Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Reverse (-)

46654307 .. 46656069

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0315300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAGTAAAAATCTTGGTCACATCGATATTCTTGTAGCTGAAGCCATGGCCCTCCGTGAAGGTTTGCTTCATCTTTCTCATGTCTCTTCTCAAGCCATCATTGTTGAAGGTGATTCTAAGCTCCTTATGGATGCCCTCAACCAGAAGACCTCTACCCTTTGGCGAATCAAATTTGTTCTTCAAAATATTATGGAGCTCACACGCCTCTTTGCCTCTGTCATGTTTGGCGTGAGGCCAATTTTTTGGCTGACAGCTTGGCTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

88

Amino Acids

9.99

Weight (kDa)

8.25

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	5 - 75	2.1e-09	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	107, 182
AluBI	AGCT	4 cut(s)	38, 121, 196, 254
AluI	AGCT	4 cut(s)	38, 121, 196, 254
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	88
AoxI	GGCC	2 cut(s)	48, 233
ApoI	RAATTY	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	198
BccI	CCATC	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	49
BmsI	GCATC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	50, 235
BshVI	ATCGAT	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	50, 235
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	2 cut(s)	50, 235
BspDI	ATCGAT	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	117
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	152
BstXI	CCANNNNNNTGG	1 cut(s)	243
Bsu15I	ATCGAT	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	50, 235
BsuTUI	ATCGAT	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	49
ClaI	ATCGAT	1 cut(s)	24
CviAII	CATG	3 cut(s)	46, 80, 220
DdeI	CTNAG	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	198
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	49, 83, 223
FaiI	YATR	5 cut(s)	47, 81, 128, 191, 221
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FatI	CATG	3 cut(s)	45, 79, 219
FokI	GGATG	1 cut(s)	143
FriOI	GRGCYC	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	50, 235
Hin1II	CATG	3 cut(s)	49, 83, 223
HinfI	GANTC	2 cut(s)	113, 165
HphI	GGTGA	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	53, 101
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	49, 83, 223
LmnI	GCTCC	2 cut(s)	126, 193
LpnPI	CCDG	1 cut(s)	155
LweI	GCATC	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	17
MboII	GAAGA	3 cut(s)	78, 157, 170
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	3 cut(s)	170, 237, 261
MnlI	CCTC	6 cut(s)	62, 146, 160, 215, 223, 225
NcoI	CCATGG	1 cut(s)	45
NlaIII	CATG	3 cut(s)	49, 83, 223
NmuCI	GTSAC	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	113, 165
Psp124BI	GAGCTC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	198
Sau96I	GGNCC	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	7 cut(s)	40, 64, 112, 123, 152, 198, 256
SfaNI	GCATC	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	3 cut(s)	170, 237, 261
SspI	AATATT	1 cut(s)	187
SstI	GAGCTC	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	45
TaqI	TCGA	1 cut(s)	24
TasI	AATT	3 cut(s)	170, 237, 261
TfiI	GAWTC	2 cut(s)	113, 165
TseFI	GTSAC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	44
XapI	RAATTY	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.