Rmu_sc0027323.1_g000001

5'-3' exoribonuclease

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027323.1
Physical Location & Seq
Forward (+)
6 .. 1522
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027323.1_g000001.1.cds

Sequence Viewer

Length: 1517 bp
atgcggaatattcccaattccccatttgagattgatcttgagcgcattgtggatgatttcatattcatttgttttttcgttggaaacgatttcctgccacatatgcctactctggagattcgtgagggtgcaatcaacttgcttatggctgtatacaaaaaggaatttcatgcactgggtggatatttgactgattcaagcaagctgaatttgagtcgggtggagcatttcattcaggcagttggttgttatgaagacaaaatattccagaaacgagctcaattacatcagcggcaggcacaaagaataaagcgtgccaaggtgcaagttccccaagttcagccagattctttagttgcagttaatcgatttcaaggttctcgtcttgcttcaggtccttctcctgcaccctatcaacagtattgtagatcatctggtagaggaaatcctgaaaaagttgcacgcttttcttcagaggcatcaagtattggtgctgctattgttgaagctgagaacagcagtactctagatgttgaagtacatgaaaataaagaagatttaaaagcaaagctcaaagagattcttcgtgagaaatccgatgcttttaactctagaaatccccaagaagaagacaaggttaaattgggagaacctggatggagggataggtattatgaagaaaagttttgtgcaaaaactcaagaagaacgtgaagcagtttgtaaagatgttatcttgcgatacacagaaggcttgtgttgggtgatgaactattattatgaaggggtttgttcatgggagtggttttacccctatcattatgcaccctttgcttctgatctcaaggacctaggtcagctaaagataagcttcaatttgggcactccctttaaacccttcaatcagctgttgggggttttcccagctgcaagcgcccatgcccttcctgaacaatacagaaagttaatgactgatccaaactcgcctattattgacttttaccctactaactttgaagtggatatgaatgggaaacggtatgcatggcagggtattgcaaaattgcccttcattgaccaaggtcgtcttctttctgaggttgagaaaattgaacacacattgacagaggaggaaacccggagaaactccatgatgtttgagatgctctttgtttcatcttctcatcctctctctgtatgcatataccttcttgacgattgttgtagacagttgacagagaaagatcgagttgaggttaaggaacaaattgatcccaaatacagtgaagggatgaatggttatctatcttcatgtgctggagagtcttgtcctcctgtttttcggtctcctgttaaatgcatggaggatatcatggacaaccaagtcatctgcgcaatatataggctaccagaagtacataagcatataactcgactgcctgcaggtgttattttccccaagaagactgtgacggtgggggatctgaagcctgcacctgttttatggcatgaagattc

Protein Analysis

506

Amino Acids

58.07

Weight (kDa)

