 190, 214, 263, 428
PsrI	GAACNNNNNNTAC	2 cut(s)	372, 404
PstI	CTGCAG	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	366
SatI	GCNGC	3 cut(s)	27, 30, 95
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	5 cut(s)	103, 190, 214, 263, 428
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	4 cut(s)	40, 231, 290, 384
SetI	ASST	7 cut(s)	99, 180, 207, 256, 331, 385, 427
SfcI	CTRYAG	1 cut(s)	92
SfuI	TTCGAA	1 cut(s)	440
SinI	GGWCC	3 cut(s)	103, 263, 428
SmiMI	CAYNNNNRTG	1 cut(s)	366
SseBI	AGGCCT	1 cut(s)	46
SsiI	CCGC	3 cut(s)	26, 30, 259
StuI	AGGCCT	1 cut(s)	46
StyD4I	CCNGG	4 cut(s)	38, 229, 288, 382
StyI	CCWWGG	2 cut(s)	193, 349
TaqI	TCGA	6 cut(s)	168, 180, 207, 306, 336, 440
TauI	GCSGC	2 cut(s)	29, 32
TfiI	GAWTC	1 cut(s)	35
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	332
TspGWI	ACGGA	2 cut(s)	159, 394
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	3 cut(s)	103, 263, 428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.