5.84

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1433
AasI GACNNNNNNGTC 1 cut(s) 1382
Acc16I TGCGCA 1 cut(s) 1393
Acc36I ACCTGC 1 cut(s) 1433
AccI GTMKAC 2 cut(s) 153, 1225
AciI CCGC 2 cut(s) 4, 292
AclWI GGATC 3 cut(s) 968, 1265, 1488
AcsI RAATTY 2 cut(s) 164, 208
AcuI CTGAAG 3 cut(s) 375, 456, 1505
AdeI CACNNNGTG 1 cut(s) 179
AfaI GTAC 3 cut(s) 523, 540, 1416
AgsI TTSAA 8 cut(s) 198, 374, 506, 536, 874, 901, 1016, 1112
AjnI CCWGG 1 cut(s) 652
AjuI GAANNNNNNNTTGG 2 cut(s) 1071, 1103
AluBI AGCT 8 cut(s) 205, 278, 509, 571, 859, 870, 907, 926
AluI AGCT 8 cut(s) 205, 278, 509, 571, 859, 870, 907, 926
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 1 cut(s) 1350
AlwI GGATC 3 cut(s) 968, 1265, 1488
ApeKI GCWGC 2 cut(s) 494, 926
ApoI RAATTY 2 cut(s) 164, 208
AspA2I CCTAGG 1 cut(s) 850
AspLEI GCGC 3 cut(s) 45, 935, 1394
AspS9I GGNCC 2 cut(s) 395, 847
AsuC2I CCSGG 1 cut(s) 1138
AsuHPI GGTGA 1 cut(s) 775
AvaII GGWCC 2 cut(s) 395, 847
AvrII CCTAGG 1 cut(s) 850
BaeGI GKGCMC 1 cut(s) 884
BanII GRGCYC 1 cut(s) 280
BbsI GAAGAC 4 cut(s) 261, 636, 1079, 1469
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 2 cut(s) 481, 913
BccI CCATC 1 cut(s) 651
BcgI CGANNNNNNTGC 2 cut(s) 1412, 1446
BciT130I CCWGG 1 cut(s) 654
BcnI CCSGG 1 cut(s) 1138
BcoDI GTCTC 1 cut(s) 1350
BfaI CTAG 3 cut(s) 527, 612, 851
BfmI CTRYAG 1 cut(s) 1440
BfoI RGCGCY 1 cut(s) 936
BfuAI ACCTGC 1 cut(s) 1433
BisI GCNGC 3 cut(s) 293, 495, 927
BlnI CCTAGG 1 cut(s) 850
BlsI GCNGC 3 cut(s) 294, 496, 928
BmcAI AGTACT 1 cut(s) 523
Bme1390I CCNGG 2 cut(s) 654, 1138
Bme18I GGWCC 2 cut(s) 395, 847
BmgT120I GGNCC 2 cut(s) 395, 847
BmrFI CCNGG 2 cut(s) 654, 1138
BmrI ACTGGG 1 cut(s) 185
BmsI GCATC 3 cut(s) 488, 589, 1152
BmuI ACTGGG 1 cut(s) 185
BoxI GACNNNNGTC 2 cut(s) 852, 1080
BpiI GAAGAC 4 cut(s) 261, 636, 1079, 1469
BpmI CTGGAG 2 cut(s) 134, 1338
BpuEI CTTGAG 3 cut(s) 59, 684, 827
BpuMI CCSGG 1 cut(s) 1138
Bsa29I ATCGAT 1 cut(s) 367
BsaI GGTCTC 1 cut(s) 1350
BsaJI CCNNGG 3 cut(s) 318, 850, 1078
Bse1I ACTGG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 654
BseCI ATCGAT 1 cut(s) 367
BseDI CCNNGG 3 cut(s) 318, 850, 1078
BseGI GGATG 4 cut(s) 58, 662, 1183, 1296
BseMII CTCAG 2 cut(s) 501, 1086
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 1142
BseSI GKGCMC 1 cut(s) 884
BseXI GCAGC 2 cut(s) 481, 913
BseYI CCCAGC 1 cut(s) 922
BsgI GTGCAG 2 cut(s) 390, 1476
BshVI ATCGAT 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 1 cut(s) 1138
BsmAI GTCTC 1 cut(s) 1350
Bso31I GGTCTC 1 cut(s) 1350
Bsp1286I GDGCHC 2 cut(s) 280, 884
Bsp143I GATC 7 cut(s) 34, 428, 838, 973, 1243, 1270, 1480
BspACI CCGC 2 cut(s) 4, 292
BspCNI CTCAG 2 cut(s) 502, 1087
BspDI ATCGAT 1 cut(s) 367
BspMAI CTGCAG 1 cut(s) 1444
BspMI ACCTGC 1 cut(s) 1433
BspPI GGATC 3 cut(s) 968, 1265, 1488
BspTNI GGTCTC 1 cut(s) 1350
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 3 cut(s) 318, 850, 1078
BssMI GATC 7 cut(s) 34, 428, 838, 973, 1243, 1270, 1480
BssNAI GTATAC 1 cut(s) 154
BssT1I CCWWGG 3 cut(s) 318, 850, 1078
Bst1107I GTATAC 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 6 cut(s) 420, 1038, 1230, 1283, 1468, 1474
BstAPI GCANNNNNTGC 1 cut(s) 830
BstC8I GCNNGC 7 cut(s) 203, 297, 315, 463, 931, 1440, 1491
BstDEI CTNAG 2 cut(s) 510, 1095
BstF5I GGATG 4 cut(s) 58, 662, 1183, 1296
BstH2I RGCGCY 1 cut(s) 936
BstHHI GCGC 3 cut(s) 45, 935, 1394
BstKTI GATC 7 cut(s) 37, 431, 841, 976, 1246, 1273, 1483
BstMAI GTCTC 1 cut(s) 1350
BstMBI GATC 7 cut(s) 34, 428, 838, 973, 1243, 1270, 1480
BstMWI GCNNNNNNNGC 3 cut(s) 103, 830, 932
BstNI CCWGG 1 cut(s) 654
BstPAI GACNNNNGTC 2 cut(s) 852, 1080
BstSCI CCNGG 2 cut(s) 652, 1136
BstSFI CTRYAG 1 cut(s) 1440
BstSLI GKGCMC 1 cut(s) 884
BstV1I GCAGC 2 cut(s) 481, 913
BstV2I GAAGAC 4 cut(s) 261, 636, 1079, 1469
BstX2I RGATCY 1 cut(s) 1480
BstYI RGATCY 1 cut(s) 1480
BstZ17I GTATAC 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 367
BsuTUI ATCGAT 1 cut(s) 367
BtsCI GGATG 4 cut(s) 58, 662, 1183, 1296
BtsIMutI CAGTG 2 cut(s) 173, 1288
BveI ACCTGC 1 cut(s) 1433
Cac8I GCNNGC 7 cut(s) 203, 297, 315, 463, 931, 1440, 1491
CfoI GCGC 3 cut(s) 45, 935, 1394
Cfr13I GGNCC 2 cut(s) 395, 847
ClaI ATCGAT 1 cut(s) 367
Csp6I GTAC 3 cut(s) 522, 539, 1415
CviQI GTAC 3 cut(s) 522, 539, 1415
DdeI CTNAG 2 cut(s) 510, 1095
DpnI GATC 7 cut(s) 36, 430, 840, 975, 1245, 1272, 1482
DpnII GATC 7 cut(s) 34, 428, 838, 973, 1243, 1270, 1480
DraI TTTAAA 2 cut(s) 561, 892
DraIII CACNNNGTG 1 cut(s) 179
DrdI GACNNNNNNGTC 1 cut(s) 1382
DseDI GACNNNNNNGTC 1 cut(s) 1382
Ecl136II GAGCTC 1 cut(s) 278
Eco130I CCWWGG 3 cut(s) 318, 850, 1078
Eco24I GRGCYC 1 cut(s) 280
Eco31I GGTCTC 1 cut(s) 1350
Eco32I GATATC 1 cut(s) 1369
Eco47I GGWCC 2 cut(s) 395, 847
Eco53kI GAGCTC 1 cut(s) 278
Eco57I CTGAAG 3 cut(s) 375, 456, 1505
EcoICRI GAGCTC 1 cut(s) 278
EcoO109I RGGNCCY 2 cut(s) 395, 847
EcoRII CCWGG 1 cut(s) 652
EcoRV GATATC 1 cut(s) 1369
EcoT14I CCWWGG 3 cut(s) 318, 850, 1078
EcoT22I ATGCAT 3 cut(s) 1045, 1202, 1361
EcoT38I GRGCYC 1 cut(s) 280
ErhI CCWWGG 3 cut(s) 318, 850, 1078
FalI AAGNNNNNCTT 6 cut(s) 567, 599, 854, 886, 1071, 1103
FauNDI CATATG 1 cut(s) 102
FblI GTMKAC 2 cut(s) 153, 1225
Fnu4HI GCNGC 3 cut(s) 293, 495, 927
FokI GGATG 4 cut(s) 65, 669, 1170, 1303
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 3 cut(s) 293, 495, 927
FspBI CTAG 3 cut(s) 527, 612, 851
FspI TGCGCA 1 cut(s) 1393
GlaI GCGC 3 cut(s) 44, 934, 1393
GluI GCNGC 3 cut(s) 293, 495, 927
GsaI CCCAGC 1 cut(s) 926
GsuI CTGGAG 2 cut(s) 134, 1338
HaeII RGCGCY 1 cut(s) 936
HapII CCGG 1 cut(s) 1138
HhaI GCGC 3 cut(s) 45, 935, 1394
Hin6I GCGC 3 cut(s) 43, 933, 1392
HinP1I GCGC 3 cut(s) 43, 933, 1392
HincII GTYRAC 1 cut(s) 1233
HindII GTYRAC 1 cut(s) 1233
HindIII AAGCTT 1 cut(s) 868
HinfI GANTC 7 cut(s) 118, 194, 214, 347, 580, 1322, 1514
HpaII CCGG 1 cut(s) 1138
HphI GGTGA 1 cut(s) 775
Hpy166II GTNNAC 3 cut(s) 154, 1226, 1233
Hpy188I TCNGA 5 cut(s) 475, 598, 838, 1096, 1485
Hpy8I GTNNAC 3 cut(s) 154, 1226, 1233
HpyAV CCTTC 8 cut(s) 408, 743, 776, 907, 953, 1078, 1217, 1280
HpyCH4III ACNGT 6 cut(s) 420, 1038, 1230, 1283, 1468, 1474
HpyCH4IV ACGT 1 cut(s) 709
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 830, 932
HpyF3I CTNAG 2 cut(s) 510, 1095
HpySE526I ACGT 1 cut(s) 709
HspAI GCGC 3 cut(s) 43, 933, 1392
Kzo9I GATC 7 cut(s) 34, 428, 838, 973, 1243, 1270, 1480
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 2 cut(s) 481, 913
LweI GCATC 3 cut(s) 488, 589, 1152
MaeI CTAG 3 cut(s) 527, 612, 851
MaeII ACGT 1 cut(s) 709
MaeIII GTNAC 1 cut(s) 1468
MalI GATC 7 cut(s) 36, 430, 840, 975, 1245, 1272, 1482
MboI GATC 7 cut(s) 34, 428, 838, 973, 1243, 1270, 1480
MflI RGATCY 1 cut(s) 1480
MhlI GDGCHC 2 cut(s) 280, 884
MluCI AATT 9 cut(s) 16, 164, 208, 281, 641, 874, 1061, 1107, 1266
MlyI GAGTC 2 cut(s) 223, 1331
MmeI TCCRAC 1 cut(s) 61
Mph1103I ATGCAT 3 cut(s) 1045, 1202, 1361
MseI TTAA 8 cut(s) 363, 560, 606, 639, 891, 965, 1257, 1353
MslI CAYNNNNRTG 1 cut(s) 799
MspA1I CMGCKG 3 cut(s) 292, 907, 926
MspI CCGG 1 cut(s) 1138
MspR9I CCNGG 2 cut(s) 654, 1138
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 3 cut(s) 103, 830, 932
NciI CCSGG 1 cut(s) 1138
NdeI CATATG 1 cut(s) 102
NdeII GATC 7 cut(s) 34, 428, 838, 973, 1243, 1270, 1480
NmuCI GTSAC 1 cut(s) 1468
NsbI TGCGCA 1 cut(s) 1393
NsiI ATGCAT 3 cut(s) 1045, 1202, 1361
PaqCI CACCTGC 1 cut(s) 1433
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 5 cut(s) 118, 194, 347, 580, 1514
PkrI GCNGC 3 cut(s) 294, 496, 928
PleI GAGTC 2 cut(s) 222, 1330
PpsI GAGTC 2 cut(s) 222, 1330
PpuMI RGGWCCY 2 cut(s) 395, 847
PshAI GACNNNNGTC 2 cut(s) 852, 1080
Psp124BI GAGCTC 1 cut(s) 280
Psp5II RGGWCCY 2 cut(s) 395, 847
Psp6I CCWGG 1 cut(s) 652
PspFI CCCAGC 1 cut(s) 922
PspGI CCWGG 1 cut(s) 652
PspPI GGNCC 2 cut(s) 395, 847
PspPPI RGGWCCY 2 cut(s) 395, 847
PstI CTGCAG 1 cut(s) 1444
PsuI RGATCY 1 cut(s) 1480
PvuII CAGCTG 2 cut(s) 907, 926
RsaI GTAC 3 cut(s) 523, 540, 1416
RsaNI GTAC 3 cut(s) 522, 539, 1415
RseI CAYNNNNRTG 1 cut(s) 799
SacI GAGCTC 1 cut(s) 280
SaqAI TTAA 8 cut(s) 363, 560, 606, 639, 891, 965, 1257, 1353
SatI GCNGC 3 cut(s) 293, 495, 927
Sau3AI GATC 7 cut(s) 34, 428, 838, 973, 1243, 1270, 1480
Sau96I GGNCC 2 cut(s) 395, 847
SbfI CCTGCAGG 1 cut(s) 1444
ScaI AGTACT 1 cut(s) 523
SchI GAGTC 2 cut(s) 223, 1331
ScrFI CCNGG 2 cut(s) 654, 1138
SdaI CCTGCAGG 1 cut(s) 1444
SduI GDGCHC 2 cut(s) 280, 884
SfaNI GCATC 3 cut(s) 488, 589, 1152
SfcI CTRYAG 1 cut(s) 1440
SinI GGWCC 2 cut(s) 395, 847
SmiMI CAYNNNNRTG 1 cut(s) 799
SmlI CTYRAG 3 cut(s) 38, 699, 842
SmoI CTYRAG 3 cut(s) 38, 699, 842
Sse8387I CCTGCAGG 1 cut(s) 1444
Sse9I AATT 9 cut(s) 16, 164, 208, 281, 641, 874, 1061, 1107, 1266
SsiI CCGC 2 cut(s) 4, 292
SspI AATATT 2 cut(s) 10, 264
SspMI CTAG 3 cut(s) 527, 612, 851
SstI GAGCTC 1 cut(s) 280
StyD4I CCNGG 2 cut(s) 652, 1136
StyI CCWWGG 3 cut(s) 318, 850, 1078
TaaI ACNGT 6 cut(s) 420, 1038, 1230, 1283, 1468, 1474
TaiI ACGT 1 cut(s) 712
TaqI TCGA 3 cut(s) 367, 1246, 1432
TaqII GACCGA 1 cut(s) 1332
TasI AATT 9 cut(s) 16, 164, 208, 281, 641, 874, 1061, 1107, 1266
TatI WGTACW 3 cut(s) 521, 538, 1414
TauI GCSGC 1 cut(s) 295
TfiI GAWTC 5 cut(s) 118, 194, 347, 580, 1514
Tru1I TTAA 8 cut(s) 363, 560, 606, 639, 891, 965, 1257, 1353
Tru9I TTAA 8 cut(s) 363, 560, 606, 639, 891, 965, 1257, 1353
TscAI CASTG 2 cut(s) 180, 1288
TseFI GTSAC 1 cut(s) 1468
TseI GCWGC 2 cut(s) 494, 926
Tsp45I GTSAC 1 cut(s) 1468
TspRI CASTG 2 cut(s) 180, 1288
VpaK11BI GGWCC 2 cut(s) 395, 847
XapI RAATTY 2 cut(s) 164, 208
XbaI TCTAGA 2 cut(s) 526, 611
XmaJI CCTAGG 1 cut(s) 850
XmiI GTMKAC 2 cut(s) 153, 1225
XspI CTAG 3 cut(s) 527, 612, 851
ZrmI AGTACT 1 cut(s) 523
Zsp2I ATGCAT 3 cut(s) 1045, 1202, 1361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.